txid119977[Organism] - GEO DataSets

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Select item 2001245701.

Genome-wide transcriptome profiling of Acidithiobacillus ferrooxidans ATCC 23270 in response to the cyc2 knockout

(Submitter supplied) The outer-membrane c-type cytochrome Cyc2 is generally considered to be the initial electron acceptor in iron respiratory chain of Acidithiobacillus ferrooxidans ATCC 23270, a model microorganism in acidophilic bioleaching environment. In our work, however, the knockout of cyc2 did not result in impaired Fe(II) consumption or growth capacity. To screen the potential genes for alternative initial electron acceptors other than Cyc2, RNA-Seq was employed to compare global gene expressions in the A. more...

Organism:: Acidithiobacillus ferrooxidans ATCC 23270

Type:: Expression profiling by high throughput sequencing

Platform:: GPL25999
4 Samples

Download data: TXT

Series

Accession:: GSE124570

ID:: 200124570

SRA Run Selector

Select item 2001548152.

Transcriptome profiling of hydrogen-oxidizing Acidithiobacillus ferrooxidans

(Submitter supplied) The study identified a total of 3169 gene transcripts (98.4% coverage). By comparing the anaerobic versus aerobic H2-oxidizing At. ferrooxidans cultures, a total of 371 DEGs were found. Of these, 168 DEGs were increased significantly during the aerobic growth on H2 (with O2 as the sole electron acceptor), while 203 DEGs increased significantly during anaerobic growth on H2 (with Fe3+ as the sole electron acceptor).

Organism:: Acidithiobacillus ferrooxidans

Type:: Expression profiling by high throughput sequencing

Platform:: GPL28899
6 Samples

Download data: CSV

Series

Accession:: GSE154815

ID:: 200154815

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000764503.

The differentially expressed genes of A. ferrooxidans ATCC 23270 at different time after introduced fluoride

(Submitter supplied) The deleterious fluoride ions, which released from fluoride in uranium during its bioleaching, strongly influenced microbial growth, energy intake, enzyme activity and relative metabolism. Whole-genome microarrays were used to obtain a comprehensive description of the molecular response by A. ferrooxidans ATCC 23270 at 4.8 mM fluoride stress.

Organism:: Acidithiobacillus ferrooxidans; Acidithiobacillus ferrooxidans ATCC 23270

Type:: Expression profiling by array

Platform:: GPL21284
5 Samples

Download data: GPR, XLS

Series

Accession:: GSE76450

ID:: 200076450

Analyze with GEO2R

Select item 2000285384.

Global Transcriptional Analysis of Stress-Response Strategies in Acidithiobacillus ferrooxidans ATCC 23270 Exposed to Organic Extractant - Lix984n

(Submitter supplied) Acidithiobacillus ferrooxidans (A. ferrooxidans) ATCC 23270 is a model bacteria for bioleaching research. Because of the use of extractant in metal extraction industry, A. ferrooxidans needs to cope with the water-organic two-phase system. To get insight into the molecular response of A. ferrooxidans to organic solvent, global gene expression pattern was examined in A. ferrooxidans ATCC 23270 cells subjected to Lix984n (an organic extractant) using the method of whole-genome DNA microarray. more...

Organism:: Acidithiobacillus ferrooxidans ATCC 23270

Type:: Expression profiling by array

Platform:: GPL13399
9 Samples

Download data: TXT

Series

Accession:: GSE28538

ID:: 200028538

Analyze with GEO2R

Select item 1000288995.

Illumina MiSeq (Acidithiobacillus ferrooxidans)

Organism:: Acidithiobacillus ferrooxidans

1 Series
6 Samples

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Platform

Accession:: GPL28899

ID:: 100028899

Select item 1000259996.

Illumina HiSeq 2000 (Acidithiobacillus ferrooxidans ATCC 23270)

Organism:: Acidithiobacillus ferrooxidans ATCC 23270

1 Series
4 Samples

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Platform

Accession:: GPL25999

ID:: 100025999

Select item 1000212847.

CSU A. ferrooxidans ATCC 23270 10k v1.0

(Submitter supplied) Acidithiobacillus ferrooxidans ATCC 23270 Protocol: http://www.sunbiotech.com.cn/en/index.aspx

Organism:: Acidithiobacillus ferrooxidans

1 Series
5 Samples

Download data: XLSX

Platform

Accession:: GPL21284

ID:: 100021284

Select item 1000133998.

whole-genome oligonucleotide array for Acidithiobacillus ferrooxidans ATCC 23270

(Submitter supplied) spotted 50-mer-based oligonucleotide Protocol: http://www.sunbiotech.com.cn/en/index.aspx

Organism:: Acidithiobacillus ferrooxidans ATCC 23270

1 Series
9 Samples

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Platform

Accession:: GPL13399

ID:: 100013399

Select item 3035369699.

GM_S_Fe

Organism:: Acidithiobacillus ferrooxidans ATCC 23270

Source name:: Δcyc2 mutant strain grown on switched energy source from S0 to Fe(II)

Platform:: GPL25999
Series:: GSE124570

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Sample

Accession:: GSM3536969

ID:: 303536969

SRA Run Selector

Select item 30353696810.

GM_Fe_Fe

Organism:: Acidithiobacillus ferrooxidans ATCC 23270

Source name:: Δcyc2 mutant strain grown on Fe(II)

Platform:: GPL25999
Series:: GSE124570

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Sample

Accession:: GSM3536968

ID:: 303536968

SRA Run Selector

Select item 30353696711.

W_S_Fe

Organism:: Acidithiobacillus ferrooxidans ATCC 23270

Source name:: Wild type strain grown on switched energy source from S0 to Fe(II)

Platform:: GPL25999
Series:: GSE124570

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Sample

Accession:: GSM3536967

ID:: 303536967

SRA Run Selector

Select item 30353696612.

W_Fe_Fe

Organism:: Acidithiobacillus ferrooxidans ATCC 23270

Source name:: Wild type strain grown on Fe(II)

Platform:: GPL25999
Series:: GSE124570

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Sample

Accession:: GSM3536966

ID:: 303536966

SRA Run Selector

Select item 30468057913.

anaerobically grown cells rep 3

Organism:: Acidithiobacillus ferrooxidans

Source name:: Bacterial culture

Platform:: GPL28899
Series:: GSE154815

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Sample

Accession:: GSM4680579

ID:: 304680579

SRA Run Selector

Select item 30468057814.

anaerobically grown cells rep 2

Organism:: Acidithiobacillus ferrooxidans

Source name:: Bacterial culture

Platform:: GPL28899
Series:: GSE154815

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Sample

Accession:: GSM4680578

ID:: 304680578

SRA Run Selector

Select item 30468057715.

anaerobically grown cells rep 1

Organism:: Acidithiobacillus ferrooxidans

Source name:: Bacterial culture

Platform:: GPL28899
Series:: GSE154815

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Sample

Accession:: GSM4680577

ID:: 304680577

SRA Run Selector

Select item 30468057616.

aerobically grown cells rep 3

Organism:: Acidithiobacillus ferrooxidans

Source name:: Bacterial culture

Platform:: GPL28899
Series:: GSE154815

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Sample

Accession:: GSM4680576

ID:: 304680576

SRA Run Selector

Select item 30468057517.

aerobically grown cells rep 2

Organism:: Acidithiobacillus ferrooxidans

Source name:: Bacterial culture

Platform:: GPL28899
Series:: GSE154815

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Sample

Accession:: GSM4680575

ID:: 304680575

SRA Run Selector

Select item 30468057418.

aerobically grown cells rep 1

Organism:: Acidithiobacillus ferrooxidans

Source name:: Bacterial culture

Platform:: GPL28899
Series:: GSE154815

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Sample

Accession:: GSM4680574

ID:: 304680574

SRA Run Selector

Select item 30202482119.

240 min after fluoride introduced

Organism:: Acidithiobacillus ferrooxidans ATCC 23270

Source name:: Continuous cultured experimental samples after 240 min fluoride introduced (channel 1) Continuous cultured control samples at 240 min without fluoride introduced (channel 2)

Platform:: GPL21284
Series:: GSE76450

Download data: GPR, XLS

Sample

Accession:: GSM2024821

ID:: 302024821

Select item 30202482020.

120 min after fluoride introduced

Organism:: Acidithiobacillus ferrooxidans ATCC 23270

Source name:: Continuous cultured experimental samples after 120 min fluoride introduced (channel 1) Continuous cultured control samples at 120 min without fluoride introduced (channel 2)