txid265606[Organism] - GEO DataSets

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Select item 2000358321.

Combining transcriptomics with functional phylogenomics elucidates the ecophysiology of sulfatases in marine bacteria

(Submitter supplied) We present a study combining gene expression analyses and bioinformatic assessment. 1120 sequences annotated as sulfatase encoding from eight Rhodopirellula strains were clustered into 173 groups of orthologous and paralogous genes. A selection of 709 sulfatase gene strains were aligned to 66 sulfatase genes of known function to check for their respective substrate specificity. Thereby, 22 major phylogenetic clusters were observed with just five being mixed clusters between Rhodopirellula and reference sequences. more...

Organism:: Rhodopirellula baltica; Rhodopirellula baltica SH 1

Type:: Expression profiling by array

Platform:: GPL7654
10 Samples

Download data: CSV

Series

Accession:: GSE35832

ID:: 200035832

Analyze with GEO2R

Select item 2000194052.

Life cycle analysis of the model organism Rhodopirellula baltica by transcritpome studies

(Submitter supplied) Gene expression was monitored throughout a growth curve of R. baltica culture: Cultures were harvested at different time points (44 h, 62 h, 82h, 96 h and 240 h) and compared with each other

Organism:: Rhodopirellula baltica; Rhodopirellula baltica SH 1

Type:: Expression profiling by array

Platform:: GPL7654
8 Samples

Download data: TXT

Series

Accession:: GSE19405

ID:: 200019405

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000140753.

Response of Rhodopirellula baltica to salt shift

(Submitter supplied) Expression profiling of the stress response of the marine Planctomycete Rhodopirellula baltica after a salinity up-shift. R. baltica cultures were grown at 28°C in mineral media with 17.5% salinity and up-shifted to 59.9%. Samples were taken after 10, 20, 40, 60 and 300min and compared with cultures before the up-shift.

Organism:: Rhodopirellula baltica; Rhodopirellula baltica SH 1

Type:: Expression profiling by array

Platform:: GPL7654
18 Samples

Download data: TXT

Series

Accession:: GSE14075

ID:: 200014075

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000138564.

Response of Rhodopirellula baltica to cold shock

(Submitter supplied) Expression profiling of the stress response of the marine Planctomycete Rhodopirellula baltica after a temperature up-shift. R. baltica cultures were grown at 28°C and then shifted to 6°C. Samples were taken after 10, 20, 40, 60 and 300min and compared with cultures before the up-shift (28°C).

Organism:: Rhodopirellula baltica; Rhodopirellula baltica SH 1

Type:: Expression profiling by array

Platform:: GPL7654
18 Samples

Download data: TXT

Series

Accession:: GSE13856

ID:: 200013856

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000137695.

Response of Rhodopirellula baltica to heat shock

(Submitter supplied) Expression profiling of the stress response of the marine Planctomycete Rhodopirellula baltica after a temperature up-shift. R. baltica cultures were grown at 28°C and then shifted to 37°C. Samples were taken after 10, 20, 40, 60 and 300min and compared with cultures before the up-shift (28°C). Time series experiment, whole genome array

Organism:: Rhodopirellula baltica; Rhodopirellula baltica SH 1

Type:: Expression profiling by array

Platform:: GPL7654
18 Samples

Download data: TXT

Series

Accession:: GSE13769

ID:: 200013769

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000076546.

Max Planck Institute, Whole Genome Array for Rhodopirellula baltica SH1T 7.4K version 1

(Submitter supplied) Strain: Rhodopirellula baltica SH 1T spotted Whole Genome Array available by Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Bremen, Germany Protocol: 70mer oligos designed and synthesized by operon (www.operon.com) Pirellula Aros 1.0

Organism:: Rhodopirellula baltica SH 1

5 Series
72 Samples

Download data

Platform

Accession:: GPL7654

ID:: 100007654

Select item 3008758417.

Sulfated polysaccharide - Fucoidan vs Glucose Replicate 3

Organism:: Rhodopirellula baltica

Source name:: Mid-exponential phase cultures (channel 1) Mid-exponential phase cultures (channel 2)

Platform:: GPL7654
Series:: GSE35832

Download data: CSV

Sample

Accession:: GSM875841

ID:: 300875841

Select item 3008758408.

Sulfated polysaccharide - Fucoidan vs Glucose Replicate 2

Organism:: Rhodopirellula baltica

Source name:: Mid-exponential phase cultures (channel 1) Mid-exponential phase cultures (channel 2)

Platform:: GPL7654
Series:: GSE35832

Download data: CSV

Sample

Accession:: GSM875840

ID:: 300875840

Select item 3008758399.

Sulfated polysaccharide - Fucoidan vs Glucose Replicate 1

Organism:: Rhodopirellula baltica

Source name:: Mid-exponential phase cultures (channel 1) Mid-exponential phase cultures (channel 2)

Platform:: GPL7654
Series:: GSE35832

Download data: CSV

Sample

Accession:: GSM875839

ID:: 300875839

Select item 30087583810.

Sulfated polysaccharide - Carrageenan vs Glucose Replicate 3

Organism:: Rhodopirellula baltica

Source name:: Mid-exponential phase cultures (channel 1) Mid-exponential phase cultures (channel 2)

Platform:: GPL7654
Series:: GSE35832

Download data: CSV

Sample

Accession:: GSM875838

ID:: 300875838

Select item 30087583711.

Sulfated polysaccharide - Carrageenan vs Glucose Replicate 2

Organism:: Rhodopirellula baltica

Source name:: Mid-exponential phase cultures (channel 1) Mid-exponential phase cultures (channel 2)

Platform:: GPL7654
Series:: GSE35832

Download data: CSV

Sample

Accession:: GSM875837

ID:: 300875837

Select item 30087583612.

Sulfated polysaccharide - Carrageenan vs Glucose Replicate 1

Organism:: Rhodopirellula baltica

Source name:: Mid-exponential phase cultures (channel 1) Mid-exponential phase cultures (channel 2)

Platform:: GPL7654
Series:: GSE35832

Download data: CSV

Sample

Accession:: GSM875836

ID:: 300875836

Select item 30087583513.

Sulfated polysaccharide - Chondroitin sulfate vs Glucose Replicate 2

Organism:: Rhodopirellula baltica

Source name:: Mid-exponential phase cultures (channel 1) Mid-exponential phase cultures (channel 2)

Platform:: GPL7654
Series:: GSE35832

Download data: CSV

Sample

Accession:: GSM875835

ID:: 300875835

Select item 30087583414.

Sulfated polysaccharide - Chondroitin sulfate vs Glucose Replicate 1

Organism:: Rhodopirellula baltica

Source name:: Mid-exponential phase cultures (channel 1) Mid-exponential phase cultures (channel 2)

Platform:: GPL7654
Series:: GSE35832

Download data: CSV

Sample

Accession:: GSM875834

ID:: 300875834

Select item 30087583315.

Control - Glucose vs. Glucose Replicate 2

Organism:: Rhodopirellula baltica

Source name:: Mid-exponential phase cultures (channel 1) Mid-exponential phase cultures (channel 2)

Platform:: GPL7654
Series:: GSE35832

Download data: CSV

Sample

Accession:: GSM875833

ID:: 300875833

Select item 30087583216.

Control - Glucose vs. Glucose Replicate 1

Organism:: Rhodopirellula baltica

Source name:: Mid-exponential phase cultures (channel 1) Mid-exponential phase cultures (channel 2)

Platform:: GPL7654
Series:: GSE35832

Download data: CSV

Sample

Accession:: GSM875832

ID:: 300875832

Select item 30048210617.

240 h vs 82 h replicate a

Organism:: Rhodopirellula baltica

Source name:: R. baltica cells 82 h (channel 1) R. baltica cells 240 h (channel 2)

Platform:: GPL7654
Series:: GSE19405

Download data: TXT

Sample

Accession:: GSM482106

ID:: 300482106

Select item 30048210518.

96 h vs 82 h replicate b

Organism:: Rhodopirellula baltica

Source name:: R. baltica cells 82 h (channel 1) R. baltica cells 96 h (channel 2)

Platform:: GPL7654
Series:: GSE19405

Download data: TXT

Sample

Accession:: GSM482105

ID:: 300482105

Select item 30048210419.

96 h vs 82 h replicate a

Organism:: Rhodopirellula baltica

Source name:: R. baltica cells 82 h (channel 1) R. baltica cells 96 h (channel 2)

Platform:: GPL7654
Series:: GSE19405

Download data: TXT

Sample

Accession:: GSM482104

ID:: 300482104

Select item 30048210320.

82 h vs 62 h replicate b

Organism:: Rhodopirellula baltica

Source name:: R. baltica cells 62 h (channel 1) R. baltica cells 82 h (channel 2)

Platform:: GPL7654
Series:: GSE19405

Download data: TXT

Sample

Accession:: GSM482103

ID:: 300482103

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txid265606[Organism] (78)
GEO DataSets
Cinara moketa voucher 3085 elongation factor 1-alpha (ef1-alpha) gene, partial c...
Cinara moketa voucher 3085 elongation factor 1-alpha (ef1-alpha) gene, partial cds
gi|635254458|gb|KF694019.1|

Nucleotide
PsbJ, partial (chloroplast) [Trigonia sp. CCD-2012]
PsbJ, partial (chloroplast) [Trigonia sp. CCD-2012]
gi|408902918|gb|AFU96098.1|

Protein
Chain A, Mammalian ependymin-related protein 1
Chain A, Mammalian ependymin-related protein 1
gi|1562366341|pdb|6E7O|A

Protein
Harveylithon munitum voucher PC 0144004 photosystem II reaction center protein D...
Harveylithon munitum voucher PC 0144004 photosystem II reaction center protein D1 (psbA) gene, partial cds; plastid
gi|2004246960|gb|MW439252.1|

Nucleotide

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