U.S. flag

An official website of the United States government

Format
Items per page
Sort by

Send to:

Choose Destination

Search results

Items: 1 to 20 of 78

1.

Combining transcriptomics with functional phylogenomics elucidates the ecophysiology of sulfatases in marine bacteria

(Submitter supplied) We present a study combining gene expression analyses and bioinformatic assessment. 1120 sequences annotated as sulfatase encoding from eight Rhodopirellula strains were clustered into 173 groups of orthologous and paralogous genes. A selection of 709 sulfatase gene strains were aligned to 66 sulfatase genes of known function to check for their respective substrate specificity. Thereby, 22 major phylogenetic clusters were observed with just five being mixed clusters between Rhodopirellula and reference sequences. more...
Organism:
Rhodopirellula baltica; Rhodopirellula baltica SH 1
Type:
Expression profiling by array
Platform:
GPL7654
10 Samples
Download data: CSV
Series
Accession:
GSE35832
ID:
200035832
2.

Life cycle analysis of the model organism Rhodopirellula baltica by transcritpome studies

(Submitter supplied) Gene expression was monitored throughout a growth curve of R. baltica culture: Cultures were harvested at different time points (44 h, 62 h, 82h, 96 h and 240 h) and compared with each other
Organism:
Rhodopirellula baltica; Rhodopirellula baltica SH 1
Type:
Expression profiling by array
Platform:
GPL7654
8 Samples
Download data: TXT
Series
Accession:
GSE19405
ID:
200019405
3.

Response of Rhodopirellula baltica to salt shift

(Submitter supplied) Expression profiling of the stress response of the marine Planctomycete Rhodopirellula baltica after a salinity up-shift. R. baltica cultures were grown at 28°C in mineral media with 17.5% salinity and up-shifted to 59.9%. Samples were taken after 10, 20, 40, 60 and 300min and compared with cultures before the up-shift.
Organism:
Rhodopirellula baltica; Rhodopirellula baltica SH 1
Type:
Expression profiling by array
Platform:
GPL7654
18 Samples
Download data: TXT
Series
Accession:
GSE14075
ID:
200014075
4.

Response of Rhodopirellula baltica to cold shock

(Submitter supplied) Expression profiling of the stress response of the marine Planctomycete Rhodopirellula baltica after a temperature up-shift. R. baltica cultures were grown at 28°C and then shifted to 6°C. Samples were taken after 10, 20, 40, 60 and 300min and compared with cultures before the up-shift (28°C).
Organism:
Rhodopirellula baltica; Rhodopirellula baltica SH 1
Type:
Expression profiling by array
Platform:
GPL7654
18 Samples
Download data: TXT
Series
Accession:
GSE13856
ID:
200013856
5.

Response of Rhodopirellula baltica to heat shock

(Submitter supplied) Expression profiling of the stress response of the marine Planctomycete Rhodopirellula baltica after a temperature up-shift. R. baltica cultures were grown at 28°C and then shifted to 37°C. Samples were taken after 10, 20, 40, 60 and 300min and compared with cultures before the up-shift (28°C). Time series experiment, whole genome array
Organism:
Rhodopirellula baltica; Rhodopirellula baltica SH 1
Type:
Expression profiling by array
Platform:
GPL7654
18 Samples
Download data: TXT
Series
Accession:
GSE13769
ID:
200013769
6.

Max Planck Institute, Whole Genome Array for Rhodopirellula baltica SH1T 7.4K version 1

(Submitter supplied) Strain: Rhodopirellula baltica SH 1T spotted Whole Genome Array available by Microbial Genomics Group, Max Planck Institute for Marine Microbiology, Bremen, Germany Protocol: 70mer oligos designed and synthesized by operon (www.operon.com) Pirellula Aros 1.0
Organism:
Rhodopirellula baltica SH 1
5 Series
72 Samples
Download data
Platform
Accession:
GPL7654
ID:
100007654
7.

Sulfated polysaccharide - Fucoidan vs Glucose Replicate 3

Organism:
Rhodopirellula baltica
Source name:
Mid-exponential phase cultures (channel 1) Mid-exponential phase cultures (channel 2)
Platform:
GPL7654
Series:
GSE35832
Download data: CSV
Sample
Accession:
GSM875841
ID:
300875841
8.

Sulfated polysaccharide - Fucoidan vs Glucose Replicate 2

Organism:
Rhodopirellula baltica
Source name:
Mid-exponential phase cultures (channel 1) Mid-exponential phase cultures (channel 2)
Platform:
GPL7654
Series:
GSE35832
Download data: CSV
Sample
Accession:
GSM875840
ID:
300875840
9.

Sulfated polysaccharide - Fucoidan vs Glucose Replicate 1

Organism:
Rhodopirellula baltica
Source name:
Mid-exponential phase cultures (channel 1) Mid-exponential phase cultures (channel 2)
Platform:
GPL7654
Series:
GSE35832
Download data: CSV
Sample
Accession:
GSM875839
ID:
300875839
10.

Sulfated polysaccharide - Carrageenan vs Glucose Replicate 3

Organism:
Rhodopirellula baltica
Source name:
Mid-exponential phase cultures (channel 1) Mid-exponential phase cultures (channel 2)
Platform:
GPL7654
Series:
GSE35832
Download data: CSV
Sample
Accession:
GSM875838
ID:
300875838
11.

Sulfated polysaccharide - Carrageenan vs Glucose Replicate 2

Organism:
Rhodopirellula baltica
Source name:
Mid-exponential phase cultures (channel 1) Mid-exponential phase cultures (channel 2)
Platform:
GPL7654
Series:
GSE35832
Download data: CSV
Sample
Accession:
GSM875837
ID:
300875837
12.

Sulfated polysaccharide - Carrageenan vs Glucose Replicate 1

Organism:
Rhodopirellula baltica
Source name:
Mid-exponential phase cultures (channel 1) Mid-exponential phase cultures (channel 2)
Platform:
GPL7654
Series:
GSE35832
Download data: CSV
Sample
Accession:
GSM875836
ID:
300875836
13.

Sulfated polysaccharide - Chondroitin sulfate vs Glucose Replicate 2

Organism:
Rhodopirellula baltica
Source name:
Mid-exponential phase cultures (channel 1) Mid-exponential phase cultures (channel 2)
Platform:
GPL7654
Series:
GSE35832
Download data: CSV
Sample
Accession:
GSM875835
ID:
300875835
14.

Sulfated polysaccharide - Chondroitin sulfate vs Glucose Replicate 1

Organism:
Rhodopirellula baltica
Source name:
Mid-exponential phase cultures (channel 1) Mid-exponential phase cultures (channel 2)
Platform:
GPL7654
Series:
GSE35832
Download data: CSV
Sample
Accession:
GSM875834
ID:
300875834
15.

Control - Glucose vs. Glucose Replicate 2

Organism:
Rhodopirellula baltica
Source name:
Mid-exponential phase cultures (channel 1) Mid-exponential phase cultures (channel 2)
Platform:
GPL7654
Series:
GSE35832
Download data: CSV
Sample
Accession:
GSM875833
ID:
300875833
16.

Control - Glucose vs. Glucose Replicate 1

Organism:
Rhodopirellula baltica
Source name:
Mid-exponential phase cultures (channel 1) Mid-exponential phase cultures (channel 2)
Platform:
GPL7654
Series:
GSE35832
Download data: CSV
Sample
Accession:
GSM875832
ID:
300875832
17.

240 h vs 82 h replicate a

Organism:
Rhodopirellula baltica
Source name:
R. baltica cells 82 h (channel 1) R. baltica cells 240 h (channel 2)
Platform:
GPL7654
Series:
GSE19405
Download data: TXT
Sample
Accession:
GSM482106
ID:
300482106
18.

96 h vs 82 h replicate b

Organism:
Rhodopirellula baltica
Source name:
R. baltica cells 82 h (channel 1) R. baltica cells 96 h (channel 2)
Platform:
GPL7654
Series:
GSE19405
Download data: TXT
Sample
Accession:
GSM482105
ID:
300482105
19.

96 h vs 82 h replicate a

Organism:
Rhodopirellula baltica
Source name:
R. baltica cells 82 h (channel 1) R. baltica cells 96 h (channel 2)
Platform:
GPL7654
Series:
GSE19405
Download data: TXT
Sample
Accession:
GSM482104
ID:
300482104
20.

82 h vs 62 h replicate b

Organism:
Rhodopirellula baltica
Source name:
R. baltica cells 62 h (channel 1) R. baltica cells 82 h (channel 2)
Platform:
GPL7654
Series:
GSE19405
Download data: TXT
Sample
Accession:
GSM482103
ID:
300482103
Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

db=gds|term=txid265606[Organism]|query=14|qty=3|blobid=MCID_6723adb26cd4725ffc76abe3|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
   Taxonomic Groups  [List]
Tree placeholder
    Top Organisms  [Tree]

Find related data

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center