txid2745[Organism] - GEO DataSets - NCBI

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Influence of 3HP and PDO on cell metabolism at the transcriptional level in Halomonas bluephagenesis

(Submitter supplied) To investigate degradation genes in the 3HP degradation pathway, transcriptome sequencing was performed under culture conditions with and without 3HP as the carbon source. Overall, in the presence of 3HP as a sole carbon source, 384 genes were upregulated while 210 downregulated. Among them, we identified two 3HP degradation genes, GME_RS01260 encoding choline dehydrogenase (RefSeq. Accession: WP_009721523) and GME_RS01255 encoding CoA-acylating methylmalonate-semialdehyde dehydrogenase (RefSeq. more...

Organism:: Halomonas bluephagenesis

Type:: Expression profiling by high throughput sequencing

Platform:: GPL29233
3 Samples

Download data: XLS

Series

Accession:: GSE159233

ID:: 200159233

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001037732.

Phenotypic responses to interspecies competition and commensalism in a naturally-derived microbial co-culture

(Submitter supplied) Testing of response of hetertrophic partners (Halomonas sp. HL-48 and Marinobacter sp. HL-58) to both axenic and co-culture growth using both glucose and xylose

Organism:: Halomonas sp. HL58; Halomonas sp. HL48

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL24006 GPL24010 GPL24007
22 Samples

Download data: CSV

Series

Accession:: GSE103773

ID:: 200103773

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000292333.

Illumina NovaSeq 6000 (Halomonas bluephagenesis)

Organism:: Halomonas bluephagenesis

1 Series
3 Samples

Platform

Accession:: GPL29233

ID:: 100029233

Select item 1000240104.

AB 5500xl Genetic Analyzer (Halomonas sp. HL48; Halomonas sp. HL58)

Organism:: Halomonas sp. HL48; Halomonas sp. HL58

1 Series
9 Samples

Platform

Accession:: GPL24010

ID:: 100024010

Select item 1000240075.

AB 5500xl Genetic Analyzer (Halomonas sp. HL58)

Organism:: Halomonas sp. HL58

1 Series
5 Samples

Platform

Accession:: GPL24007

ID:: 100024007

Select item 1000240066.

AB 5500xl Genetic Analyzer (Halomonas sp. HL48)

Organism:: Halomonas sp. HL48

1 Series
8 Samples

Platform

Accession:: GPL24006

ID:: 100024006

Select item 3048241807.

Organism:: Halomonas bluephagenesis

Source name:: TDdddAC_G_PDO

Platform:: GPL29233
Series:: GSE159233

Download data: XLS

Sample

Accession:: GSM4824180

ID:: 304824180

SRA Run Selector

Select item 3048241798.

Organism:: Halomonas bluephagenesis

Source name:: TD_3HP

Platform:: GPL29233
Series:: GSE159233

Download data: XLS

Sample

Accession:: GSM4824179

ID:: 304824179

SRA Run Selector

Select item 3048241789.

Organism:: Halomonas bluephagenesis

Source name:: TD_control

Platform:: GPL29233
Series:: GSE159233

Download data: XLS

Sample

Accession:: GSM4824178

ID:: 304824178

SRA Run Selector

Select item 30278158410.

HL-58 Glucose Rep5

Organism:: Halomonas sp. HL58

Source name:: Halomonas sp. HL-58

Platform:: GPL24007
Series:: GSE103773

Sample

Accession:: GSM2781584

ID:: 302781584

SRA Run Selector

Select item 30278158311.

HL-58 Glucose Rep4

Organism:: Halomonas sp. HL58

Source name:: Halomonas sp. HL-58

Platform:: GPL24007
Series:: GSE103773

Sample

Accession:: GSM2781583

ID:: 302781583

SRA Run Selector

Select item 30278158212.

HL-58 Glucose Rep3

Organism:: Halomonas sp. HL58

Source name:: Halomonas sp. HL-58

Platform:: GPL24007
Series:: GSE103773

Sample

Accession:: GSM2781582

ID:: 302781582

SRA Run Selector

Select item 30278158113.

HL-58 Glucose Rep2

Organism:: Halomonas sp. HL58

Source name:: Halomonas sp. HL-58

Platform:: GPL24007
Series:: GSE103773

Sample

Accession:: GSM2781581

ID:: 302781581

SRA Run Selector

Select item 30278158014.

HL-58 Glucose Rep1

Organism:: Halomonas sp. HL58

Source name:: Halomonas sp. HL-58

Platform:: GPL24007
Series:: GSE103773

Sample

Accession:: GSM2781580

ID:: 302781580

SRA Run Selector

Select item 30278159315.

HL-48 Xylose Rep4

Organism:: Halomonas sp. HL48

Source name:: Halomonas sp. HL-48

Platform:: GPL24006
Series:: GSE103773

Sample

Accession:: GSM2781593

ID:: 302781593

SRA Run Selector

Select item 30278159216.

HL-48 Xylose Rep3

Organism:: Halomonas sp. HL48

Source name:: Halomonas sp. HL-48

Platform:: GPL24006
Series:: GSE103773

Sample

Accession:: GSM2781592

ID:: 302781592

SRA Run Selector

Select item 30278159117.

HL-48 Xylose Rep2

Organism:: Halomonas sp. HL48

Source name:: Halomonas sp. HL-48

Platform:: GPL24006
Series:: GSE103773

Sample

Accession:: GSM2781591

ID:: 302781591

SRA Run Selector

Select item 30278159018.

HL-48 Xylose Rep1

Organism:: Halomonas sp. HL48

Source name:: Halomonas sp. HL-48

Platform:: GPL24006
Series:: GSE103773

Sample

Accession:: GSM2781590

ID:: 302781590

SRA Run Selector

Select item 30278157919.

HL-48 Glucose Rep4

Organism:: Halomonas sp. HL48

Source name:: Halomonas sp. HL-48

Platform:: GPL24006
Series:: GSE103773

Sample

Accession:: GSM2781579

ID:: 302781579

SRA Run Selector

Select item 30278157820.

HL-48 Glucose Rep3

Organism:: Halomonas sp. HL48

Source name:: Halomonas sp. HL-48

Platform:: GPL24006
Series:: GSE103773

Sample

Accession:: GSM2781578

ID:: 302781578

SRA Run Selector

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txid2745[Organism] (31)
GEO DataSets
MAG: Gemmiger sp. isolate SUG2966 k141_47223, whole genome shotgun sequence
MAG: Gemmiger sp. isolate SUG2966 k141_47223, whole genome shotgun sequence
gi|2630041417|ref|NZ_JAXFEL01000001 gnl|WGS:NZ_JAXFEL01|k141_47223

Nucleotide

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