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Items: 1 to 20 of 21

1.

Mechanistic divergence of piRNA biogenesis in Drosophila

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Drosophila bifasciata; Drosophila eugracilis; Drosophila melanogaster; Drosophila mojavensis; Drosophila pseudoobscura
Type:
Non-coding RNA profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
5 related Platforms
27 Samples
Download data: BED, TXT
Series
Accession:
GSE213383
ID:
200213383
2.

Mechanistic divergence of piRNA biogenesis in Drosophila [RNA-seq]

(Submitter supplied) Organisms require mechanisms to distinguish self and non-self RNA. This distinction is crucial to initiate the biogenesis of piRNAs. In Drosophila ovaries, PIWI-guided slicing and the recognition of piRNA precursor transcripts by the DEAD-box RNA helicase Yb are the two known mechanisms to initiate biogenesis in the germline and the soma, respectively. Both, the PIWI proteins and Yb are highly conserved across most Drosophila species and are thought to be essential to the piRNA pathway and for silencing TEs. more...
Organism:
Drosophila pseudoobscura; Drosophila bifasciata; Drosophila eugracilis
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL32665 GPL32664 GPL32666
4 Samples
Download data: BED
Series
Accession:
GSE213375
ID:
200213375
3.

Mechanistic divergence of piRNA biogenesis in Drosophila [ncRNA-seq]

(Submitter supplied) Organisms require mechanisms to distinguish self and non-self RNA. This distinction is crucial to initiate the biogenesis of piRNAs. In Drosophila ovaries, PIWI-guided slicing and the recognition of piRNA precursor transcripts by the DEAD-box RNA helicase Yb are the two known mechanisms to initiate biogenesis in the germline and the soma, respectively. Both, the PIWI proteins and Yb are highly conserved across most Drosophila species and are thought to be essential to the piRNA pathway and for silencing TEs. more...
Organism:
Drosophila bifasciata; Drosophila melanogaster; Drosophila pseudoobscura; Drosophila eugracilis; Drosophila mojavensis
Type:
Non-coding RNA profiling by high throughput sequencing
5 related Platforms
17 Samples
Download data: BED, TXT
Series
Accession:
GSE213369
ID:
200213369
4.

Comparative Validation of the D. melanogaster Encyclopedia of DNA Elements Transcript Models

(Submitter supplied) The model organism Encyclopedia of DNA Elements project (modENCODE) has produced a comprehensive annotation of D. melanogaster transcript models based on an enormous amount of high-throughput experimental data. However, some transcribed elements may not be functional, and technical artifacts may lead to erroneous inference of transcription. Inter-species comparison provides confidence to predicted annotation, since transcriptional activity that has been evolutionarily conserved is likely to have an advantageous function. more...
Organism:
Drosophila ananassae; Drosophila simulans; Drosophila virilis; Drosophila elegans; Drosophila biarmipes; Drosophila mojavensis; Drosophila yakuba; Drosophila eugracilis; Drosophila takahashii; Drosophila ficusphila; Drosophila kikkawai; Drosophila bipectinata; Drosophila rhopaloa; Drosophila melanogaster; Drosophila pseudoobscura
Type:
Expression profiling by high throughput sequencing
34 related Platforms
93 Samples
Download data: BAM, BED, RPKM, TXT
Series
Accession:
GSE44612
ID:
200044612
5.

mRNA-Seq of whole adult females and males, and miixed sex embryos, from multiple Drosophila species

(Submitter supplied) We performed transcriptional profiling of sexed whole adults and mixed sex embryos of eight Drosophila species. These data were used in a comparative transcriptomics analysis of multiple Drosophila species to define functional elements conserved throughout the Drosophila genus.
Organism:
Drosophila ficusphila; Drosophila bipectinata; Drosophila eugracilis; Drosophila takahashii; Drosophila kikkawai; Drosophila rhopaloa; Drosophila elegans; Drosophila biarmipes
Type:
Expression profiling by high throughput sequencing
16 related Platforms
26 Samples
Download data: RPKM, TXT
Series
Accession:
GSE43321
ID:
200043321
6.

Illumina HiSeq 3000 (Drosophila eugracilis)

Organism:
Drosophila eugracilis
Download data
Platform
Accession:
GPL34777
ID:
100034777
7.

Illumina HiSeq 4000 (Drosophila eugracilis)

Organism:
Drosophila eugracilis
Download data
Platform
Accession:
GPL34776
ID:
100034776
8.

Illumina HiSeq 2500 (Drosophila eugracilis)

Organism:
Drosophila eugracilis
3 Series
8 Samples
Download data
Platform
Accession:
GPL32665
ID:
100032665
9.

Illumina Genome Analyzer IIx (Drosophila eugracilis)

Organism:
Drosophila eugracilis
2 Series
2 Samples
Download data
Platform
Accession:
GPL16466
ID:
100016466
10.

Illumina HiSeq 2000 (Drosophila eugracilis)

Organism:
Drosophila eugracilis
2 Series
1 Sample
Download data
Platform
Accession:
GPL16465
ID:
100016465
11.

Deug_ovary_QuantSeq

Organism:
Drosophila eugracilis
Source name:
ovaries
Platform:
GPL32665
Series:
GSE213375 GSE213383
Download data: BED
Sample
Accession:
GSM6585256
ID:
306585256
12.

Deug_ovary_polyA

Organism:
Drosophila eugracilis
Source name:
ovaries
Platform:
GPL32665
Series:
GSE213375 GSE213383
Download data: BED
Sample
Accession:
GSM6585255
ID:
306585255
13.

Deug_Piwi-IP_oxidised_sRNA

Organism:
Drosophila eugracilis
Source name:
ovaries
Platform:
GPL32665
Series:
GSE213369 GSE213383
Download data: TXT
Sample
Accession:
GSM6583416
ID:
306583416
14.

Deug_Aub-IP_oxidised_sRNA

Organism:
Drosophila eugracilis
Source name:
ovaries
Platform:
GPL32665
Series:
GSE213369 GSE213383
Download data: TXT
Sample
Accession:
GSM6583415
ID:
306583415
15.

Deug_ovary_unoxidised_sRNA

Organism:
Drosophila eugracilis
Source name:
ovaries
Platform:
GPL32665
Series:
GSE213369 GSE213383
Download data: BED
Sample
Accession:
GSM6583414
ID:
306583414
16.

Deug_embryo_oxidised_sRNA

Organism:
Drosophila eugracilis
Source name:
embryos
Platform:
GPL32665
Series:
GSE213369 GSE213383
Download data: TXT
Sample
Accession:
GSM6583412
ID:
306583412
17.

Deug_ovary_oxidised_sRNA_rep2

Organism:
Drosophila eugracilis
Source name:
ovaries
Platform:
GPL32665
Series:
GSE213369 GSE213383
Download data: BED
Sample
Accession:
GSM6583411
ID:
306583411
18.

Deug_ovary_oxidised_sRNA_rep1

Organism:
Drosophila eugracilis
Source name:
ovaries
Platform:
GPL32665
Series:
GSE213369 GSE213383
Download data: TXT
Sample
Accession:
GSM6583409
ID:
306583409
19.

Deug_Embryo_replicate1

Organism:
Drosophila eugracilis
Source name:
Embryos
Platform:
GPL16465
Series:
GSE43321 GSE44612
Download data: RPKM, TXT
Sample
Accession:
GSM1060491
ID:
301060491
20.

Deug_Male_replicate1

Organism:
Drosophila eugracilis
Source name:
Whole body
Platform:
GPL16466
Series:
GSE43321 GSE44612
Download data: RPKM, TXT
Sample
Accession:
GSM1060493
ID:
301060493
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