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Items: 18

1.

Butyrivibrio hungatei MB2003 and Butyrivibrio proteoclasticus B316T grown in mono- and co-cultures on xylan or pectin

(Submitter supplied) Rumen bacterial species belonging to the genera Butyrivibrio are important degraders of plant polysaccharides, particularly hemicelluloses (arabinoxylans) and pectin. Currently, four distinct species are recognized which have very similar substrate utilization profiles, but little is known about how these microorganisms are able to co-exist in the rumen. To investigate this question, Butyrivibrio hungatei MB2003 and Butyrivibrio proteoclasticus B316T were grown alone or in co-culture on the insoluble substrates, xylan or pectin, and their growth, release of sugars, fermentation end products and transcriptomes were examined. more...
Organism:
Butyrivibrio proteoclasticus; Butyrivibrio hungatei
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL25616 GPL25615 GPL25614
18 Samples
Download data: TXT
Series
Accession:
GSE120544
ID:
200120544

PubMed Full text in PMC Similar studies SRA Run Selector

2.

M.ruminantium B.proteoclasticus coculture vs monocultures

(Submitter supplied) This study was undertaken with two major goals in mind: i) To investigate the potential for interspecies hydrogen transfer between a hemicellulytic rumen bacterium (B. proteoclasticus) and a methanogenic achaea (M. ruminantium) Microscopic examination had previously shown B. proteoclasticus in co-culture with M. ruminantium rapidly formed cell to cell co-aggregates. ii) To examine the expression of genes involved in methanogenesis under more rumen-like conditions.
Organism:
Butyrivibrio proteoclasticus B316; Methanobrevibacter ruminantium M1
Type:
Expression profiling by array
Platform:
GPL9436
1 Sample
Download data: GPR
Series
Accession:
GSE18716
ID:
200018716

PubMed Full text in PMC Similar studies Analyze with GEO2R

3.

Illumina HiSeq 2000 (Butyrivibrio hungatei; Butyrivibrio proteoclasticus)

Organism:
Butyrivibrio proteoclasticus; Butyrivibrio hungatei
1 Series
6 Samples
Download data
Platform
Accession:
GPL25616
ID:
100025616

4.

Illumina HiSeq 2000 (Butyrivibrio proteoclasticus)

Organism:
Butyrivibrio proteoclasticus
1 Series
6 Samples
Download data
Platform
Accession:
GPL25615
ID:
100025615

5.

AgResearch, Rumen Microbial Genomics_Bpr_Mru_20K_v1_Print 121

(Submitter supplied) 70mer and 50mer oligonucleotide probes were designed to the ORFs identified by GLIMMER in the draft sequences of B. proteoclasticus and M. ruminantium using ROSO (Recherche et Optimisation de Sondes Oligonucleotidiques; Reymond et al. 2004; Available: [http://pbil.univ-lyon1.fr/roso]. Controls included Blanks, 8 Arabidopsis thaliana genes and randomly in-silico mutated genes from B. proteoclasticus. more...
Organism:
Butyrivibrio proteoclasticus B316; Methanobrevibacter ruminantium M1
1 Series
1 Sample
Download data: TXT
Platform
Accession:
GPL9436
ID:
100009436

6.

B316-3-Pectin

Organism:
Butyrivibrio proteoclasticus
Source name:
Cultured cells
Platform:
GPL25615
Series:
GSE120544
Download data
Sample
Accession:
GSM3402790
ID:
303402790

SRA Run Selector

7.

B316-2-Pectin

Organism:
Butyrivibrio proteoclasticus
Source name:
Cultured cells
Platform:
GPL25615
Series:
GSE120544
Download data
Sample
Accession:
GSM3402789
ID:
303402789

SRA Run Selector

8.

B316-1-Pectin

Organism:
Butyrivibrio proteoclasticus
Source name:
Cultured cells
Platform:
GPL25615
Series:
GSE120544
Download data
Sample
Accession:
GSM3402788
ID:
303402788

SRA Run Selector

9.

B316-3-Xylan

Organism:
Butyrivibrio proteoclasticus
Source name:
Cultured cells
Platform:
GPL25615
Series:
GSE120544
Download data
Sample
Accession:
GSM3402781
ID:
303402781

SRA Run Selector

10.

B316-2-Xylan

Organism:
Butyrivibrio proteoclasticus
Source name:
Cultured cells
Platform:
GPL25615
Series:
GSE120544
Download data
Sample
Accession:
GSM3402780
ID:
303402780

SRA Run Selector

11.

B316-1-Xylan

Organism:
Butyrivibrio proteoclasticus
Source name:
Cultured cells
Platform:
GPL25615
Series:
GSE120544
Download data
Sample
Accession:
GSM3402779
ID:
303402779

SRA Run Selector

12.

Co-culture-3-Pectin

Organism:
Butyrivibrio proteoclasticus; Butyrivibrio hungatei
Source name:
Cultured cells
Platform:
GPL25616
Series:
GSE120544
Download data
Sample
Accession:
GSM3402793
ID:
303402793

SRA Run Selector

13.

Co-culture-2-Pectin

Organism:
Butyrivibrio proteoclasticus; Butyrivibrio hungatei
Source name:
Cultured cells
Platform:
GPL25616
Series:
GSE120544
Download data
Sample
Accession:
GSM3402792
ID:
303402792

SRA Run Selector

14.

Co-culture-1-Pectin

Organism:
Butyrivibrio proteoclasticus; Butyrivibrio hungatei
Source name:
Cultured cells
Platform:
GPL25616
Series:
GSE120544
Download data
Sample
Accession:
GSM3402791
ID:
303402791

SRA Run Selector

15.

Co-culture-3-Xylan

Organism:
Butyrivibrio proteoclasticus; Butyrivibrio hungatei
Source name:
Cultured cells
Platform:
GPL25616
Series:
GSE120544
Download data
Sample
Accession:
GSM3402784
ID:
303402784

SRA Run Selector

16.

Co-culture-2-Xylan

Organism:
Butyrivibrio proteoclasticus; Butyrivibrio hungatei
Source name:
Cultured cells
Platform:
GPL25616
Series:
GSE120544
Download data
Sample
Accession:
GSM3402783
ID:
303402783

SRA Run Selector

17.

Co-culture-1-Xylan

Organism:
Butyrivibrio proteoclasticus; Butyrivibrio hungatei
Source name:
Cultured cells
Platform:
GPL25616
Series:
GSE120544
Download data
Sample
Accession:
GSM3402782
ID:
303402782

SRA Run Selector

18.

B.proteoclasticus_M.ruminantium_Coculture_vs_Pooled Monocultures

Organism:
Butyrivibrio proteoclasticus B316; Methanobrevibacter ruminantium M1
Source name:
Monocultures (channel 1) Cocultures (channel 2)
Platform:
GPL9436
Series:
GSE18716
Download data: GPR
Sample
Accession:
GSM462293
ID:
300462293

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