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Items: 7

1.

Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids.

(Submitter supplied) The behavior of transcriptomes and epigenomes in hybrids of heterotic parents is of fundamental interest. Here we report highly integrated maps of the epigenome, mRNA and small RNA transcriptomes of two rice subspecies and their reciprocal hybrids. We found that gene activity was correlated with DNA methylation and both active and repressive histone modifications in transcribed regions. Differential epigenetic modifications correlated with changes in transcript levels among hybrids and parental lines. more...
Organism:
Oryza sativa
Type:
Non-coding RNA profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing
Platform:
GPL9147
24 Samples
Download data: BED, TAR
Series
Accession:
GSE19602
ID:
200019602

PubMed Full text in PMC Similar studies SRA Run Selector

2.

smRNA-Seq_Nipponbare/93-11

Organism:
Oryza sativa
Source name:
seedling shoot
Platform:
GPL9147
Series:
GSE19602
Download data: TAR
Sample
Accession:
GSM489089
ID:
300489089

SRA Run Selector

3.

H3K27me3_ChIPSeq_Nipponbare/93-11

Organism:
Oryza sativa
Source name:
seedling shoot
Platform:
GPL9147
Series:
GSE19602
Download data: BED, TAR
Sample
Accession:
GSM489085
ID:
300489085

SRA Run Selector

4.

H3K9ac_ChIPSeq_Nipponbare/93-11

Organism:
Oryza sativa
Source name:
seedling shoot
Platform:
GPL9147
Series:
GSE19602
Download data: BED, TAR
Sample
Accession:
GSM489081
ID:
300489081

SRA Run Selector

5.

H3K4me3_ChIPSeq_Nipponbare/93-11

Organism:
Oryza sativa
Source name:
seedling shoot
Platform:
GPL9147
Series:
GSE19602
Download data: BED, TAR
Sample
Accession:
GSM489077
ID:
300489077

SRA Run Selector

6.

DNAmethyl_McrBCSeq_Nipponbare/93-11

Organism:
Oryza sativa
Source name:
seedling shoot
Platform:
GPL9147
Series:
GSE19602
Download data: BED, TAR
Sample
Accession:
GSM489073
ID:
300489073

SRA Run Selector

7.

mRNASeq_Nipponbare/93-11

Organism:
Oryza sativa
Source name:
seedling shoot
Platform:
GPL9147
Series:
GSE19602
Download data: TAR
Sample
Accession:
GSM489069
ID:
300489069

SRA Run Selector

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db=gds|term=txid4530[orgn]%20AND%20%22cultivar%20Nipponbare/93-11%22[All%20Fields]|query=1|qty=2|blobid=MCID_663506313ac0d96fcb5ef61f|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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