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95 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Danio rerio		BED
GSE95030	‘Placeholder’ nucleosomes underlie germline-to-embryo DNA methylation reprogramming [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	49	BED BW SRA Run Selector	Patrick Murphy	Dec 12, 2017
GSE268283	tp53 R217H and R242H Mutant Zebrafish Display Dysfunctional p53 Hallmarks and Recapitulate LFS Phenotypes [WGBS]	Methylation profiling by high throughput sequencing	Danio rerio	12	BED TXT	Kim Kobar	May 29, 2024
GSE99566	c-MYC drives neuroblastoma tumorigenesis and retinoic acid resistance in zebrafish [ATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	2	BED SRA Run Selector	Leonard Zon	Jun 01, 2019
GSE99572	c-MYC drives neuroblastoma tumorigenesis and retinoic acid resistance in zebrafish	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	14	BED	Leonard Zon	Jun 01, 2019
GSE41458	Zic3 interacts with distant regulatory elements to regulate zebrafish developmental genes	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	4	BED TXT SRA Run Selector	Vibhor Kumar	Feb 27, 2014
GSE166650	Zebrafish tumors driven by overexpression of human IRF4	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Danio rerio	44	BED BROADPEAK H5	Tze King Tan	Mar 14, 2022
GSE140241	Zebrafish periderm at 4-somite stage	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	10	BED BW TSV	Robert Cornell	Jan 13, 2020
GSE52110	Whole genome methylation profiling in developing and developed Zebrafish	Methylation profiling by high throughput sequencing	Danio rerio	11	BED SRA Run Selector	David McGaughey	Mar 25, 2014
GSE110582	Whole genome mapping of DNA G-quadruplexes in multiple species by G4-seq	Other	Arabidopsis thaliana Caenorhabditis elegans Cereibacter sphaeroides Danio rerio Drosophila melanogaster Escherichia coli Homo sapiens Leishmania major Mus musculus Plasmodium falciparum Saccharomyces cerevisiae Trypanosoma brucei	24	BED BEDGRAPH SRA Run Selector	Giovanni Marsico	Aug 01, 2018
GSE189072	WGBS and RNA-seq of Danio rerio in HSPC generation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Danio rerio	34	BED CSV TXT SRA Run Selector	chao tang	May 10, 2022
GSE232842	Unraveling the whole genome DNA methylation profile of zebrafish kidney marrow through Oxford Nanopore sequencing	Methylation profiling by high throughput sequencing	Danio rerio	12	BED	Xudong Liu	May 19, 2023
GSE256288	Uncoupled H3K9me3 nucleation and reinforcement during early zebrafish embryogenesis	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	57	BED BW	Mary Goll	Jul 22, 2024
GSE120238	Transcriptome profile and Genome-wide chromatin accessibility profile of zebrafish cardiomyocytes throughout heart development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	30	BED	Michal Pawlak	Jan 10, 2019
GSE163483	Transcriptionally regulated energy metabolism drives early erythropoiesis (RRBS)	Methylation profiling by high throughput sequencing	Danio rerio	12	BED SRA Run Selector	Leonard Zon	Jun 09, 2021
GSE136456	Transcriptionally regulated energy metabolism drives early erythropoiesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Danio rerio Homo sapiens	66	BED TXT WIG	Leonard Zon	Jun 09, 2021
GSE79213	The functions of m6A and Ythdf2 during zebrafish early development	Expression profiling by high throughput sequencing Other	Danio rerio	76	BED XLSX SRA Run Selector	Boxuan Simen Zhao	Feb 07, 2017
GSE114038	The Polycomb Group protein Rnf2/Ring1b is essential for zebrafish development and cardiogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	85	BED TXT SRA Run Selector	Leonie M Kamminga	Mar 13, 2019
GSE121991	TETs Regulate Proepicardial Cell Migration through Extracellular Matrix Organization during Zebrafish Cardiogenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Danio rerio	18	BED TXT	Heng Pan	Jan 15, 2019
GSE215987	Single-cell chromatin landscape of non-myocytes reveals AP-1 as a key transcriptional regulator contributing to highly cooperative networks among non-myocyte subtypes during zebrafish heart regeneration [Cut&Tag]	Other	Danio rerio	4	BED	LI QIAN	Feb 26, 2024
GSE215988	Single-cell chromatin landscape of non-myocytes reveals AP-1 as a key transcriptional regulator contributing to highly cooperative networks among non-myocyte subtypes during zebrafish heart regeneration	Genome binding/occupancy profiling by high throughput sequencing Other	Danio rerio	12	BED	LI QIAN	Feb 26, 2024