GEO Browser - GEO

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29 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Macaca mulatta		BED
GSE241429	Comparative single-cell multiome reveals evolutionary innovations in neural progenitor cells during primate corticogenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Macaca mulatta Mus musculus	33	BED MTX TXT	Yiming Sun	Jun 09, 2024
GSE213693	Comparative 3D genomic architectures elucidate the function of the adaptive human-specific inversions in human brain evolution	Other	Homo sapiens Macaca mulatta	2	BED BEDPE	Ying Liu	May 22, 2024
GSE216917	Human gene regulatory evolution is driven by divergence in cis and trans	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Macaca mulatta	22	BED BW TSV	Tyler J Hansen	Dec 22, 2023
GSE197926	TAD Evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Hylobates moloch Macaca mulatta Mus caroli Mus musculus Mus pahari Nomascus leucogenys Rattus norvegicus	85	BED BEDGRAPH BIGWIG BW COOL XLSX	Mariam Okhovat	Oct 20, 2023
GSE90720	Fox Family Protein Jumu Reads 6mA-DNA Codes and Contributes to Zygotic Gene Activation	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Drosophila melanogaster Macaca mulatta Mus musculus Rattus norvegicus	22	BED TXT SRA Run Selector	Shunmin He	Jan 14, 2023
GSE214304	Nascent transcription upon interferon-α2 stimulation on human and rhesus macaque lymphoblastoid cell lines	Other	Homo sapiens Macaca mulatta	12	BED BW	Robin D. Dowell	Oct 02, 2022
GSE167579	Comparative 3D Genome Architecture in Vertebrates (Hi-C)	Other	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus	25	BED HDF5 XLS SRA Run Selector	Mengnan He	Apr 12, 2022
GSE167581	Comparative 3D Genome Architecture in Vertebrates	Expression profiling by high throughput sequencing Other	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	54	BED HDF5 XLS	Mengnan He	Apr 12, 2022
GSE125755	Copper regulation of HIF-1 transcriptional activities	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	4	BED SRA Run Selector	Wenjing Zhang	Jan 24, 2022
GSE153083	ChIP-Seq for Rhesus monkey placenta	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	7	BED SRA Run Selector	Mingan Sun	Jul 31, 2021
GSE175679	Distinct nuclear compartment-associated genome architecture in the developing mammalian brain	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	62	BED BW H5 SRA Run Selector	Tomasz Nowakowski	May 28, 2021
GSE163177	3D Genome of macaque fetal brain reveals evolutionary innovations during primate corticogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	18	BED BEDPE BW HIC NARROWPEAK TXT SRA Run Selector	Yuting Liu	Dec 15, 2020
GSE120271	RNA-seq and ChIP-seq for human-specific regulation of neural maturation identified by cross-primate transcriptomics	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Gorilla Homo sapiens Macaca mulatta Pan paniscus Pan troglodytes	79	BED BEDGRAPH TXT SRA Run Selector	Fred H Gage	Sep 20, 2020
GSE129034	Comparison of chromatin accessibility between human and non-human primates	Genome binding/occupancy profiling by high throughput sequencing	Gorilla gorilla Homo sapiens Macaca mulatta Pan troglodytes Pongo pygmaeus	15	BED SRA Run Selector	Gregory Crawford	Oct 11, 2019
GSE124711	Comparative Analysis of Gammaherpesvirus Circular RNA	Other	Homo sapiens Human gammaherpesvirus 8 Macaca mulatta Macacine gammaherpesvirus 4 Murid herpesvirus 68 Mus musculus	10	BED SRA Run Selector	Erik K Flemington	Jan 07, 2019
GSE115065	Epigenetic maintenance of topological domains in the rearranged gibbon genome	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Macaca mulatta Nomascus leucogenys	6	BED BEDGRAPH	Lucia Carbone	May 30, 2018
GSE83306	Social status alters immune regulation and response to infection [PBMC_ATACseq]	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	3	BED SRA Run Selector	Noah Snyder-Mackler	Dec 31, 2017
GSE70299	The evolution of N6-methyladenosine in primates	Other	Homo sapiens Macaca mulatta Pan troglodytes	16	BED SRA Run Selector	Kevin P. White	Oct 14, 2016
GSE77124	Comparative Methylome Analyses Reveal Human Brain Specific Methylated Regions Implicated in Transcription Regulation	Methylation profiling by high throughput sequencing	Macaca mulatta	2	BED SRA Run Selector	Soojin V Yi	Aug 12, 2016
GSE60838	Evolutionary changes in promoter and enhancer activity during corticogenesis (non-human)	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta Mus musculus	39	BED BW SRA Run Selector	Steven K Reilly	Mar 06, 2015