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26 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens		COV
GSE244520	DNMT3B PWWP mutations cause hypermethylation of heterochromatin.	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	80	BIGWIG COV TXT	Duncan Sproul	Jan 22, 2024
GSE246426	ETV4-Dependent Transcriptional Plasticity Maintains MYC Expression and Results in IMiD Resistance in Multiple Myeloma [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	16	BW COV TXT	Benjamin G Barwick	Oct 30, 2023
GSE218512	Epigenetic dynamics during capacitation of naïve human pluripotent stem cells	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	122	COV	Laura Biggins	Oct 03, 2023
GSE243978	Transcriptional heterogeneity overcomes super-enhancer disrupting drug combinations in multiple myeloma [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	8	BW COV TXT	Benjamin G Barwick	Sep 25, 2023
GSE195556	An engineered Sox17 induces somatic to neural stem cell fate transition independently from pluripotency reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	140	COV MTX TSV	Mingxi WENG	Jul 19, 2023
GSE228707	Bisulfite-free base-resolution sequencing of oxidized cytosines (APOBEC-seq) reveals a ubiquitous role of thymine DNA glycosylase in active gene promoters and an interaction with MBD3/NuRD	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	55	COV NARROWPEAK	Moshe Szyf	Jun 30, 2023
GSE222612	Pan-cancer analysis revealed H3K4me1 at bivalent promoters premarks DNA hypermethylation during tumor development and identified the regulatory role of DNA methylation in relation to histone modifications	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	28	BW COV	Cao Qiang	Jan 11, 2023
GSE159040	H3K27me3 shapes DNA methylome by inhibiting UHRF1-mediated H3 ubiquitination [Bisulfite-seq]	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	9	COV SRA Run Selector	Falong Lu	Jun 27, 2022
GSE159043	H3K27me3 shapes DNA methylome by inhibiting UHRF1-mediated H3 ubiquitination	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	23	BED BROADPEAK BW COV	Falong Lu	Jun 27, 2022
GSE104246	DNA methylation profiling of TF bound sites using ChIPBS (ChIP Bisulfite Sequencing)	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	14	BEDGRAPH COV SRA Run Selector	Eric M Mendenhall	Dec 30, 2021
GSE104248	Towards an integrative map of a single cell type's transcription factor landscape	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	16	BEDGRAPH COV	Eric M Mendenhall	Dec 30, 2021
GSE156409	Age-associated cryptic transcription in mammalian stem cells is linked to permissive chromatin at cryptic promoters	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	52	BED BW COV TXT	Weiwei Dang	Jul 15, 2021
GSE167967	ATAC-seq of Multiple Myeloma	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	13	COV TXT SRA Run Selector	Benjamin G Barwick	Mar 03, 2021
GSE150592	DNA methylation analysis in dermal fibroblasts from African ancestry patients with systemic sclerosis	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	30	COV SRA Run Selector	Gary Hardiman	Jan 19, 2021
GSE156723	DNA methyation of intragenic CpG islands are required for differentiation from iPSC to NPC	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	13	COV NARROWPEAK TXT SRA Run Selector	Young-Joon Kim	Jan 06, 2021
GSE158406	De novo DNA methyltransferase activity in colorectal cancer is directed towards H3K36me3 marked CpG island	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	50	BIGWIG COV	Duncan Sproul	Nov 24, 2020
GSE152146	TNF induced inflammatory transcription dynamics and epigenetic changes	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	58	BIGWIG COV TXT SRA Run Selector	Zhuqiang Zhang	Nov 12, 2020
GSE130140	Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Homo sapiens	92	BED BW COV MATRIX NARROWPEAK SF TAR TXT SRA Run Selector	Zhenjia Wang	Aug 19, 2020
GSE136849	Identification and Characterization of the Epigenome and Transcriptome in Human Neonates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	492	BW COV SRA Run Selector	Yong Peng	Aug 09, 2020
GSE85356	DNA methylation repels binding of hypoxia-inducible transcription factors to maintain tumour immunotolerance	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	285	BEDGRAPH COV TSV TXT	Jieyi Xiong	Jun 18, 2020