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53 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Methylation profiling by high throughput sequencing	Homo sapiens		NARROWPEAK
GSE236728	Synthetic essentiality of thymine DNA glycosylase in p53-deficient cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	65	BEDGRAPH BW MTX NARROWPEAK TSV	Zhenyu Shao	Jun 19, 2024
GSE230602	Overcoming Lineage Plasticity and AR-Targeted Therapy Resistance in ZNF397-Deficient Prostate Cancer via TET2 Inhibition	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	51	BW NARROWPEAK TXT	Ping Mu	Apr 05, 2024
GSE197569	Aberrant DNA methylation distorts developmental trajectories in atypical teratoid/rhabdoid tumors	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	31	NARROWPEAK TXT	Kirsi Rautajoki	Mar 04, 2024
GSE230405	TDP-43 stable deficiency leads to transcriptional dysregulation and transposable elements activation via global R-loops and 5hmC landscape alteration [5hmC-Seal-seq]	Methylation profiling by high throughput sequencing	Homo sapiens	7	NARROWPEAK	Bing Yao	Jan 03, 2024
GSE230410	TDP-43 stable deficiency leads to transcriptional dysregulation and transposable elements activation via global R-loops and 5hmC landscape alteration	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	32	NARROWPEAK	Bing Yao	Jan 03, 2024
GSE240438	Epitranscriptome profiling of m6A in colon cancer cell lines	Methylation profiling by high throughput sequencing Other	Homo sapiens	10	BW NARROWPEAK	Samson Mani	Dec 30, 2023
GSE213771	ATAC-seq, RNA-seq and RRBS of TET2-mutant human neutrophils	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	20	BIGWIG NARROWPEAK	Dominique Bonnet	Dec 01, 2023
GSE231834	N6-methyladenosine RNA modification drives a rapid shift to cisplatin resistance in bladder cancer by regulating SLC7A11 expression via YTHDF3 [RIP-seq]	Methylation profiling by high throughput sequencing	Homo sapiens	20	BED BW NARROWPEAK	Emmanuelle Hodara	Nov 08, 2023
GSE231836	N6-methyladenosine RNA modification drives a rapid shift to cisplatin resistance in bladder cancer by regulating SLC7A11 expression via YTHDF3	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	30	BW NARROWPEAK TXT	Emmanuelle Hodara	Nov 08, 2023
GSE211588	CFL1-induced super enhancer RNA m6A modification promotes local chromatin accessibility and oncogenes transcription in pancreatic cancer [m6A-seq]	Methylation profiling by high throughput sequencing	Homo sapiens	32	BW NARROWPEAK	Rui Li	Sep 20, 2023
GSE214550	Multiplex Epigenome Editing of MECP2 to Rescue Rett Syndrome Neurons II	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	24	NARROWPEAK	Xiaonan Guan	Sep 01, 2023
GSE221053	Transposable elements as lineage-specific enhancers in endodermal-lineage cancers	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	30	BROADPEAK BW HIC NARROWPEAK TXT	Konsta Karttunen	Aug 11, 2023
GSE228707	Bisulfite-free base-resolution sequencing of oxidized cytosines (APOBEC-seq) reveals a ubiquitous role of thymine DNA glycosylase in active gene promoters and an interaction with MBD3/NuRD	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	55	COV NARROWPEAK	Moshe Szyf	Jun 30, 2023
GSE153696	Age associated epigenome changes in human mammary epithelial cells	Methylation profiling by high throughput sequencing	Homo sapiens	26	BED NARROWPEAK	Parijat Senapati	Jun 09, 2023
GSE206968	N6-methyladenosine-enhanced FZR1 translation contributes to gemcitabine insensitivity in pancreatic cancer via quiescence maintenance [m6A-seq]	Methylation profiling by high throughput sequencing	Homo sapiens	12	NARROWPEAK	Rui Li	Jun 09, 2023
GSE206969	N6-methyladenosine modification of FZR1 mRNA promotes gemcitabine resistance in pancreatic cancer	Other Methylation profiling by high throughput sequencing	Homo sapiens	15	BW NARROWPEAK	Rui Li	Jun 08, 2023
GSE176533	MeRIP-sequencing for dynamic epi-transcriptomic landscape mapping with disease progression in ER-positive breast cancer	Methylation profiling by high throughput sequencing	Homo sapiens	8	BW NARROWPEAK XLSX SRA Run Selector	Leonie Young	May 16, 2023
GSE193201	Reprogramming of human peripheral blood mononuclear cells into induced mesenchymal stromal cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	30	BW CSV NARROWPEAK TXT	Charles Wang	Mar 22, 2023
GSE221753	Translocation t(6;7) in AML-M4 cell line GDM-1 results in MNX1 activation through enhancer-hijacking	Other Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	14	BED BIGWIG BW NARROWPEAK TSV	Christoph Plass	Feb 27, 2023
GSE182017	Pluripotency-Independent Induction of Human Trophoblast Stem Cells from Fibroblasts	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	114	BED BROADPEAK BW NARROWPEAK TXT	Yosef Buganim	Feb 21, 2023