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55978 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing			SRA Run Selector
GSE10119	Metatranscriptomes of phytoplankton blooms from an ocean acidification mesocosm experiment	Expression profiling by high throughput sequencing	marine metagenome	4	XLS SRA Run Selector	Jack Anthony Gilbert	Feb 08, 2008
GSE10968	Highly integrated epigenome maps in Arabidopsis - transcriptome sequencing	Expression profiling by high throughput sequencing	Arabidopsis thaliana	4	TXT SRA Run Selector	Joseph R Ecker	Apr 21, 2008
GSE11070	A link between RNA metabolism and silencing affecting Arabidopsis development	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by genome tiling array	Arabidopsis thaliana	22	CEL TXT SRA Run Selector	Joseph R Ecker	May 15, 2008
GSE11209	The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	1	TXT SRA Run Selector	Zhong Wang	May 05, 2008
GSE11724	Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	25	TXT SRA Run Selector	Whitehead Institute	Jul 30, 2008
GSE11801	Annotating Low Abundance and Transient RNAs in Yeast using Ultra High-throughput Sequencing	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	16	TXT SRA Run Selector	Gavin Sherlock	Dec 18, 2008
GSE11892	A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	11	TXT SRA Run Selector	Marc Sultan	Jul 03, 2008
GSE12416	TRAMP-mediated RNA surveillance prevents spurious entry of RNAs into the S. pombe siRNA pathway	Expression profiling by high throughput sequencing	Schizosaccharomyces pombe	2	SRA Run Selector	Noah Spies	Sep 02, 2008
GSE12946	Alternative Isoform Regulation in Human Tissue Transcriptomes	Expression profiling by high throughput sequencing	Homo sapiens	16	TXT SRA Run Selector	Shujun Luo	Oct 01, 2008
GSE13028	Response to temperature increase is genotype-dependent: A genomic analysis of marine larvae	Expression profiling by high throughput sequencing	Magallana gigas	6	SRA Run Selector	Jason Curole	Aug 01, 2011
GSE13441	Drosophila melanogaster short read RNA	Expression profiling by high throughput sequencing	Drosophila melanogaster	5	TXT SRA Run Selector	Marijke Jeltje van Baren	Nov 04, 2008
GSE13543	B. anthracis transcriptome analysis using Illumina and SOLiD sequencing	Expression profiling by high throughput sequencing	Bacillus anthracis	8	QUAL TXT SRA Run Selector	Nicholas Bergman	May 01, 2009
GSE13652	Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing	Expression profiling by high throughput sequencing	Homo sapiens	6	TXT SRA Run Selector	Weijun Gao	Nov 19, 2008
GSE13750	Genome-Wide Analysis In Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling	Other Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	8	TXT SRA Run Selector	Nicholas T Ingolia	Feb 12, 2009
GSE14025	A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Xenopus tropicalis	4	BED TXT SRA Run Selector	Gert Jan Veenstra	Sep 15, 2009
GSE14092	An Integrated Network of Androgen Receptor and TMPRSS2-ERG Gene Fusion in Prostate Cancer Progression (II)	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	60	TXT SRA Run Selector	Jindan Yu	May 18, 2010
GSE14782	Mycobacterium marinum chronic infection of adult zebrafish	Expression profiling by array Expression profiling by high throughput sequencing	Danio rerio	8	XML SRA Run Selector	Anna Magdalena Zakrzewska	Jun 30, 2009
GSE15286	Epigenetic modifications and their relationships to smRNA and mRNA transcriptomes in maize	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Zea mays	14	BED FA TXT SRA Run Selector	Xiangfeng Wang	Apr 28, 2009
GSE15408	Metatranscriptomic analysis of an anaerobic ammonium oxidizing community dominated by Kuenenia stuttgartiensis	Expression profiling by high throughput sequencing	Candidatus Kuenenia stuttgartiensis	1	TXT SRA Run Selector	Marc Strous	Mar 25, 2010
GSE15596	modENCODE RNA-Seq of Drosophila cell lines Kc167, CME_W1_Cl.8+, S2-DRSC and ML-DmBG3-c2	Expression profiling by high throughput sequencing	Drosophila melanogaster	8	BEDGRAPH GFF SRA Run Selector	Brenton R Graveley	Apr 08, 2009