GEO Browser - GEO

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23 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Clostridium acetobutylicum
GSE206253	Methyl-SNP-seq reveals dual readouts of methylome and variome at molecule resolution	Other	Clostridium acetobutylicum Escherichia coli Homo sapiens	9	COV VCF	Bo Yan	Jun 19, 2022
GSE134961	Transcriptomic analysis of Arthrobacter sp. CGMCC 3584 responding to pde gene knockout	Expression profiling by array	Arthrobacter sp. Arthrobacter sp. CGMCC 3584 Clostridium acetobutylicum	8	TXT	Huanqing Niu	Jan 01, 2020
GSE138466	Transcriptomic analysis to identify the putative genes under the regulation of two component system BtrK/BtrR in C. acetobutylicum	Expression profiling by array	Clostridium acetobutylicum	8	TXT	Yunpeng Yang	Oct 08, 2019
GSE122256	Detection of carbohydrate-active enzyme genes in the rumen of young lambs	Genome variation profiling by array	Acetivibrio clariflavus Acetivibrio thermocellus Agathobacter rectalis Bacteroides fragilis Bacteroides ovatus Bacteroides sp. Bacteroides thetaiotaomicron Bacteroides xylanisolvens Bifidobacterium adolescentis Bifidobacterium animalis Bifidobacterium longum Butyrivibrio fibrisolvens Butyrivibrio hungatei Cellulomonas fimi Cellulomonas flavigena Cellulosilyticum ruminicola Clostridioides difficile Clostridium acetobutylicum Clostridium beijerinckii Clostridium cellulovorans Enterobacter sp. Enterococcus faecium Epidinium caudatum Epidinium ecaudatum Eudiplodinium maggii Fibrobacter intestinalis Fibrobacter succinogenes Lachnospira eligens Lactococcus lactis Levilactobacillus brevis Limosilactobacillus fermentum Microbiota Neocallimastix frontalis Neocallimastix patriciarum Orpinomyces joyonii Orpinomyces sp. Piromyces communis Piromyces rhizinflatus Piromyces sp. Piromyces sp. 'equi' Polyplastron multivesiculatum Pseudobacteroides cellulosolvens Pseudobutyrivibrio xylanivorans Roseburia hominis Roseburia intestinalis Ruminiclostridium cellulolyticum Ruminococcus albus Ruminococcus champanellensis Ruminococcus flavefaciens Ruminococcus sp. Segatella bryantii Selenomonas ruminantium Xylanibacter ruminicola [Eubacterium] cellulosolvens uncultured Neocallimastigales	6	TXT	Evelyne Forano	Oct 01, 2019
GSE107550	The FibroChip, a functional DNA microarray to monitor cellulolysis and hemicellulolysis activities of rumen microbiota	Expression profiling by array Other	Acetivibrio clariflavus Acetivibrio thermocellus Agathobacter rectalis Bacteroides fragilis Bacteroides ovatus Bacteroides sp. Bacteroides thetaiotaomicron Bacteroides xylanisolvens Bacteroides xylanisolvens XB1A Bifidobacterium adolescentis Bifidobacterium animalis Bifidobacterium longum Butyrivibrio fibrisolvens Butyrivibrio hungatei Cellulomonas fimi Cellulomonas flavigena Cellulosilyticum ruminicola Clostridioides difficile Clostridium acetobutylicum Clostridium beijerinckii Clostridium cellulovorans Enterobacter sp. Enterococcus faecium Epidinium caudatum Epidinium ecaudatum Escherichia coli K-12 Eudiplodinium maggii Fibrobacter intestinalis Fibrobacter succinogenes Fibrobacter succinogenes subsp. succinogenes S85 Lachnospira eligens Lactococcus lactis Levilactobacillus brevis Limosilactobacillus fermentum Neocallimastix frontalis Neocallimastix patriciarum Orpinomyces joyonii Orpinomyces sp. Piromyces communis Piromyces rhizinflatus Piromyces sp. Piromyces sp. 'equi' Polyplastron multivesiculatum Pseudobacteroides cellulosolvens Pseudobutyrivibrio xylanivorans Roseburia hominis Roseburia intestinalis Ruminiclostridium cellulolyticum Ruminococcus albus Ruminococcus champanellensis Ruminococcus flavefaciens Ruminococcus sp. Segatella bryantii Selenomonas ruminantium Xylanibacter ruminicola [Eubacterium] cellulosolvens bovine gut metagenome uncultured Neocallimastigales	14	TXT	Sophie Comtet-Marre	Dec 01, 2017
GSE99546	Transcriptomic analysis of Arthrobacter sp. CGMCC 3584 responding to dissolved oxygen for cAMP production	Expression profiling by array	Arthrobacter sp. Arthrobacter sp. CGMCC 3584 Clostridium acetobutylicum	8	TXT	Huanqing Niu	Jun 02, 2017
GSE72765	Transcriptomic analysis of Clostridium acetobutylicum biofilm cells in repeated-batch fermentation	Expression profiling by array	Arthrobacter sp. Clostridium acetobutylicum Clostridium acetobutylicum DSM 1731	8	TXT	Dong Liu	Sep 09, 2015
GSE68899	Transcriptomic analysis of Clostridium acetobutylicum biofilm cells adsorbed onto fibrous matrix in biobutanol production [I]	Expression profiling by array	Arthrobacter sp. Clostridium acetobutylicum	8	TXT	Dong Liu	May 15, 2015
GSE68900	Transcriptomic analysis of Clostridium acetobutylicum biofilm cells adsorbed onto fibrous matrix in biobutanol production [II]	Expression profiling by array	Arthrobacter sp. Clostridium acetobutylicum Clostridium acetobutylicum DSM 1731	8	TXT	Dong Liu	May 15, 2015
GSE68901	Transcriptomic analysis of Clostridium acetobutylicum biofilm cells adsorbed onto fibrous matrix in biobutanol production	Expression profiling by array	Arthrobacter sp. Clostridium acetobutylicum Clostridium acetobutylicum DSM 1731	16	TXT	Dong Liu	May 15, 2015
GSE48349	Transcriptional profile (mRNA and sRNA) of Clostridium acetobutylicum to metabolite stress, butanol and butyrate	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Clostridium acetobutylicum	84	TXT SRA Run Selector	Blake C. Meyers	Dec 01, 2013
GSE33364	CcpA, a Pleiotropic Key Regulator in Butanol-producing Clostridium acetobutylicum ATCC 824	Expression profiling by array	Clostridium acetobutylicum	8	TXT	Cong Ren	Aug 30, 2012
GSE23071	Comparative genomic and transcriptomic analysis revealed genetic characteristics related to solvent formation and xylose utilization in Clostridium acetobutylicum EA 2018	Expression profiling by array	Clostridium acetobutylicum Clostridium acetobutylicum ATCC 824 Clostridium acetobutylicum EA 2018	12	TXT	Shiyuan Hu	Jul 23, 2012
GSE14433	Clostridium acetobutylicum ATCC 824 (pRDNA7) butyrate stress (0.6%)	Expression profiling by array	Clostridium acetobutylicum Clostridium acetobutylicum ATCC 824	12	TXT	Eleftherios Terry Papoutsakis	Jan 29, 2009
GSE14590	The transcriptional pattern of Clostridium acetobutylicum following the downregulation of CAC0654 using antisense RNA	Expression profiling by array	Clostridium acetobutylicum Clostridium acetobutylicum ATCC 824	11	TXT	Eleftherios Terry Papoutsakis	Jan 29, 2009
GSE6094	Clostridium acetobutylicum ATCC 824 time course with Agilent Arrays	Expression profiling by array	Clostridium acetobutylicum Clostridium acetobutylicum ATCC 824	56	TXT	Eleftherios Terry Papoutsakis	Jul 21, 2008
GSE4992	Clostridium acetobutylicum ATCC 824 butyrate stress (29 mM)	Expression profiling by array	Clostridium acetobutylicum Clostridium acetobutylicum ATCC 824	14	GPR	Eleftherios Terry Papoutsakis	Dec 29, 2007
GSE5008	Clostridium acetobutylicum ATCC 824 butanol stress (50 mM)	Expression profiling by array	Clostridium acetobutylicum Clostridium acetobutylicum ATCC 824	22	GPR	Eleftherios Terry Papoutsakis	Dec 29, 2007
GSE5009	Clostridium acetobutylicum ATCC 824 acetate stress (43 mM)	Expression profiling by array	Clostridium acetobutylicum Clostridium acetobutylicum ATCC 824	17	GPR	Eleftherios Terry Papoutsakis	Dec 29, 2007
GSE5020	Metabolite stress in Clostridium acetobutylicum ATCC 824	Expression profiling by array	Clostridium acetobutylicum Clostridium acetobutylicum ATCC 824	53	GPR	Eleftherios Terry Papoutsakis	Dec 29, 2007