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28 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Fusarium fujikuroi
GSE112636	Diversity of cytosine methylation across the fungi tree of life	Third-party reanalysis Methylation profiling by high throughput sequencing	Agaricus bisporus Aspergillus flavus Aureobasidium pullulans Botrytis cinerea Candida albicans Clavispora lusitaniae Coemansia reversa Coemansia spiralis Coprinopsis cinerea Cordyceps militaris Cryptococcus neoformans var. grubii Flammula alnicola Fusarium fujikuroi Hesseltinella vesiculosa Heterobasidion irregulare Kirkomyces cordensis Laccaria bicolor Lobosporangium transversale Metarhizium robertsii Microbotryum lychnidis-dioicae Mixia osmundae Neurospora crassa Parasitella parasitica Phanerodontia chrysosporium Phycomyces blakesleeanus Plenodomus lingam Pleurotus ostreatus Podospora anserina Postia placenta Pseudogymnoascus destructans Pyricularia oryzae KJ201 Radiomyces spectabilis Saccharomyces cerevisiae Spinellus fusiger Sporobolomyces roseus Syncephalis fuscata Tilletiopsis washingtonensis Uncinocarpus reesii Wolfiporia cocos [Candida] auris	31	TSV TXT XLS SRA Run Selector	Robert J Schmitz	Feb 18, 2019
GSE253160	Evidence of small interfering RNA in the fungus Fusarium fujikuroi (miRNA-Seq)	Non-coding RNA profiling by high throughput sequencing	Fusarium fujikuroi Fusarium oxysporum f. sp. lycopersici	8	CSV	Javier Avalos	Jan 21, 2024
GSE253166	Evidence of small interfering RNA in the fungus Fusarium fujikuroi	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Fusarium fujikuroi Fusarium oxysporum f. sp. lycopersici	14		Javier Avalos	Jan 21, 2024
GSE46033	Genome-wide analyses of Fusarium fujikuroi reveal complex regulation of secondary metabolism and new metabolites	Genome binding/occupancy profiling by high throughput sequencing	Fusarium fujikuroi	4	TXT SRA Run Selector	Kristina M Smith	Oct 16, 2013
GSE80478	Knock-down of the methyltransferase Kmt6 reliefs H3K27me3 and results in induction of cryptic and otherwise silent secondary metabolite gene clusters in Fusarium fujikuroi [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Fusarium fujikuroi	3	BEDGRAPH SRA Run Selector	Ulrich Guldener	Jul 04, 2016
GSE80479	Knock-down of the methyltransferase Kmt6 reliefs H3K27me3 and results in induction of cryptic and otherwise silent secondary metabolite gene clusters in Fusarium fujikuroi	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Fusarium fujikuroi	15	BEDGRAPH XYS	Ulrich Guldener	Jul 04, 2016
GSE237763	Novel insights into the role of the histone variant H2A.Z in the plant pathogen Fusarium fujikuroi [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Fusarium fujikuroi	13	BW	Harald Berger	Apr 02, 2024
GSE237764	Novel insights into the role of the histone variant H2A.Z in the plant pathogen Fusarium fujikuroi [Mnase-seq]	Genome binding/occupancy profiling by high throughput sequencing	Fusarium fujikuroi	2	BW	Harald Berger	Apr 02, 2024
GSE237765	Novel insights into the role of the histone variant H2A.Z in the plant pathogen Fusarium fujikuroi	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Fusarium fujikuroi	25	BW	Harald Berger	Apr 02, 2024
GSE89480	Expression profiles of nine Fusarium fujikuroi strains revealed common and different sets of up-regulated genes	Expression profiling by high throughput sequencing	Fusarium fujikuroi Fusarium oxysporum	30	TXT SRA Run Selector	Ulrich Guldener	Sep 28, 2017
GSE107342	RNAseq analysis of the effects of light and the carS mutation in Fusarium fujikuroi and Fusarium oxysporum	Expression profiling by high throughput sequencing	Fusarium fujikuroi Fusarium oxysporum f. sp. lycopersici	20	TSV SRA Run Selector	Javier Avalos	Jun 01, 2018
GSE159533	Role of the White Collar photoreceptor WcoA on the F. fujikuroi transcriptome	Expression profiling by high throughput sequencing	Fusarium fujikuroi	24	TSV SRA Run Selector	Javier Avalos	Jan 15, 2021
GSE173210	The carP lncRNA is a carS-related regulatory element with broad effects on the Fusarium fujikuroi transcriptome	Expression profiling by high throughput sequencing	Fusarium fujikuroi	12	TSV SRA Run Selector	Javier Avalos	Jul 31, 2021
GSE223375	Role of the CryD photoreceptor on the F. fujikuroi transcriptome	Expression profiling by high throughput sequencing	Fusarium fujikuroi	12	TSV	Javier Avalos	Apr 04, 2023
GSE237762	Novel insights into the role of the histone variant H2A.Z in the plant pathogen Fusarium fujikuroi [RNA-seq]	Expression profiling by high throughput sequencing	Fusarium fujikuroi	10	TXT	Harald Berger	Apr 02, 2024
GSE253159	Evidence of small interfering RNA in the fungus Fusarium fujikuroi (RNA-Seq)	Expression profiling by high throughput sequencing	Fusarium fujikuroi	6	CSV	Javier Avalos	Jan 21, 2024
GSE10692	Nitrogen-regulated genes in Fusarium fujikuroi	Expression profiling by array	Fusarium fujikuroi Fusarium verticillioides	8	FTR	Robert Butchko	Nov 21, 2008
GSE21623	Heterologous expression analysis of wild type Fusarium fujikuroi and Ffvel1deletion strains grown under nitrogen-limiting conditions in liquid media over time.	Expression profiling by array	Fusarium fujikuroi Fusarium verticillioides	12	TXT	Daren W. Brown	Dec 31, 2010
GSE43745	Genome-wide analyses of Fusarium fujikuroi reveal complex regulation of secondary metabolism and new metabolites	Expression profiling by array	Fusarium fujikuroi	15	PAIR	Ulrich Guldener	Jul 01, 2013
GSE43768	Two histone deacetylases, FfHda1 and FfHda2, are important for secondary metabolism and virulence in Fusarium fujikuroi	Expression profiling by array	Fusarium fujikuroi	8	PAIR	Christian Sieber	Oct 05, 2013