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22 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Branchiostoma lanceolatum
GSE255742	An amphioxus neurula stage cell atlas supports a complex scenario for the emergence of vertebrate head mesoderm	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Branchiostoma lanceolatum	6	XLSX TSV BEDGRAPH	Arnau Sebe-Pedros	Apr 10, 2024
GSE169088	3D genomics across the tree of life reveals condensin II as a determinant of architecture type	Other	Acropora millepora Aedes aegypti Agaricus bisporus Aplysia californica Arachis hypogaea Branchiostoma lanceolatum Caenorhabditis elegans Chiloscyllium punctatum Ciona intestinalis Clonorchis sinensis Cristatella mucedo Culex quinquefasciatus Drosophila melanogaster Gallus gallus Homo sapiens Hypsibius dujardini Lethenteron camtschaticum Muntiacus muntjak Muntiacus reevesi Notamacropus eugenii Pleurobrachia bachei Pygocentrus nattereri Python bivittatus Saccharomyces cerevisiae Strongylocentrotus purpuratus Triticum aestivum Xenopus laevis	32	WIG VCF HIC FASTA BEDPE SRA Run Selector	Olga Dudchenko	Apr 23, 2021
GSE102144	Base resolution methylome profiling of Branchiostoma lanceolatum embryos and adult tissues	Methylation profiling by high throughput sequencing	Branchiostoma lanceolatum	10	TXT TSV SRA Run Selector	Ozren Bogdanovic	Aug 15, 2018
GSE106430	Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [RNA-Seq]	Expression profiling by high throughput sequencing	Branchiostoma lanceolatum Danio rerio Oryzias latipes	81	TXT SRA Run Selector	Juan J. Tena	Aug 15, 2018
GSE106431	Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Branchiostoma lanceolatum Danio rerio Oryzias latipes	217	TXT BEDGRAPH BED	Juan J. Tena	Aug 15, 2018
GSE122245	Comparative RNA-seq analysis between control and SU5402 treated amphioxus (Branchiostoma lanceolatum) embryos	Expression profiling by high throughput sequencing	Branchiostoma lanceolatum	24	TXT FASTA SRA Run Selector	Stephanie Bertrand	Jan 01, 2020
GSE148782	Gain of gene regulatory network interconnectivity at the origin of vertebrates [RNA-seq]	Expression profiling by high throughput sequencing	Branchiostoma lanceolatum Danio rerio	33	TXT SRA Run Selector	Juan J. Tena	Feb 26, 2022
GSE148783	Gain of gene regulatory network interconnectivity at the origin of vertebrates	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Branchiostoma lanceolatum Danio rerio Ptychodera flava Xenopus tropicalis	75	TXT TSV	Juan J. Tena	Feb 26, 2022
GSE141609	Evolution of CpH methylation in vertebrate brains	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Apis mellifera Branchiostoma lanceolatum Callorhinchus milii Danio rerio Gallus gallus Lethenteron camtschaticum Monodelphis domestica Octopus bimaculoides Ornithorhynchus anatinus	11	TSV CGMAP SRA Run Selector	Ryan Lister	Oct 26, 2020
GSE166497	RNA-seq data of control and Activin-treated amphioxus ectodermal explants at 11 hpf and 19 hpf.	Expression profiling by high throughput sequencing	Branchiostoma lanceolatum	8	TSV SRA Run Selector	Juan J. Tena	Jan 24, 2022
GSE205498	Transcriptomic evolution across bilaterian tissues	Expression profiling by high throughput sequencing	Aedes aegypti Blattella germanica Bombyx mori Branchiostoma lanceolatum Callorhinchus milii Cloeon dipterum Danio rerio Drosophila melanogaster Episyrphus balteatus Monodelphis domestica Octopus bimaculoides Strigamia maritima Strongylocentrotus purpuratus Tribolium castaneum Xenopus tropicalis	89	TSV	Federica Mantica	Oct 12, 2022
GSE68737	A single 3D chromatin compartment in amphioxus Hox cluster suggests a stepwise evolutionary origin for vertebrate Hox bimodal regulatory topologies	Other Genome binding/occupancy profiling by high throughput sequencing	Branchiostoma lanceolatum Danio rerio	74	SRA Run Selector FA BW BEDGRAPH	Juan J. Tena	Dec 16, 2015
GSE188332	DNA hydroxymethylation profiling of purple sea urchin (Strongylocentrotus purpuratus), european lancelet (Branchiostoma lanceolatum) and zebrafish (Danio rerio) using hMeDIP-seq	Methylation profiling by high throughput sequencing	Branchiostoma lanceolatum Danio rerio Strongylocentrotus purpuratus	8	SRA Run Selector BW	Ksenia Skvortsova	Nov 08, 2021
GSE188334	Base-resolution 5-hydroxymethylcytosine maps of sea urchin and lancelet embryos and adult tissues	Methylation profiling by high throughput sequencing Other	Branchiostoma lanceolatum Danio rerio Strongylocentrotus purpuratus	31	BW BED	Ksenia Skvortsova	Nov 08, 2021
GSE106429	Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [CAGE]	Expression profiling by high throughput sequencing	Branchiostoma lanceolatum	7	SRA Run Selector BEDGRAPH	Juan J. Tena	Aug 15, 2018
GSE136554	Ancient genomic regulatory blocks are a major source for gene deserts in vertebrates after whole genome duplications	Other	Branchiostoma lanceolatum Danio rerio Mus musculus	12	SRA Run Selector BEDGRAPH	Rafael Domínguez Acemel	Mar 23, 2021
GSE106372	Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Branchiostoma lanceolatum	17	SRA Run Selector BED	Juan J. Tena	Aug 15, 2018
GSE106428	Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [ATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Branchiostoma lanceolatum Danio rerio Oryzias latipes	29	SRA Run Selector BED	Juan J. Tena	Aug 15, 2018
GSE148781	Gain of gene regulatory network interconnectivity at the origin of vertebrates [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Branchiostoma lanceolatum Danio rerio	24	SRA Run Selector BED	Juan J. Tena	Feb 26, 2022
GSE166495	ATAC-seq data of control and Activin-treated amphioxus ectodermal explants at 11 hpf and 19 hpf.	Genome binding/occupancy profiling by high throughput sequencing	Branchiostoma lanceolatum	8	SRA Run Selector BED	Juan J. Tena	Jan 24, 2022