96 series
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Accession Title Series type(s) Organism(s) Samples GDS Supplementary Contact Release date
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GSE35050
Extensive conservation of ancient microsynteny across metazoans
  • Link icon Danio rerio
1 Ozren Bogdanovic Jun 21, 2012
GSE133990
FoxH1 represses miR-430 during early embryonic development of zebrafish via non-canonical regulation
  • Link icon Danio rerio
1 Dietmar Rieder Jul 18, 2019
GSE146738
3'GAmES: Systematic refinement of gene termini by mRNA 3' end sequencing
  • Link icon Danio rerio
1 Stefan Ludwig Ameres Mar 11, 2020
GSE71346
Next Generation Sequencing Facilitates Quantitative Analysis of Ochratoxin A treated with 6-48 hpf zebrafish embryos
  • Link icon Danio rerio
2 Ting-Shuan Wu Jul 16, 2018
GSE81863
Genome-wide maps of histone variant H3.3 occupancy in zebrafish cardiomyocytes [H3K27Ac]
  • Link icon Danio rerio
2 Michael Tolstorukov Mar 07, 2017
GSE99566
c-MYC drives neuroblastoma tumorigenesis and retinoic acid resistance in zebrafish [ATAC-Seq]
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2 Leonard Zon Jun 01, 2019
GSE100286
Atac-seq of 2.5 hpf zebrafish embryos
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2 Michael Meier Dec 01, 2017
GSE250450
CUT&RUN profiling of Tfap2a binding genome-wide using zebrafish embryos at 24hpf
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2 Colin Kenny Dec 18, 2023
GSE41458
Zic3 interacts with distant regulatory elements to regulate zebrafish developmental genes
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4 Vibhor Kumar Feb 27, 2014
GSE121988
5hmC (48hpf WT dissected heart) 5hMe-Bead-Integrated Click-seq (5hMe-BIC-seq)
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4 Heng Pan Jan 15, 2019
GSE133437
Genome-wide maps of HPSH-CTCF binding in prim-5 stage zebrafish embryos
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4 Yuvia Alheli Perez Rico Mar 30, 2020
GSE140240
ATAC-seq profile of zebrafish periderm at 4-somite stage
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4 Robert Cornell Jan 13, 2020
GSE150189
Analysis of gene network branching during optic cup morphogenesis in zebrafish
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4 Lorena Buono May 06, 2021
GSE182346
Genetic and epigenetic orchestration of Gfi1aa-Lsd1-cebpa in zebrafish neutrophil development
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4 Mei Wu Aug 20, 2021
GSE215987
Single-cell chromatin landscape of non-myocytes reveals AP-1 as a key transcriptional regulator contributing to highly cooperative networks among non-myocyte subtypes during zebrafish heart regeneration [Cut&Tag]
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4
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LI QIAN Feb 26, 2024
GSE70847
Genome-wide epigenetic cross-talk between DNA methylation and H3K27me3 in zebrafish embryos
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5 Ozren Bogdanovic Jul 22, 2015
GSE20600
Genome-wide identification of putative cis-regulatory elements through epigenetic profiling in zebrafish
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6 Lihua Julie Zhu Feb 25, 2011
GSE77921
SATB2 induces transcriptional programs in melanoma that lead to metastatic behavior [ChIP-Seq]
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6 Leonard Zon Feb 08, 2021
GSE120531
Identification and functional analysis of yap1b: a new Yap family member in teleosts that evolved a divergent transcriptional activation domain.
6 Javier Vázquez-Marín Jun 01, 2019
GSE137987
Chronic glucocorticoid exposure in early development leads to neuroendocrine, metabolic, and immune dysregulation in adult zebrafish
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6 Benjamin L King Oct 28, 2019