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Platform GPL10097 Query DataSets for GPL10097
Status Public on Apr 15, 2010
Title [HsAirwaya520108F] Custom Affymetrix HsAirway array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol See manufacturer's website
 
 
Submission date Feb 23, 2010
Last update date Apr 15, 2010
Contact name Bartley Joseph Brown
E-mail(s) bbrown@eng.uiowa.edu
Phone 319 335 6432
Organization name The University of Iowa
Lab CBCB
Street address 5317
City Iowa City
State/province IA
ZIP/Postal code 52242
Country USA
 
Samples (60) GSM515168, GSM515169, GSM515170, GSM515171, GSM515172, GSM515173 
Series (2)
GSE20502 Human airway epithelial cell comparisons
GSE40445 Gene expression in CF-vs-non CF human airway epithelial cell samples obtained by nasal brushing.

Data table header descriptions
ID Probe set
GB_ACC GenBank Accession Number
Unigene ID
EC
OMIM
RefSeq Transcript ID
Gene Ontology Biological Process
Gene Ontology Cellular Component
Gene Ontology Molecular Function
Pathway
Protein Families
Protein Domains
InterPro
Trans Membrane
cytogentic location
Gene Name
Gene Desc
LocLink ID
mRNA source
mRNA
mrna Accession
mRNA Unigene ID
mRNA Cytogenetic Location
mRNA Gene Name
mRNA Gene Desc
mRNA LocusLink ID
Predicetd mRNABlast evalue
Blast Hs best hit
Blast Hs mRNA best hit
Gene Hs best hit
Gene Desc Hs best hit
Cytogenetic Loc. Hs best hit
Number

Data table
ID GB_ACC Unigene ID EC OMIM RefSeq Transcript ID Gene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function Pathway Protein Families Protein Domains InterPro Trans Membrane cytogentic location Gene Name Gene Desc LocLink ID mRNA source mRNA mrna Accession mRNA Unigene ID mRNA Cytogenetic Location mRNA Gene Name mRNA Gene Desc mRNA LocusLink ID Predicetd mRNABlast evalue Blast Hs best hit Blast Hs mRNA best hit Gene Hs best hit Gene Desc Hs best hit Cytogenetic Loc. Hs best hit Number
1294_at L13852 Hs.16695 --- 191325 NM_003335 6512 // ubiquitin cycle // inferred from electronic annotation --- 5524 // ATP binding // inferred from electronic annotation Proteasome_Degradation // GenMAPP --- --- IPR000594 // UBA/THIF-type NAD/FAD binding fold /// IPR000127 // Ubiquitin-activating enzyme repeat --- 3p21 UBE1L Ubiquitin-activating enzyme E1-like 7318
1552257_a_at NM_015140 Hs.517670 --- --- NM_015140 6464 // protein modification // inferred from electronic annotation --- 16874 // ligase activity // inferred from electronic annotation --- --- --- IPR004344 // Tubulin-tyrosine ligase --- 22q13.31 KIAA0153 KIAA0153 protein 23170
1552258_at NM_052871 Hs.446688 --- --- NM_052871 --- --- --- --- --- --- --- --- 2p11.2 MGC4677 Hypothetical protein MGC4677 112597
1552261_at NM_080735 Hs.2719 --- --- NM_006103 /// NM_080733 /// NM_080734 /// NM_080735 /// NM_080736 6508 // proteolysis and peptidolysis // traceable author statement 5615 // extracellular space // traceable author statement 4867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation --- --- --- "IPR008197 // Whey acidic protein, core region" NP_006094.2 // span:7-29 // numtm:1 /// NP_542771.1 // span:7-29 // numtm:1 /// NP_542772.1 // span:7-26 // numtm:1 /// NP_542774.1 // span:7-29 // numtm:1 20q12-q13.2 WFDC2 WAP four-disulfide core domain 2 10406
1552266_at NM_145004 Hs.521545 --- --- NM_145004 6508 // proteolysis and peptidolysis // inferred from electronic annotation 16021 // integral to membrane // inferred from electronic annotation 4222 // metalloendopeptidase activity // inferred from electronic annotation --- --- --- "IPR002870 // Peptidase M12B, propeptide /// IPR001590 // Peptidase M12B, ADAM/reprolysin /// IPR001762 // Disintegrin" BAC85238.1 // span:105-127 // numtm:1 /// NP_659441.2 // span:680-702 // numtm:1 8p11.23 ADAM32 A disintegrin and metalloproteinase domain 32 203102
1552269_at NM_138796 Hs.171130 --- --- NM_138796 --- --- --- --- --- --- IPR000048 // IQ calmodulin-binding region --- 1q41 LOC128153 Hypothetical protein BC014608 128153
1552272_a_at NM_153359 Hs.515088 --- --- NM_153359 --- --- --- --- --- --- --- --- 19p13.3 MGC24975 Hypothetical protein MGC24975 163154
1552281_at NM_173596 Hs.524506 --- 608730 NM_173596 30001 // metal ion transport // inferred from electronic annotation 16021 // integral to membrane // inferred from electronic annotation 46873 // metal ion transporter activity // inferred from electronic annotation --- --- --- IPR003689 // Zinc transporter ZIP "NP_775867.1 // span:215-237,244-266,286-308,443-465,475-497,509-528 // numtm:6" 12q13.3 SLC39A5 "Solute carrier family 39 (metal ion transporter), member 5" 283375
1552283_s_at NM_024786 Hs.368851 --- --- NM_024786 --- 16021 // integral to membrane // inferred from electronic annotation 46872 // metal ion binding // inferred from electronic annotation --- --- --- "IPR001594 // Zn-finger, DHHC type" "AAQ89036.1 // span:15-37 // numtm:1 /// NP_079062.1 // span:42-64,71-93,174-196,217-239,243-261 // numtm:5" 5p15.33 ZDHHC11 "Zinc finger, DHHC domain containing 11" 79844
1552286_at NM_080653 Hs.534515 --- --- NM_080653 15986 // ATP synthesis coupled proton transport // inferred from electronic annotation 16469 // proton-transporting two-sector ATPase complex // inferred from electronic annotation "46933 // hydrogen-transporting ATP synthase activity, rotational mechanism // inferred from electronic annotation" --- --- --- "IPR002842 // H+-transporting two-sector ATPase, E subunit" --- 2p21 ATP6V1E2 "ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E isoform 2" 90423
1552291_at NM_017861 Hs.223296 --- --- NM_017861 --- --- "16757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation" --- --- --- --- NP_060331.1 // span:188-210 // numtm:1 3q29 FLJ20522 Hypothetical protein FLJ20522 54965
1552296_at NM_153274 Hs.302513 --- 607336 NM_153274 6811 // ion transport // inferred from electronic annotation 16021 // integral to membrane // Unknown 5216 // ion channel activity // inferred from electronic annotation --- --- --- IPR000615 // Bestrophin "NP_695006.1 // span:36-54,75-94 // numtm:2" 1p33-p32.3 VMD2L2 Vitelliform macular dystrophy 2-like 2 266675
1552299_at NM_145025 Hs.486169 --- --- NM_145025 --- --- 5524 // ATP binding // inferred from electronic annotation --- --- --- IPR000850 // Adenylate kinase --- 6q21 C6orf199 Chromosome 6 open reading frame 199 221264
1552301_a_at NM_032854 Hs.143046 --- --- NM_032854 --- --- --- --- --- --- --- --- 17q11.2 CORO6 Coronin 6 84940
1552310_at NM_144597 Hs.352541 --- --- NM_144597 --- --- --- --- --- --- IPR003746 // Protein of unknown function DUF167 --- 15q25.2 MGC29937 Hypothetical protein MGC29937 123207
1552312_a_at NM_005927 Hs.432818 --- 600491 NM_005927 --- 5578 // extracellular matrix (sensu Metazoa) // not recorded 5201 // extracellular matrix structural constituent // not recorded --- --- --- IPR007110 // Immunoglobulin-like "NP_005918.1 // span:5-22,148-170 // numtm:2" 5q32-q33.2 MFAP3 Microfibrillar-associated protein 3 4238
1552318_at AK091818 Hs.159955 --- --- --- --- --- --- --- --- --- IPR006703 // AIG1 family NP_570115.1 // span:273-292 // numtm:1 7q36.1 GIMAP1 "GTPase, IMAP family member 1" 170575
1552326_a_at NM_145020 Hs.132701 --- --- NM_145020 --- --- --- --- --- --- --- --- 18q21.1 FLJ32743 Hypothetical protein FLJ32743 220136
1552327_at NM_152583 Hs.399873 --- --- NM_152583 --- --- --- --- --- --- --- --- Xq22.1 ARMCX4 "Armadillo repeat containing, X-linked 4" 158947
1552330_at NM_145039 Hs.114318 --- --- NM_145039 --- --- --- --- --- scop // a.4.1.Centromere-binding // All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Centromere-binding // 0.0030 "IPR006695 // CENP-B, N-terminal DNA-binding" --- 16q24.3 MGC16385 Hypothetical protein MGC16385 92806

Total number of rows: 23064

Table truncated, full table size 6438 Kbytes.




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Supplementary file Size Download File type/resource
GPL10097_HsAirway_comma_delimited_file_mar_23_2005.csv.gz 1.7 Mb (ftp)(http) CSV
GPL10097_HsAirwaya520108F.cdf.gz 6.9 Mb (ftp)(http) CDF
GPL10097_HsAirwaya520108F.cdf.txt.gz 2.5 Mb (ftp)(http) TXT
GPL10097_HsAirwaya520108F_probeSequences.txt.gz 4.4 Mb (ftp)(http) TXT

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