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Status
Public on Feb 01, 2011
Title
Fusarium graminearum 4x44k
Technology type
spotted oligonucleotide
Distribution
custom-commercial
Organism
Fusarium graminearum
Manufacturer
Agilent Technologies
Manufacture protocol
SurePrint technology: Custom commercial microarrays are manufactured using a non-contact industrial inkjet printing process, in which oligo monomers are deposited uniformly onto specially-prepared glass slides. This in situ synthesis process prints 60-mer length oligonucleotide probes, base-by-base, from digital sequence files. The precise inkjet process enables the delivery of extremely small, accurate volumes (picoliters) of the chemicals to be spotted. Standard phosphoramidite chemistry used in the reactions allows for very high coupling efficiencies to be maintained at each step in the synthesis of the full-length oligonucleotide. Precise quantities are reproducibly deposited “on the fly” and is achieved without stopping, to make contact with the slide surface and without introducing surface-contact feature anomalies.
Submission date
Oct 12, 2010
Last update date
May 08, 2019
Contact name
Linda J Harris
E-mail(s)
Linda.Harris@agr.gc.ca
Phone
613-759-1314
Organization name
Agriculture & Agri-Food Canada (AAFC)
Department
Eastern Cereal & Oilseed Research Centre
Lab
Building #21
Street address
960 Carling Ave.
City
Ottawa
State/province
Ontario
ZIP/Postal code
K1A 0C6
Country
Canada
Samples (88)
GSM607560 , GSM607561 , GSM607562 , GSM607563 , GSM607564 , GSM607565
GSM607566 ,
GSM607567 ,
GSM607568 ,
GSM607569 ,
GSM607570 ,
GSM607571 ,
GSM766153 ,
GSM766154 ,
GSM766155 ,
GSM766156 ,
GSM766157 ,
GSM766158 ,
GSM929368 ,
GSM929369 ,
GSM929370 ,
GSM929371 ,
GSM929372 ,
GSM929373 ,
GSM929374 ,
GSM929375 ,
GSM929376 ,
GSM929377 ,
GSM929378 ,
GSM929379 ,
GSM929380 ,
GSM929381 ,
GSM929382 ,
GSM929383 ,
GSM929384 ,
GSM929385 ,
GSM929386 ,
GSM929387 ,
GSM929388 ,
GSM929389 ,
GSM929390 ,
GSM929391 ,
GSM929392 ,
GSM929393 ,
GSM929394 ,
GSM929395 ,
GSM929396 ,
GSM929397 ,
GSM929398 ,
GSM929399 ,
GSM929400 ,
GSM929401 ,
GSM929402 ,
GSM929403 ,
GSM929404 ,
GSM929405 ,
GSM929406 ,
GSM929407 ,
GSM929408 ,
GSM929409 ,
GSM929410 ,
GSM929411 ,
GSM929412 ,
GSM929413 ,
GSM929414 ,
GSM929415 ,
GSM929416 ,
GSM929417 ,
GSM929418 ,
GSM929419 ,
GSM2677790 ,
GSM2677791 ,
GSM2677792 ,
GSM2677793 ,
GSM2677794 ,
GSM2677795 ,
GSM2677796 ,
GSM2677797 ,
GSM2677798 ,
GSM2677799 ,
GSM2677800 ,
GSM2677801 ,
GSM2677802 ,
GSM2677803 ,
GSM2677804 ,
GSM2677805 ,
GSM2677806 ,
GSM2677807
Series (4)
GSE24636
Effect of salicylic acid on Fusarium graminearum, the major causal agent of fusarium head blight in wheat
GSE30892
Tri6 is a global transcription regulator in the phytopathogen Fusarium graminearum
GSE37886
Transcriptional profiling of the plant pathogen Fusarium graminearum on three cereal hosts.
GSE100318
Effect of L-tryptophan, tryptamine and indole-3 acetaldehyde on gene expression in Fusarium graminearum
Relations
Alternative to
GPL26641
Data table header descriptions
ID
description
Block
Column
Row
Oligo id
all oligos IDs designed to represent Fusarium graminearum ORFs begin with CUST - all other oligos are controls/spiking controls.
ORF
SPOT_ID
Data table
ID
description
Block
Column
Row
Oligo id
ORF
SPOT_ID
1
DarkCorner
1
1
1
DarkCorner
--DarkCorner
2
GE_BrightCorner
1
1
1
GE_BrightCorner
--GE_BrightCorner
3
(-)3xSLv1
1
2
1
(-)3xSLv1
--(-)3xSLv1
4
(+)E1A_r60_a135
1
4
1
(+)E1A_r60_a135
--(+)E1A_r60_a135
5
fg07601
1
20
1
CUST_32073_PI390790352
fg07601
6
fg10751
1
21
1
CUST_26002_PI390790352
fg10751
7
fg03529
1
22
1
CUST_27280_PI390790352
fg03529
8
fg10661
1
23
1
CUST_27775_PI390790352
fg10661
9
fg12865
1
24
1
CUST_4998_PI390790352
fg12865
10
fg06470
1
25
1
CUST_530_PI390790352
fg06470
11
fg00397
1
26
1
CUST_14124_PI390790352
fg00397
12
fg04836
1
27
1
CUST_12814_PI390790352
fg04836
13
fg01687
1
27
1
CUST_142_PI390790352
fg01687
14
fg07701
1
28
1
CUST_30537_PI390790352
fg07701
15
fgd267-160
1
29
1
CUST_169_PI390790352
fgd267-160
16
fg03279
1
30
1
CUST_31876_PI390790352
fg03279
17
fg05939
1
31
1
CUST_1376_PI390790352
fg05939
18
fg00387
1
32
1
CUST_14206_PI390790352
fg00387
19
fg08359
1
33
1
CUST_27772_PI390790352
fg08359
20
fg06327
1
34
1
CUST_2039_PI390790352
fg06327
Total number of rows: 41448 Table truncated, full table size 2231 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL11046_Custom_Agilent_4X44K_Fusarium_graminearum_LH_01_sequences.txt.gz
915.6 Kb
(ftp) (http)
TXT