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Status
Public on Jun 13, 2005
Title
Yeast Splicing Chip v4.1
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Saccharomyces cerevisiae
Description
This is an oligonucleotide microarray designed to measure splicing in yeast. Each intron containing gene has 3 features (Splice Junction, Intron, Exon2). The SJ oligo symmetrically spans the splice junction with 20nt on each side. The SJ, Int, and Ex2 oligos are custom designed 40-mers. The array also contains about 1000 70-mers from the Operon Yeast Genome Set. All of the SJ, Int, and Ex2 oligos are printed 4 times, the Operon 70-mers are printed only once. Keywords = Splicing
Contributor(s)
Clark TA , Sugnet CW , Ares M , Burckin TA , Nagel RJ
Submission date
Aug 12, 2004
Last update date
Jun 16, 2005
Contact name
Todd A Burckin
E-mail(s)
burckin@biology.ucsc.edu
Phone
831 459-5245
Fax
831 459-3139
Organization name
University of California Santa Cruz
Department
Molecular, Cell, & Developmental Biology
Lab
Hartzog Lab
Street address
1156 High Street
City
Santa Cruz
State/province
CA
ZIP/Postal code
95062
Country
USA
Samples (12)
GSM28829 , GSM28830 , GSM28831 , GSM28832 , GSM28833 , GSM28834
Series (1)
GSE1684
Exploring functional relationships between components of the gene expression machinery
Data table header descriptions
ID
Name
Feature Name
ORF
Yeast ORF
Type
Feature Type
Block
Block that the spot was printed in
Row
Row within the block
Column
Column within the block
SPOT_ID
Data table
ID
Name
ORF
Type
Block
Row
Column
SPOT_ID
1
Cy3
Cy3
1
1
1
Cy3
2
Printing_Buffer
print_buff
1
1
2
Printing_Buffer
3
MTR2_SJ1c
YKL186C
SJ
1
1
3
4
Printing_Buffer
print_buff
1
1
4
Printing_Buffer
5
5.8s_rRNA***POOR***
POOR
1
1
5
5.8s_rRNA
6
18s_rRNA
rRNA
1
1
6
18s_rRNA
7
25s_rRNA
rRNA
1
1
7
25s_rRNA
8
Printing_Buffer
print_buff
1
1
8
Printing_Buffer
9
RPS26A_SJ
YGL189C
SJ
1
1
9
10
RPS29A_SJa***WRONG***
YLR388W
WRONG
1
1
10
11
Printing_Buffer
print_buff
1
1
11
Printing_Buffer
12
Printing_Buffer
print_buff
1
1
12
Printing_Buffer
13
Printing_Buffer
print_buff
1
1
13
Printing_Buffer
14
Printing_Buffer
print_buff
1
1
14
Printing_Buffer
15
RPL26B_SJ
YGR034W
SJ
1
1
15
16
BioB
E_coli
1
1
16
BioB
17
BioC
E_coli
1
1
17
BioC
18
BioD
E_coli
1
1
18
BioD
19
Cre
E_coli
1
1
19
Cre
20
lamB
E_coli
1
1
20
lamB
Total number of rows: 5760 Table truncated, full table size 206 Kbytes .
Supplementary data files not provided