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Status
Public on Jun 13, 2005
Title
Yeast Splicing Chip v4.1
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Saccharomyces cerevisiae
Description
This is an oligonucleotide microarray designed to measure splicing in yeast. Each intron containing gene has 3 features (Splice Junction, Intron, Exon2). The SJ oligo symmetrically spans the splice junction with 20nt on each side. The SJ, Int, and Ex2 oligos are custom designed 40-mers. The array also contains about 1000 70-mers from the Operon Yeast Genome Set. All of the SJ, Int, and Ex2 oligos are printed 4 times, the Operon 70-mers are printed only once.
Contributor(s)
Clark TA , Sugnet CW , Ares M , Burckin TA , Nagel RJ Submission date
Aug 12, 2004
Last update date
Jun 16, 2005
Contact name
Todd A Burckin
E-mail(s)
burckin@biology.ucsc.edu Phone
831 459-5245
Fax
831 459-3139
Organization name
University of California Santa Cruz
Department
Molecular, Cell, & Developmental Biology
Lab
Hartzog Lab
Street address
1156 High Street
City
Santa Cruz
State/province
CA
ZIP/Postal code
95062
Country
USA
Samples (12)
GSM28829 , GSM28830 , GSM28831 , GSM28832 , GSM28833 , GSM28834
Series (1)
GSE1684 Exploring functional relationships between components of the gene expression machinery
Data table header descriptions ID
Name Feature Name
ORF Yeast ORF
Type Feature Type
Block Block that the spot was printed in
Row Row within the block
Column Column within the block
SPOT_ID
Data table ID Name ORF Type Block Row Column SPOT_ID 1
Cy3
Cy3
1
1
1
Cy3
2
Printing_Buffer
print_buff
1
1
2
Printing_Buffer
3
MTR2_SJ1c
YKL186C SJ
1
1
3
4
Printing_Buffer
print_buff
1
1
4
Printing_Buffer
5
5.8s_rRNA***POOR***
POOR
1
1
5
5.8s_rRNA
6
18s_rRNA
rRNA
1
1
6
18s_rRNA
7
25s_rRNA
rRNA
1
1
7
25s_rRNA
8
Printing_Buffer
print_buff
1
1
8
Printing_Buffer
9
RPS26A_SJ
YGL189C SJ
1
1
9
10
RPS29A_SJa***WRONG***
YLR388W WRONG
1
1
10
11
Printing_Buffer
print_buff
1
1
11
Printing_Buffer
12
Printing_Buffer
print_buff
1
1
12
Printing_Buffer
13
Printing_Buffer
print_buff
1
1
13
Printing_Buffer
14
Printing_Buffer
print_buff
1
1
14
Printing_Buffer
15
RPL26B_SJ
YGR034W SJ
1
1
15
16
BioB
E_coli
1
1
16
BioB
17
BioC
E_coli
1
1
17
BioC
18
BioD
E_coli
1
1
18
BioD
19
Cre
E_coli
1
1
19
Cre
20
lamB
E_coli
1
1
20
lamB
5760 206 Kbytes .Supplementary data files not provided
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