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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 08, 2011 |
| Title |
Illumina HiSeq 2000 (Escherichia coli) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Escherichia coli |
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|
| Submission date |
Sep 08, 2011 |
| Last update date |
Jun 28, 2017 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (763)
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GSM792092, GSM792094, GSM792096, GSM792098, GSM792100, GSM792102
GSM792104, GSM792106, GSM792108, GSM825356, GSM825357, GSM872399, GSM997755, GSM997756, GSM997757, GSM997758, GSM997759, GSM997760, GSM997761, GSM997762, GSM1130902, GSM1130903, GSM1130904, GSM1130905, GSM1130906, GSM1170026, GSM1170027, GSM1170029, GSM1170030, GSM1170031, GSM1170032, GSM1170033, GSM1170034, GSM1170035, GSM1170036, GSM1170037, GSM1170038, GSM1217967, GSM1217968, GSM1217969, GSM1217970, GSM1300279, GSM1300282, GSM1309994, GSM1309995, GSM1309996, GSM1309997, GSM1310003, GSM1310004, GSM1310005, GSM1310006, GSM1360030, GSM1360031, GSM1360032, GSM1360033, GSM1360034, GSM1360035, GSM1360036, GSM1360037, GSM1360038, GSM1360039, GSM1360040, GSM1360041, GSM1360042, GSM1360043, GSM1360044, GSM1360045, GSM1360046, GSM1360047, GSM1360048, GSM1360049, GSM1360050, GSM1360051, GSM1360052, GSM1360053, GSM1367304, GSM1367305, GSM1367306, GSM1367307, GSM1367308, GSM1367309, GSM1367310, GSM1405877, GSM1405878, GSM1405879, GSM1405880, GSM1405881, GSM1405882, GSM1415556, GSM1415557, GSM1415867, GSM1415868, GSM1415869, GSM1415870, GSM1415871, GSM1415872, GSM1430425, GSM1430426, GSM1430427, GSM1430428, GSM1430429, GSM1430430, GSM1430431, GSM1430432, GSM1436266, GSM1436267, GSM1436268, GSM1436269, GSM1436270, GSM1436273, GSM1436274, GSM1436275, GSM1436276, GSM1436277, GSM1436280, GSM1436281, GSM1436282, GSM1436283, GSM1436284, GSM1442814, GSM1442815, GSM1442816, GSM1442817, GSM1442818, GSM1465035, GSM1465036, GSM1465037, GSM1465038, GSM1526511, GSM1526512, GSM1537644, GSM1537645, GSM1537646, GSM1537647, GSM1558083, GSM1558084, GSM1558085, GSM1558086, GSM1590712, GSM1590713, GSM1590714, GSM1590715, GSM1590716, GSM1590717, GSM1590718, GSM1590719, GSM1590720, GSM1590721, GSM1590722, GSM1590723, GSM1590724, GSM1646283, GSM1646284, GSM1646285, GSM1646286, GSM1646287, GSM1646288, GSM1646289, GSM1646290, GSM1646291, GSM1646292, GSM1646293, GSM1646294, GSM1646295, GSM1646296, GSM1646297, GSM1646298, GSM1646299, GSM1646300, GSM1646301, GSM1646302, GSM1646303, GSM1646304, GSM1646305, GSM1646306, GSM1646307, GSM1646308, GSM1646309, GSM1646310, GSM1646311, GSM1646312, GSM1646313, GSM1646314, GSM1646315, GSM1646316, GSM1646317, GSM1646318, GSM1708706, GSM1708707, GSM1708708, GSM1708709, GSM1708710, GSM1708711, GSM1708712, GSM1708713, GSM1708714, GSM1708715, GSM1708716, GSM1708717, GSM1708718, GSM1708719, GSM1708720, GSM1708721, GSM1708722, GSM1708723, GSM1708724, GSM1708725, GSM1708726, GSM1708727, GSM1708728, GSM1708729, GSM1708730, GSM1708731, GSM1708732, GSM1708733, GSM1831359, GSM1831360, GSM1831361, GSM1831362, GSM1831363, GSM1831364, GSM1831365, GSM1831366, GSM1831367, GSM1831781, GSM1831782, GSM1904959, GSM1904960, GSM1904961, GSM1904962, GSM1910812, GSM1910813, GSM1910814, GSM1968346, GSM1968347, GSM1968348, GSM1968349, GSM1968350, GSM1968351, GSM1968352, GSM1968353, GSM2045608, GSM2045609, GSM2045610, GSM2045611, GSM2045613, GSM2045614, GSM2045617, GSM2045619, GSM2045621, GSM2045622, GSM2045623, GSM2045624, GSM2045625, GSM2045626, GSM2045627, GSM2045628, GSM2045629, GSM2045630, GSM2045631, GSM2045632, GSM2045633, GSM2045634, GSM2045635, GSM2045636, GSM2045637, GSM2045638, GSM2045639, GSM2049254, GSM2049255, GSM2049256, GSM2049257, GSM2049258, GSM2049259, GSM2049260, GSM2049261, GSM2049262, GSM2049263, GSM2049264, GSM2049265, GSM2049266, GSM2049267, GSM2049268, GSM2049269, GSM2049270, GSM2049271, GSM2049272, GSM2049273, GSM2049274, GSM2049275, GSM2049276, GSM2049277, GSM2055244, GSM2055255, GSM2055260, GSM2055261, GSM2055262, GSM2055285, GSM2075722, GSM2075723, GSM2127617, GSM2127618, GSM2127619, GSM2127620, GSM2127621, GSM2157648, GSM2157649, GSM2157650, GSM2157651, GSM2157652, GSM2157653, GSM2157654, GSM2157655, GSM2157656, GSM2157657, GSM2211026, GSM2211027, GSM2211028, GSM2211029, GSM2211030, GSM2251955, GSM2251956, GSM2251957, GSM2251958, GSM2251959, GSM2251960, GSM2251961, GSM2251962, GSM2321583, GSM2321584, GSM2321585, GSM2321586, GSM2322588, GSM2322589, GSM2322590, GSM2322591, GSM2322592, GSM2322593, GSM2341961, GSM2341962, GSM2341963, GSM2341964, GSM2341965, GSM2341966, GSM2344783, GSM2344784, GSM2344785, GSM2344786, GSM2344787, GSM2344788, GSM2344789, GSM2344790, GSM2344791, GSM2344792, GSM2344793, GSM2344794, GSM2344795, GSM2344796, GSM2344797, GSM2344798, GSM2344799, GSM2344800, GSM2344801, GSM2344802, GSM2344803, GSM2344804, GSM2344805, GSM2344806, GSM2344807, GSM2344808, GSM2344809, GSM2344810, GSM2344811, GSM2344812, GSM2418921, GSM2418922, GSM2418923, GSM2492643, GSM2492644, GSM2492645, GSM2492646, GSM2501621, GSM2501622, GSM2535430, GSM2535431, GSM2535432, GSM2535433, GSM2535434, GSM2535435, GSM2535436, GSM2535437, GSM2535438, GSM2535439, GSM2535440, GSM2535441, GSM2535442, GSM2535443, GSM2535444, GSM2535445, GSM2608039, GSM2608040, GSM2679694, GSM2679696, GSM2679698, GSM2679700, GSM2770996, GSM2770997, GSM2770998, GSM2770999, GSM2771000, GSM2771001, GSM2771002, GSM2771010, GSM2771011, GSM2771012, GSM2771013, GSM2771014, GSM2771015, GSM2771016, GSM2771017, GSM2771018, GSM2771019, GSM2771020, GSM2771021, GSM2771022, GSM2771023, GSM2771024, GSM2771025, GSM2771026, GSM2771027, GSM2771028, GSM2818481, GSM2818482, GSM2818483, GSM2818484, GSM2818485, GSM2818486, GSM2818487, GSM2818488, GSM2818489, GSM2818490, GSM2818491, GSM2818492, GSM2864870, GSM2864871, GSM2992380, GSM2992381, GSM2992382, GSM2992383, GSM3258497, GSM3258498, GSM3258499, GSM3258500, GSM3258501, GSM3258502, GSM3455897, GSM3455898, GSM3455899, GSM3455900, GSM3587866, GSM3587867, GSM3587868, GSM3587869, GSM3587870, GSM3587871, GSM3587872, GSM3587873, GSM3587874, GSM3587875, GSM3588852, GSM3588853, GSM3588854, GSM3588855, GSM3588856, GSM3588857, GSM3588858, GSM3588859, GSM3588860, GSM3588861, GSM3588862, GSM3588863, GSM3906079, GSM3906080, GSM3906081, GSM3906082, GSM3906083, GSM3906084, GSM3906085, GSM3906086, GSM3906087, GSM4211191, GSM4211192, GSM4211193, GSM4211194, GSM4211195, GSM4211196, GSM4211197, GSM4211198, GSM4211199, GSM4211200...
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| Series (84)
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| GSE31982 |
Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay |
| GSE33367 |
Systematic dissection of regulatory motifs in 2,000 predicted human enhancers using a massively parallel reporter assay |
| GSE35641 |
The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria |
| GSE40603 |
Global spatial organization of γ proteobacterial nucleoids is determined by specific long-range interactions (E. coli) |
| GSE43408 |
Quantitative Different Analysis of antimicrobial peptide LL37 expressed in E.coli Top 10 under aerobic and anaerobic condition. |
| GSE46479 |
Ultra-deep RNA-seq of in vitro and in vivo transcripts by Escherichia coli RNA polymerase |
| GSE48151 |
Directional RNA-seq reveals highly complex condition-dependent transcriptomes in E. coliK12 through accurate full-length transcripts assembling |
| GSE53767 |
Absolute quantification of protein production reveals principles underlying protein synthesis rates |
| GSE54199 |
Transcriptome and marker frequency analysis of E. coli (control vs. Trimethoprim) and S. pneumoniae (control vs. HPUra/Kanamycin) |
| GSE56372 |
Correcting Direct Effects of Ethanol on Translation and Transcription Machinery Confers Ethanol Tolerance in Bacteria [Ribosome_Profiling] |
| GSE56408 |
Correcting Direct Effects of Ethanol on Translation and Transcription Machinery Confers Ethanol Tolerance in Bacteria |
| GSE56720 |
Nascent elongating transcript sequencing (NET-seq) for Escherichia coli and Bacillus subtilis reveals a consensus pause sequence enriched at translation start sites. |
| GSE58285 |
Direct entry by RNase E is a major pathway for the degradation and processing of RNA in Escherichia coli |
| GSE58623 |
BolA is a transcriptional switch that turns off motility and turns on biofilm development (ChIP-seq) |
| GSE58637 |
MicL, a new σE-dependent sRNA, combats envelope stress by repressing synthesis of Lpp, the major outer membrane lipoprotein |
| GSE58927 |
Aromatic inhibitors derived from ammonia-pretreated lignocellulose hinder bacterial ethanologenesis by activating regulatory circuits controlling inhibitor efflux and detoxification |
| GSE59397 |
Aromatic inhibitors derived from ammonia-pretreated lignocellulose hinder bacterial ethanologenesis by activating regulatory circuits controlling inhibitor efflux and detoxification (V) |
| GSE59682 |
Transcriptome analysis of Escherichia coli under deoxynivalenol and nivalenol conditions |
| GSE60107 |
Next generation sequencing analysis reveals that the ribonucleases RNase II, RNase R and PNPase affect bacterial motility and biofilm formation in E. coli |
| GSE62394 |
Transcriptomic analysis of VBNC Escherichia coli O157:H7 induced by HPCD by high-throughput Illumina sequencing technology |
| GSE62987 |
RIP-seq of RNA associated in vivo with the ProQ, Hfq or CsrA proteins, performed in Salmonella Typhimurium SL1344 or Escherichia coli W3110 |
| GSE62988 |
Partitioning of a RNA interactome by gradient profiling (Grad-seq) |
| GSE63817 |
Secondary structure across the bacterial transcriptome reveals versatile roles in mRNA regulation and function |
| GSE65244 |
Temporal gene expression in Escherichia coli |
| GSE67402 |
Controlled measurement and comparative analysis of cellular components in E. coli reveals broad regulatory changes under long-term starvation |
| GSE69782 |
Deep sequencing reveals mRNA recruitment in translation initiation |
| GSE71249 |
Quantitative Genomic Analysis of RecA Protein Binding During DNA Double-Strand Break Repair Reveals RecBCD Action in vivo |
| GSE71279 |
Genome-scale high-resolution mapping of activating and repressive nucleotides in regulatory regions |
| GSE73885 |
Comparative transcriptomics of the virulence regulons of enteropathogenic Escherichia coli from diverse phylogenomic lineages |
| GSE74121 |
Transcriptome analysis of E. coli and P. aeruginosa expressing endolysin wild type and mutant in vivo |
| GSE75818 |
Spatial organization shapes the turnover of a bacterial transcriptome |
| GSE77181 |
RecG Directs DNA Synthesis During Double-Strand Break Repair [ChIP-seq] |
| GSE77183 |
RecG Directs DNA Synthesis During Double-Strand Break Repair [Chromosomal marker frequency analysis] |
| GSE77184 |
RecG Directs DNA Synthesis During Double-Strand Break Repair |
| GSE77325 |
Gene expression analysis of E. coli strains provides insights into the role of gene regulation in diversification |
| GSE77617 |
Operon mRNAs are organized into ORF-centric structures that predict translation efficiency |
| GSE78756 |
Quantifying variation within the bacterial species E. coli |
| GSE80451 |
Transcriptome analysis of E. coli REL4536 grown aerobically and anaerobically |
| GSE81584 |
Mfd alters global transcription patterns in undamaged Escherichia coli cells |
| GSE83617 |
Global analyses of RNA G-quadruplexes |
| GSE84830 |
Data Exploration, Quality Control and Statistical Analysis of ChIP-exo/nexus Experiments |
| GSE87071 |
The Escherichia coli nucleoid is shaped around replication and transcription [RNA-Seq] |
| GSE87117 |
The Escherichia coli nucleoid is shaped around replication and transcription [GCC] |
| GSE87118 |
The Escherichia coli nucleoid is shaped around replication and transcription |
| GSE87856 |
The genome-wide transcriptional response to varying RpoS levels in Escherichia coli. |
| GSE88725 |
Global analysis of translation termination in E. coli using release factor manipulations |
| GSE91001 |
PerC manipulates metabolism and surface antigens in enteropathogenic Escherichia coli |
| GSE94978 |
Comparative Transcriptomic Profiling of Antimicrobial Resistant and Virulent Escherichia coli of Poultry Origin |
| GSE95310 |
Cross-talk between species that do not share often the same environment |
| GSE96551 |
Genome-wide analysis of the differentially expressed genes between a butanol-producing wild type strain and a pykA mutant during fermentation |
| GSE98660 |
Natural RNA polymerase aptamers regulate transcription in E. coli [3' RACE] |
| GSE98661 |
Natural RNA polymerase aptamers regulate transcription in E. coli |
| GSE100263 |
Microbiome characterization using transfer RNA sequencing |
| GSE100373 |
The RNA-binding protein Hfq is important for ribosome biogenesis and affects translation fidelity |
| GSE103421 |
A stress response that monitors and regulates mRNA structure is central to cold-shock adaptation |
| GSE105112 |
Structural characterization of ribosome variants |
| GSE107329 |
E. coli MazF does not create specialized ribosomes that translate leaderless mRNAs, but instead blocks rRNA maturation and ribosome biogenesis [5'OH-seq] |
| GSE107330 |
E. coli MazF does not create specialized ribosomes that translate leaderless mRNAs, but instead blocks rRNA maturation and ribosome biogenesis |
| GSE110493 |
The antibiotics potentiator bicarbonate causes upregulation of tryptophanase and iron acquisition proteins in Escherichia coli |
| GSE122129 |
Retapamulin-assisted Ribo-seq reveals the alternative bacterial proteome |
| GSE126008 |
Isolating the Escherichia coli transcriptomic responses to superoxide generation and stress from cadmium chalcogenide quantum dots |
| GSE126019 |
NGS of 3'-termini of tRNA from E. coli |
| GSE133348 |
Transcriptome analysis of Escherichia coli K-12 MG1655 under toxoflavin and troplone conditions |
| GSE141694 |
Phenotypic and transcriptomic characterization of ElyC-defective Escherichia coli cells reveal the importance of ElyC in cell envelope biosynthesis at optimal and sub-optimal temperatures |
| GSE142291 |
Dynamic landscape of protein occupancy across the Escherichia coli chromosome |
| GSE145571 |
Estimation of peptide elongation times from ribosome profiling spectra |
| GSE146240 |
Polysomes bypass a 50 nucleotide coding gap less efficiently than monosomes due to attenuation of an unstable 5’ mRNA stem loop stimulator and enhanced drop-off |
| GSE152664 |
Genetic circuit characterization by inferring RNA polymerase movement and ribosome usage |
| GSE156896 |
Regulatory proteins control a transcriptional network in response to antibiotic stress |
| GSE157014 |
4U-DMS-MaP probing of nascent ribosomes |
| GSE158198 |
RNA-seq of Escherichia coli MG1655 and SR under fluctuating ammonia availability (limitation-depletion) |
| GSE158461 |
Phenotypic modifications of bacteria-plasmid coevolution facilitate gut colonization |
| GSE162978 |
Comparative transcriptomic analysis of Crohn's-associated Escherichia coli in laboratory and host environments |
| GSE169069 |
Transcriptomic analysis of acquired resistance to a novel trimethoprim-based photoswitchable antibiotic in Escherichia coli CS1562 |
| GSE178890 |
G-quadruplex DNA as a target for pathogenic bacteria: efficacy of an extended naphthalene diimide ligand and mode of action |
| GSE179434 |
Next Generation Sequencing Facilitates Quantitative Analysis of E.coli, Wild Type and ΔrecA Transcriptomes |
| GSE189181 |
Ubiquitous mRNA decay fragments in E. coli redefine the functional transcriptome |
| GSE191318 |
Degradation of the E. coli essential proteins DapB and Dxr results in oxidative stress which contributes 2 to the lethality through incomplete BER |
| GSE194212 |
single-nucleotide resolution sequencing of N6-methyladenine in E. coli genomes and mammalian mitochondrial DNA |
| GSE199389 |
Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and CRP-E182D Transcriptomes |
| GSE233932 |
Discovery of diverse DNA cytosine deaminases enables a single-enzyme method for base resolution methylation detection |
| GSE256167 |
An isogenic E. coli population gives rise to multiple persister phenotypes |
| GSE261061 |
Epithelial relay of microbial signals coordinates intestinal macrophage supported barrier repair [E. coli strains] |
| GSE266226 |
Functional CRISPR-Cas9 knockout screening of the genetic determinants of human fibroblast migration propensity |
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| Supplementary data files not provided |
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