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Status
Public on Nov 17, 2011
Title
NimbleGen E. coli K12 Gene Expression Array [071112_Ecoli_K12_EXP]
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Escherichia coli K-12 Manufacturer
NimbleGen
Manufacture protocol
High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
Description
NimbleGen design name 071112 Ecoli K12 EXP X4, NimbleGen Catalog No. A6697-00-01. A 4x72K expression design for 4,254 genes from Escherichia coli K12 with eight 60-mer probe pairs (PM/MM) per gene. Each probe is replicated 2 times. The design includes random GC and other control probes.
Submission date
Oct 03, 2011
Last update date
Jul 31, 2018
Organization
NimbleGen Systems, Inc.
E-mail(s)
geo@ncbi.nlm.nih.gov Phone
608-218-7600
URL
http://www.nimblegen.com/ Street address
504 S. Rosa Road
City
Madison
State/province
WI
ZIP/Postal code
53719
Country
USA
Samples (172)
GSM807119 , GSM807120 , GSM807121 , GSM807122 , GSM807123 , GSM807124
GSM807125 ,
GSM807126 ,
GSM807127 ,
GSM807128 ,
GSM807129 ,
GSM867268 ,
GSM867269 ,
GSM867270 ,
GSM867271 ,
GSM867272 ,
GSM867273 ,
GSM867274 ,
GSM1010240 ,
GSM1010241 ,
GSM1010242 ,
GSM1010243 ,
GSM1126445 ,
GSM1126446 ,
GSM1129890 ,
GSM1129891 ,
GSM1129892 ,
GSM1129893 ,
GSM1129894 ,
GSM1129895 ,
GSM1210407 ,
GSM1210408 ,
GSM1210409 ,
GSM1210410 ,
GSM1210411 ,
GSM1210412 ,
GSM1210413 ,
GSM1210414 ,
GSM1210415 ,
GSM1282891 ,
GSM1282892 ,
GSM1282893 ,
GSM1282894 ,
GSM1282895 ,
GSM1282896 ,
GSM1338229 ,
GSM1338230 ,
GSM1338231 ,
GSM1338232 ,
GSM1338233 ,
GSM1338234 ,
GSM1419875 ,
GSM1419876 ,
GSM1419877 ,
GSM1419878 ,
GSM1419879 ,
GSM1419880 ,
GSM1419881 ,
GSM1419882 ,
GSM1419883 ,
GSM1419884 ,
GSM1419885 ,
GSM1419886 ,
GSM1419887 ,
GSM1419888 ,
GSM1419889 ,
GSM1419890 ,
GSM1419891 ,
GSM1419892 ,
GSM1419893 ,
GSM1419894 ,
GSM1419895 ,
GSM1419896 ,
GSM1419897 ,
GSM1419898 ,
GSM1419899 ,
GSM1419900 ,
GSM1419901 ,
GSM1419902 ,
GSM1419903 ,
GSM1419904 ,
GSM1419905 ,
GSM1419906 ,
GSM1419907 ,
GSM1419908 ,
GSM1419909 ,
GSM1419910 ,
GSM1654937 ,
GSM1654938 ,
GSM1654939 ,
GSM1654940 ,
GSM1654941 ,
GSM1654942 ,
GSM1654943 ,
GSM1654944 ,
GSM1654945 ,
GSM1654946 ,
GSM1654947 ,
GSM1654948 ,
GSM1723963 ,
GSM1723964 ,
GSM1723965 ,
GSM1723966 ,
GSM1723967 ,
GSM1723968 ,
GSM1723969 ,
GSM1723970 ,
GSM1723971 ,
GSM3015443 ,
GSM3015444 ,
GSM3015445 ,
GSM3015446 ,
GSM3015447 ,
GSM3015448 ,
GSM3015449 ,
GSM3015450 ,
GSM3243092 ,
GSM3243093 ,
GSM3243094 ,
GSM3243095 ,
GSM3243096 ,
GSM3243097 ,
GSM3243098 ,
GSM3243099 ,
GSM3243100 ,
GSM3243101 ,
GSM3243102 ,
GSM3243103 ,
GSM3243104 ,
GSM3243105 ,
GSM3243106 ,
GSM3243107 ,
GSM3243108 ,
GSM3243109 ,
GSM3243110 ,
GSM3243111 ,
GSM3243112 ,
GSM3243113 ,
GSM3243114 ,
GSM3243115 ,
GSM3243116 ,
GSM3243117 ,
GSM3243118 ,
GSM3243119 ,
GSM3243120 ,
GSM3243121 ,
GSM3243122 ,
GSM3243123 ,
GSM3243124 ,
GSM3243125 ,
GSM3243126 ,
GSM3243127 ,
GSM3243128 ,
GSM3243129 ,
GSM3243130 ,
GSM3243131 ,
GSM3243132 ,
GSM3243133 ,
GSM3243134 ,
GSM3243135 ,
GSM3317845 ,
GSM3317846 ,
GSM3317847 ,
GSM3317848 ,
GSM3317849 ,
GSM3317850 ,
GSM3317851 ,
GSM3317852 ,
GSM3317853 ,
GSM3317854 ,
GSM3317855 ,
GSM3317856 Series (18)
GSE32561 Investigating the impact of heterologous expression of the Micrococcus luteus FabH on global transcription in Escherichia coli
GSE35392 Effect of FadR overexpression in an engineered fatty acid overproducer
GSE41189 Expression analysis of Escherichia coli MG1655 K-12 WT and ∆fnr mutant
GSE41195 Genome-scale Analysis of E. coli FNR Reveals Complex Features of Transcription Factor Binding
GSE46412 Expression analysis of Escherichia coli MG1655 K-12 WT and ∆arcA mutant
GSE46415 The response regulator ArcA uses a diverse binding site architechture to globally regulate carbon oxidation in E. coli
GSE49939 Shigella flexneri ntrBC and nac mutant expression analysis
GSE53138 Expression profile of E. coli in response to exogenous addition of isopentenol
GSE55496 Study of 1,4 Butanediol response in Escherichia coli DH1
GSE58806 Aromatic inhibitors derived from ammonia-pretreated lignocellulose hinder bacterial ethanologenesis by activating regulatory circuits controlling inhibitor efflux and detoxification (I)
GSE58927 Aromatic inhibitors derived from ammonia-pretreated lignocellulose hinder bacterial ethanologenesis by activating regulatory circuits controlling inhibitor efflux and detoxification
GSE67735 Escherichia coli facing ionic silver stress: correlation between the genetic, physiological and biochemical responses
GSE70325 Inefficient translation of nsrR constrains behavior of the NsrR regulon in Escherichia coli
GSE110730 Expression analysis of Escherichia coli CC72 before and after osmotic stress
GSE116576 Exoribonucleases coordinate degradation and expression of mRNAs in Escherichia coli at the stationary phase [stabilome]
GSE116577 Exoribonucleases coordinate degradation and expression of mRNAs in Escherichia coli at the stationary phase [transcriptome]
GSE116652 Exoribonucleases coordinate degradation and expression of mRNAs in Escherichia coli at the stationary phase
GSE118058 Pleiotropic effects of the rne∆MTS allele on RNA degradation
Relations Alternative to
GPL25406
Data table header descriptions ID ORF Entrez locus_tag name of the ORF to which the indicated probe is directed.
GENE_ID Entrez GeneID number for the ORF to which the indicated probe is directed.
GENOME_ACC GenBank accession number of the Escherichia coli K12 MG1655 chromosome.
FUNCTION Brief description of predicted protein function for ORF
Data table ID ORF GENE_ID GENOME_ACC FUNCTION b0001071000000001
b0001 944742
NC_000913
thr operon leader peptide
b0002071000000002
b0002 945803
NC_000913
fused aspartokinase I and homoserine dehydrogenase I
b0003071000000003
b0003 947498
NC_000913
homoserine kinase
b0004071000000004
b0004 945198
NC_000913
threonine synthase
b0005071000000005
b0005 944747
NC_000913
predicted protein
b0006071000000006
b0006 944749
NC_000913
conserved protein
b0007071000000007
b0007 944745
NC_000913
predicted transporter
b0008071000000008
b0008 944748
NC_000913
transaldolase B
b0009071000000009
b0009 944760
NC_000913
predicted molybdochelatase
b0010071000000010
b0010 944792
NC_000913
conserved inner membrane protein associated with acetate transport
b0011071000000011
b0011 944771
NC_000913
conserved protein
b0013071000000012
b0013 944751
NC_000913
predicted protein
b0014071000000013
b0014 944750
NC_000913
chaperone Hsp70, co-chaperone with DnaJ
b0015071000000014
b0015 944753
NC_000913
chaperone Hsp40, co-chaperone with DnaK
b0016071000000015
b0016 944754
NC_000913
IS186/IS421 transposase
b0018071000000016
b0018 944756
NC_000913
regulatory protein for HokC, overlaps CDS of hokC
b0019071000000018
b0019 944758
NC_000913
sodium-proton antiporter
b0020071000000019
b0020 944757
NC_000913
DNA-binding transcriptional activator
b0021071000000020
b0021 944743
NC_000913
IS1 transposase InsAB'
b0022071000000021
b0022 948449
NC_000913
KpLE2 phage-like element
4294 316 Kbytes .Supplementary file Size Download File type/resource GPL14649_071112_Ecoli_K12_EXP.ndf.gz
4.4 Mb
(ftp) (http) NDF
GPL14649_071112_Ecoli_K12_EXP.ngd.gz
250.7 Kb
(ftp) (http) NGD
GPL14649_071112_Ecoli_K12_EXP_X4.ncd.gz
242 b
(ftp) (http) NCD
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