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Status
Public on Dec 01, 2011
Title
Agilent-022442 Saccharomyces cerevisiae genotyping v1
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Saccharomyces cerevisiae
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Arrays of this design have barcodes that begin with 16022442 or 2522442 Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
Submission date
Nov 18, 2011
Last update date
Dec 01, 2011
Contact name
Noorossadat Torabi
E-mail(s)
ntorabi@Princeton.EDU
Organization name
Princeton University
Department
Molecular Biology
Lab
Kruglyak
Street address
110 Carl Icahn Lab
City
Princeton
State/province
NJ
ZIP/Postal code
08544
Country
USA
Samples (56)
GSM836274 , GSM836275 , GSM836276 , GSM836277 , GSM836278 , GSM836279
GSM836280 ,
GSM836281 ,
GSM836282 ,
GSM836283 ,
GSM836284 ,
GSM836285 ,
GSM836286 ,
GSM836287 ,
GSM836288 ,
GSM836289 ,
GSM836290 ,
GSM836291 ,
GSM836292 ,
GSM836293 ,
GSM836294 ,
GSM836295 ,
GSM836296 ,
GSM836297 ,
GSM836298 ,
GSM836299 ,
GSM836300 ,
GSM836301 ,
GSM836302 ,
GSM836303 ,
GSM836304 ,
GSM836305 ,
GSM836306 ,
GSM836307 ,
GSM836308 ,
GSM836309 ,
GSM836310 ,
GSM836311 ,
GSM836312 ,
GSM836313 ,
GSM836314 ,
GSM836315 ,
GSM836316 ,
GSM836317 ,
GSM836318 ,
GSM836319 ,
GSM836320 ,
GSM836321 ,
GSM836322 ,
GSM836323 ,
GSM836324 ,
GSM836325 ,
GSM836326 ,
GSM836327 ,
GSM836328 ,
GSM836329
Series (1)
GSE33817
X-QTL performed on wild-type and sup35 (C653R) BY x RM segregants in various growth conditions
Data table header descriptions
ID
SystematicName
CHROMOSOMAL LOCATION
RANGE_GB
GenBank accession
RANGE_START
RANGE_END
SEQUENCE1
By allele
SEQUENCE2
Rm allele
Data table
ID
SystematicName
RANGE_GB
RANGE_START
RANGE_END
SEQUENCE1
SEQUENCE2
chr1_27915Bd
chr1:27904-27927
NC_001133.3
27904
27927
GACAACATTAGCTAATCCCAGCAATTTTTT
GACAACATTAGCTAATCCCAGCAATTTTTT
chr1_28323Bd
chr1:28314-28334
NC_001133.3
28314
28334
TGGTCGTGTATGATGTACCTTTTTTTTTTTT
TGGTCGTGTATGATGTACCTTTTTTTTTTTT
chr1_28354Bu
chr1:28342-28364
NC_001133.3
28342
28364
CATGCATTAATGTGCTCTGAAATTTTTTT
CATGCATTAATGTGCTCTGAAATTTTTTT
chr1_28846Bu
chr1:28836-28855
NC_001133.3
28836
28855
TCTTACATGGCGTCGGTGTATTTTTTTTTT
TCTTACATGGTGTCGGTGTATTTTTTTTTT
chr1_29667Bd
chr1:29653-29681
NC_001133.3
29653
29681
AATAATGATTGTTTCTACAATGAAAATCATTTTTT
AATAATGATTGTTTATACAATGAAAATCATTTTTT
chr1_29667Bu
chr1:29653-29681
NC_001133.3
29653
29681
AATAATGATTGTTTCTACAATGAAAATCATTTTTT
AATAATGATTGTTTATACAATGAAAATCATTTTTT
chr1_30714Bu
chr1:30698-30727
NC_001133.3
30698
30727
CAAGATTCATAACAAAGTTTTTATTTACGATTTTTTTTTT
CAAGATTCATAACAAAGTTTTTATTTACGATTTTTTTTTT
chr1_31059Bu
chr1:31046-31071
NC_001133.3
31046
31071
AAAAGTAAAGTATGATAAAACGGAGCTTTTTT
AAAAGTAAAGTATAATAAAACGGAGCTTTTTT
chr1_31213Bd
chr1:31204-31224
NC_001133.3
31204
31224
TTTCTTCCCATTCAGTTTGCTTTTTTTTTTT
TTTCTTCCCATTCAGTTTGCTTTTTTTTTTT
chr1_31636Bd
chr1:31624-31649
NC_001133.3
31624
31649
GGATTCCAAAATTTTTGAAAAATTCCTTTTTT
GGATTCCAAAATCTTTGAAAAATTCCTTTTTT
chr1_31756Bu
chr1:31745-31765
NC_001133.3
31745
31765
GCTCAAGGATACAGGGTGCAGTTTTTTTTTT
GCTCAAGGATATAGGGTGCAGTTTTTTTTTT
chr1_31849Bd
chr1:31838-31861
NC_001133.3
31838
31861
TTTTTGGGTTTCGAACAGATCTTCTTTTTTTTTT
TTTTTGGGTTTCGAACAGATCTTCTTTTTTTTTT
chr1_32512Bd
chr1:32503-32520
NC_001133.3
32503
32520
GCCCTGTGCTACCCAAAATTTTTTTTTT
GCCCTGTGCTACCCAAAATTTTTTTTTT
chr1_32512Bu
chr1:32503-32520
NC_001133.3
32503
32520
GCCCTGTGCTACCCAAAATTTTTTTTTT
GCCCTGTGCTACCCAAAATTTTTTTTTT
chr1_32653Bd
chr1:32643-32663
NC_001133.3
32643
32663
CAACCAATGCAAAGGATGCAGTTTTTT
CAACCAATGCCAAGGATGCAGTTTTTT
chr1_32653Bu
chr1:32643-32663
NC_001133.3
32643
32663
CAACCAATGCAAAGGATGCAGTTTTTT
CAACCAATGCCAAGGATGCAGTTTTTT
chr1_33201Bu
chr1:33191-33209
NC_001133.3
33191
33209
GGTTAACCACTACGGCTGTTTTTTT
GGTTAACCACTACGGCTGTTTTTTT
chr1_33294Bu
chr1:33282-33304
NC_001133.3
33282
33304
GTCGTAATGTGCTGTAGTAAGGATTTTTTTTTT
GTCGTAATGTGCTGTAGTAAGGATTTTTTTTTT
chr1_33549Bu
chr1:33537-33559
NC_001133.3
33537
33559
TGATTGATATCGAATGGTGTGGTTTTTTT
TGATTGATATCGCATGGTGTGGTTTTTTT
chr1_33613Bd
chr1:33604-33624
NC_001133.3
33604
33624
TTTCCCAGAGGATGGACACACTTTTTTTTTT
TTTCCCAGAGGATGGACACACTTTTTTTTTT
Total number of rows: 21994 Table truncated, full table size 2678 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL14905_022442_D_GEO_20091201.txt.gz
1.1 Mb
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