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Platform GPL14905 Query DataSets for GPL14905
Status Public on Dec 01, 2011
Title Agilent-022442 Saccharomyces cerevisiae genotyping v1
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Saccharomyces cerevisiae
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16022442 or 2522442
Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
 
Submission date Nov 18, 2011
Last update date Dec 01, 2011
Contact name Noorossadat Torabi
E-mail(s) ntorabi@Princeton.EDU
Organization name Princeton University
Department Molecular Biology
Lab Kruglyak
Street address 110 Carl Icahn Lab
City Princeton
State/province NJ
ZIP/Postal code 08544
Country USA
 
Samples (56) GSM836274, GSM836275, GSM836276, GSM836277, GSM836278, GSM836279 
Series (1)
GSE33817 X-QTL performed on wild-type and sup35 (C653R) BY x RM segregants in various growth conditions

Data table header descriptions
ID
SystematicName CHROMOSOMAL LOCATION
RANGE_GB GenBank accession
RANGE_START
RANGE_END
SEQUENCE1 By allele
SEQUENCE2 Rm allele

Data table
ID SystematicName RANGE_GB RANGE_START RANGE_END SEQUENCE1 SEQUENCE2
chr1_27915Bd chr1:27904-27927 NC_001133.3 27904 27927 GACAACATTAGCTAATCCCAGCAATTTTTT GACAACATTAGCTAATCCCAGCAATTTTTT
chr1_28323Bd chr1:28314-28334 NC_001133.3 28314 28334 TGGTCGTGTATGATGTACCTTTTTTTTTTTT TGGTCGTGTATGATGTACCTTTTTTTTTTTT
chr1_28354Bu chr1:28342-28364 NC_001133.3 28342 28364 CATGCATTAATGTGCTCTGAAATTTTTTT CATGCATTAATGTGCTCTGAAATTTTTTT
chr1_28846Bu chr1:28836-28855 NC_001133.3 28836 28855 TCTTACATGGCGTCGGTGTATTTTTTTTTT TCTTACATGGTGTCGGTGTATTTTTTTTTT
chr1_29667Bd chr1:29653-29681 NC_001133.3 29653 29681 AATAATGATTGTTTCTACAATGAAAATCATTTTTT AATAATGATTGTTTATACAATGAAAATCATTTTTT
chr1_29667Bu chr1:29653-29681 NC_001133.3 29653 29681 AATAATGATTGTTTCTACAATGAAAATCATTTTTT AATAATGATTGTTTATACAATGAAAATCATTTTTT
chr1_30714Bu chr1:30698-30727 NC_001133.3 30698 30727 CAAGATTCATAACAAAGTTTTTATTTACGATTTTTTTTTT CAAGATTCATAACAAAGTTTTTATTTACGATTTTTTTTTT
chr1_31059Bu chr1:31046-31071 NC_001133.3 31046 31071 AAAAGTAAAGTATGATAAAACGGAGCTTTTTT AAAAGTAAAGTATAATAAAACGGAGCTTTTTT
chr1_31213Bd chr1:31204-31224 NC_001133.3 31204 31224 TTTCTTCCCATTCAGTTTGCTTTTTTTTTTT TTTCTTCCCATTCAGTTTGCTTTTTTTTTTT
chr1_31636Bd chr1:31624-31649 NC_001133.3 31624 31649 GGATTCCAAAATTTTTGAAAAATTCCTTTTTT GGATTCCAAAATCTTTGAAAAATTCCTTTTTT
chr1_31756Bu chr1:31745-31765 NC_001133.3 31745 31765 GCTCAAGGATACAGGGTGCAGTTTTTTTTTT GCTCAAGGATATAGGGTGCAGTTTTTTTTTT
chr1_31849Bd chr1:31838-31861 NC_001133.3 31838 31861 TTTTTGGGTTTCGAACAGATCTTCTTTTTTTTTT TTTTTGGGTTTCGAACAGATCTTCTTTTTTTTTT
chr1_32512Bd chr1:32503-32520 NC_001133.3 32503 32520 GCCCTGTGCTACCCAAAATTTTTTTTTT GCCCTGTGCTACCCAAAATTTTTTTTTT
chr1_32512Bu chr1:32503-32520 NC_001133.3 32503 32520 GCCCTGTGCTACCCAAAATTTTTTTTTT GCCCTGTGCTACCCAAAATTTTTTTTTT
chr1_32653Bd chr1:32643-32663 NC_001133.3 32643 32663 CAACCAATGCAAAGGATGCAGTTTTTT CAACCAATGCCAAGGATGCAGTTTTTT
chr1_32653Bu chr1:32643-32663 NC_001133.3 32643 32663 CAACCAATGCAAAGGATGCAGTTTTTT CAACCAATGCCAAGGATGCAGTTTTTT
chr1_33201Bu chr1:33191-33209 NC_001133.3 33191 33209 GGTTAACCACTACGGCTGTTTTTTT GGTTAACCACTACGGCTGTTTTTTT
chr1_33294Bu chr1:33282-33304 NC_001133.3 33282 33304 GTCGTAATGTGCTGTAGTAAGGATTTTTTTTTT GTCGTAATGTGCTGTAGTAAGGATTTTTTTTTT
chr1_33549Bu chr1:33537-33559 NC_001133.3 33537 33559 TGATTGATATCGAATGGTGTGGTTTTTTT TGATTGATATCGCATGGTGTGGTTTTTTT
chr1_33613Bd chr1:33604-33624 NC_001133.3 33604 33624 TTTCCCAGAGGATGGACACACTTTTTTTTTT TTTCCCAGAGGATGGACACACTTTTTTTTTT

Total number of rows: 21994

Table truncated, full table size 2678 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL14905_022442_D_GEO_20091201.txt.gz 1.1 Mb (ftp)(http) TXT

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