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Platform GPL17465 Query DataSets for GPL17465
Status Public on Feb 01, 2014
Title Agilent-048534 Rhesus 60k version of 44k 026806 [Probe Name version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Macaca mulatta
Manufacturer Agilent Technologies
Manufacture protocol See manufacturer's web site at http://www.agilent.com/
 
Description Rhesus 60k version of 44k 026806 which is v2 of monkey array.
 
Submission date Jul 17, 2013
Last update date Feb 01, 2014
Contact name Michael Katze
E-mail(s) data@viromics.washington.edu
Organization name University of Washington
Department Microbiology
Lab Michael G. Katze, Ph.D
Street address Rosen Building 960 Republican St.
City Seattle
State/province WA
ZIP/Postal code 98109-4325
Country USA
 
Samples (501) GSM1190990, GSM1190991, GSM1190992, GSM1190993, GSM1190994, GSM1190995 
Series (4)
GSE48976 Cynomolgus macaque model of H7N9 influenza infection
GSE77824 Multivalent Influenza DNA vaccine induces cross-reactive polyfunctional T lymphocytes and promotes rapid clearance of heterologous challenge strain in non-human primates
GSE93835 Strong Vaccine-Elicited Th1-Biased CD4 T cell Response Abrogates SIV Vaccine Efficacy
Relations
Alternative to GPL17463

Data table header descriptions
ID Agilent Probe Name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeq Accession
GB_ACC GenBank or RefSeq Accession
ENTREZ_GENE_ID Gene ID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UniGene ID
ENSEMBL_ID Ensembl ID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE REFSEQ GB_ACC ENTREZ_GENE_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE
A_01_P000001 A_01_P000001 FALSE XM_001103444 704781 MEP1A meprin A, alpha (PABA peptide hydrolase) Mmu.9720 gb|XM_001103444 chr4:46665254-46665313 PREDICTED: Macaca mulatta meprin A, alpha (PABA peptide hydrolase) (MEP1A), mRNA [XM_001103444] AGCAGCACCTCCTCCATGCAGGCCTTATTTTCCCATGGTCAGTGCAGTTTGGGGCAGCTT
A_01_P000002 A_01_P000002 FALSE chr5:080630462-080630521 AGTATGGTGAGTGCCAAAACAGAGTTATGAACACGATATCTATCTGGAAGCACTGAGAAG
A_01_P000003 A_01_P000003 FALSE NM_001168609 NM_001168609 704662 CAPZA2 capping protein (actin filament) muscle Z-line, alpha 2 Mmu.173 ref|NM_001168609|gb|JV662796|gb|JV630231|gb|JV595212 chr3:154247892-154247951 Macaca mulatta capping protein (actin filament) muscle Z-line, alpha 2 (CAPZA2), mRNA [NM_001168609] GGTTTCATTCAATAGAGTATTGCTTATTATACTTGAGTGGAATCCTTTCCTCACATACTC
A_01_P000004 A_01_P000004 FALSE JV633867 Mmu.20650 gb|JV633867|gb|JV636463|gb|JV665980|gb|JV636465 chr15:78064016-78064075 TSA: Macaca mulatta Mamu_186693 mRNA sequence. [JV633867] TGCTGCACAAAAGCAGATACTTGAGGAAAACACTATTTCCAAAAGCACGTGTATTGACAA
A_01_P000005 A_01_P000005 FALSE JV669144 Mmu.22458 gb|JV669144|gb|JV529696|gb|JV602388|gb|JV595058 chr19:6272179-6272238 TSA: Macaca mulatta Mamu_318745 mRNA sequence. [JV669144] TTGAGGAACTTTTAATTTGCAAGGGTGCCCCCTATGGATGGGGCATTCCAGCTGAGACAC
A_01_P000006 A_01_P000006 FALSE ENSMMUT00000005571 ens|ENSMMUT00000005571 chr10:56888885-56888826 cystatin 9 (testatin) [Source:HGNC Symbol;Acc:13261] [ENSMMUT00000005571] GTCTGCGGTTTTATGACTTGGCATTTTAGAAACTCCTCATTGTCCAGGTTCCTCATGTAG
A_01_P000010 A_01_P000010 FALSE JV051555 707872 CNGA3 cyclic nucleotide gated channel alpha 3 Mmu.26723 ENSMMUT00000029814 ens|ENSMMUT00000029814|gb|JV051555|gb|JU338699|gb|JV706782 chr13:98290363-98290422 cyclic nucleotide gated channel alpha 3 [Source:HGNC Symbol;Acc:2150] [ENSMMUT00000029814] AGCAACGTACAGGGAGAGCCTTTTAGATTGAAGGCTGGAGTGGTGTCCTAAACCAAAAAA
A_01_P000011 A_01_P000011 FALSE JU485823 Mmu.4531 gb|JU485823|gb|JV059993|gb|JV650342|gb|JV713913 chr11:103587190-103587131 TSA: Macaca mulatta Mamu_377566 mRNA sequence. [JU485823] AATTTCCCCTGCTACTTTGAAACCAGAAAATAATGACTGGCCATTCATTATATCTGTCTT
A_01_P000012 A_01_P000012 FALSE XM_001118474 XM_001118474 722313 LOC722313 barH-like 1 homeobox protein-like ENSMMUT00000006487 ens|ENSMMUT00000006487|ref|XM_001118474 chr15:6052815-6052756 BarH-like homeobox 1 [Source:HGNC Symbol;Acc:953] [ENSMMUT00000006487] CAACCTGAACCCCGGCGCGGCGCTCTACCTGTACCGCGGCCCCAGCGCGCCGCCGCCCGC
A_01_P000013 A_01_P000013 FALSE JV055251 701783 SLC4A1AP solute carrier family 4 (anion exchanger), member 1, adaptor protein Mmu.14370 ENSMMUT00000027755 ens|ENSMMUT00000027755|ens|ENSMMUT00000043658|gb|JV055251|gb|JV498921 chr13:27675776-27675835 solute carrier family 4 (anion exchanger), member 1, adaptor protein [Source:HGNC Symbol;Acc:13813] [ENSMMUT00000027755] TGGTGACTGGCCTTTCCTTCTGTGTTCTTGGCTTCCTAAATTTATCTGCCCATATGATTC
A_01_P000017 A_01_P000017 FALSE JV056871 705802 ZDHHC20 zinc finger, DHHC-type containing 20 Mmu.18098 ENSMMUT00000010310 ens|ENSMMUT00000010310|gb|JV056871|gb|JV577181|gb|JV463322 chr17:2005334-2005275 zinc finger, DHHC-type containing 20 [Source:HGNC Symbol;Acc:20749] [ENSMMUT00000010310] TAAAAAAGAAGCTTTGTACAGTCCTGGGATCCACAGACGCACTGCTCCAGAGCGGAACGA
A_01_P000018 A_01_P000018 FALSE JU471134 714092 ATG16L1 autophagy related 16-like 1 (S. cerevisiae) Mmu.33997 ENSMMUT00000032865 ens|ENSMMUT00000032865|ens|ENSMMUT00000032859|ens|ENSMMUT00000032861|ens|ENSMMUT00000032863 chr12:97182605-97182664 autophagy-related protein 16-1 [Source:RefSeq peptide;Acc:NP_001248040] [ENSMMUT00000032865] TCACGGGCCAGGGCACATCTTTTATTTATTTCGTTATGTTGCCCAACAGAACTTGATTGT
A_01_P000020 A_01_P000020 FALSE JU475178 718197 LOC718197 ly6/PLAUR domain-containing protein 3-like Mmu.1278 ENSMMUT00000045066 ens|ENSMMUT00000045066|ens|ENSMMUT00000024980|gb|JU475178|gb|XM_001102229 unmapped LY6/PLAUR domain containing 3 [Source:HGNC Symbol;Acc:24880] [ENSMMUT00000045066] ACCGTGCCTTATGCCTGTGTGTGATCAGTTTCTGGCACACAGATGCCTCAATAAAGATTT
A_01_P000023 A_01_P000023 FALSE NM_001194236 NM_001194236 712971 MED31 mediator complex subunit 31 Mmu.18453 ENSMMUT00000005363 ref|NM_001194236|ens|ENSMMUT00000005363|gb|JU475797|gb|JV508588 chr16:6360597-6360538 Macaca mulatta mediator complex subunit 31 (MED31), mRNA [NM_001194236] GGCAGGACAACTAGTGGTTAATTACTAATTGGACTCTTGACTTTAGAACAAACATGAGGA
A_01_P000024 A_01_P000024 FALSE NM_001261345 NM_001261345 706690 GPBP1L1 GC-rich promoter binding protein 1-like 1 Mmu.12403 ENSMMUT00000002774 ref|NM_001261345|ens|ENSMMUT00000002774|gb|JV043934|gb|JU471282 chr1:48534918-48534859 Macaca mulatta GC-rich promoter binding protein 1-like 1 (GPBP1L1), mRNA [NM_001261345] GGGGGGAAATGTGAATTCAGACACAACTGTTCTCTTTTTAGCAGATACTTTTTTGATGCA
A_01_P000028 A_01_P000028 FALSE chr20:056757809-056757868 ATGATGGACTTTGTACATGAATATGTTCTGTACAAGTACTCTTTCTGTCACTAGTACTAC
A_01_P000029 A_01_P000029 FALSE JV058150 Mmu.35743 gb|JV058150|gb|JV648509 chr10:13504048-13503989 TSA: Macaca mulatta Mamu_441393 mRNA sequence. [JV058150] GTCCACCTTATGTTGCACACATATAACATTGTGTAAATTGCATACTATGGTTTGACTTGC
A_01_P000030 A_01_P000030 FALSE JV612544 Mmu.22685 gb|JV612544|gb|JU484147|gb|JV679776|gb|JV577852 chr2:69798842-69798901 TSA: Macaca mulatta Mamu_194403 mRNA sequence. [JV612544] TGGAAAAGACTTAGACCTTGACCTGGGTTCTGGGTATATTTGCACTTTTGAGACTGGTAG
A_01_P000031 A_01_P000031 FALSE 696683 ORC5 origin recognition complex, subunit 5 ENSMMUT00000016896 ens|ENSMMUT00000016896 chr3:141548760-141548701 origin recognition complex subunit 5 [Source:RefSeq peptide;Acc:NP_001248017] [ENSMMUT00000016896] ATTATATCATGAAAATCAAGCAGTTTCTATTGCTTTAAATGCTTTTATTAAAGCAATCTA
A_01_P000036 A_01_P000036 FALSE JV457416 693763 APOOL apolipoprotein O-like Mmu.21167 ENSMMUT00000047910 ens|ENSMMUT00000047910|ens|ENSMMUT00000047909|gb|JV457416|gb|JV571748 chrX:83892488-83892547 apolipoprotein O-like [Source:HGNC Symbol;Acc:24009] [ENSMMUT00000047910] AAGCTGAAGTAGACTGCATACAGAGACTACATAGAAAACTACAAGATGTGTGACGTTGCA

Total number of rows: 43603

Table truncated, full table size 12459 Kbytes.




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