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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Mar 03, 2015 |
| Title |
Agilent-046808 Mm CGH TL-Focus 2013 BLYTH [Probe Name Version] |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Mus musculus |
| Manufacturer |
Agilent Technologies |
| Manufacture protocol |
see manufacturer's web site at http://www.agilent.com/
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| Description |
Genomic tiling plus high density coverage of key TL loci.
Arrays of this design have barcodes that begin with 16046808 or 2546808.
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| Submission date |
Feb 10, 2015 |
| Last update date |
Feb 10, 2015 |
| Contact name |
Benjamin John Blyth |
| E-mail(s) |
benjamin.blyth@gmail.com
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| Organization name |
National Institute of Radiological Sciences
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| Department |
Centre for Radiation Protection
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| Lab |
Radiation for Children's Health Program
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| Street address |
4-9-1 Anagawa
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| City |
Inage-ku |
| State/province |
Chiba |
| ZIP/Postal code |
2638555 |
| Country |
Japan |
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| Samples (91)
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GSM1607121, GSM1607122, GSM1607123, GSM1607124, GSM1607125, GSM1607126
GSM1607127, GSM1607128, GSM1607129, GSM1607130, GSM1607131, GSM1607132, GSM1607133, GSM1607134, GSM1607135, GSM1607136, GSM1607137, GSM1607138, GSM1607139, GSM1607140, GSM1607141, GSM1607142, GSM1607143, GSM1607144, GSM1607145, GSM1607146, GSM1607147, GSM1607148, GSM1607149, GSM1607150, GSM1607151, GSM1607152, GSM1625673, GSM1625674, GSM5480310, GSM5480312, GSM5480314, GSM5480316, GSM5480318, GSM5480320, GSM5480321, GSM5480323, GSM5480325, GSM5480327, GSM5480328, GSM5480330, GSM5480332, GSM5480334, GSM5480336, GSM5480338, GSM5480340, GSM5480341, GSM5480343, GSM5480345, GSM5480347, GSM5480349, GSM5480351, GSM5480353, GSM5480354, GSM5480356, GSM5480358, GSM5480360, GSM5480362, GSM5480364, GSM5480366, GSM5480368, GSM5480369, GSM5480371, GSM5480373, GSM5480375, GSM5480377, GSM5480379, GSM5480381, GSM5480383, GSM5480384, GSM5480386, GSM5480388, GSM5480390, GSM5480392, GSM5480393, GSM5480395, GSM5480397, GSM5747346, GSM5747347, GSM5747348, GSM5747349, GSM5747350, GSM5747351, GSM5747352, GSM5747353, GSM5747354
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| Series (4)
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| GSE61315 |
Radiation-Induced T Cell Lymphoma: Carbon ion- vs. Gamma Ray-Induced |
| GSE63349 |
Mouse T-cell lymphomas induced by irradiation at different ages |
| GSE180952 |
Mouse thymic lymphomas arising after irradiation between with or without calorie restriction |
| GSE192455 |
Genomic DNA copy number alterations of mouse B-cell lymphomas induced by ionizing radiation |
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| Relations |
| Alternative to |
GPL19183 (Feature Number Version) |
| Data table header descriptions |
| ID |
Probe name |
| SEQUENCE |
Probe Sequence |
| CONTROL_TYPE |
Control type |
| GB_ACC |
GenBank accession number |
| GENE_SYMBOL |
Gene Symbol |
| GENE_NAME |
Gene Name |
| ACCESSION_STRING |
Accession String |
| CHROMOSOMAL_LOCATION |
Chromosomal Location |
| CYTOBAND |
Cytoband |
| DESCRIPTION |
Description |
| SPOT_ID |
|
| Data table |
| ID |
SEQUENCE |
CONTROL_TYPE |
GB_ACC |
GENE_SYMBOL |
GENE_NAME |
ACCESSION_STRING |
CHROMOSOMAL_LOCATION |
CYTOBAND |
DESCRIPTION |
SPOT_ID |
| MmCGHBrightCorner |
|
pos |
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MmCGHBrightCorner |
| DarkCorner |
|
pos |
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DarkCorner |
| A_67_P08791524 |
AAGAGATATTTTTGTTGCACCTAACTACCACAAAGATTAAAATAACACAAGTGACCCCCC |
FALSE |
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chr17:47241388-47241447 |
mm|qC |
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| A_67_P07801129 |
ATGTTGTCATCATTAAGATCACTCCTCAAAAACAGGAAAATTGAGCATGGTCATTCAGTT |
FALSE |
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chr13:19247084-19247143 |
mm|qA2 |
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| A_67_P07255811 |
ATCTATTTCCCCTTGTGCAAGATTCAGAACTGCCTGCTCCAAAGAAACAATAAAAG |
FALSE |
NM_001025597 |
Ikzf1 |
IKAROS family zinc finger 1 |
ref|NM_001025597|ref|NM_009578 |
chr11:11596502-11596557 |
mm|qA1 |
Mus musculus IKAROS family zinc finger 1 (Ikzf1), transcript variant 1, mRNA. |
|
| A_67_P19386602 |
TTGATACTCTGTCTTTTAAACAAACAATAGTCCTGTGTTTTCCCCTATGCTCTAAGACCT |
FALSE |
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chr15:9460083-9460142 |
mm|qA1 |
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| A_67_P06865259 |
AAGTCATTCACAATGCTACGATTTTCATCTCCTTCAGTAACATCGATCAGTTCATGCCTA |
FALSE |
NM_199195 |
Bckdhb |
branched chain ketoacid dehydrogenase E1, beta polypeptide |
ref|NM_199195 |
chr9:83863990-83864049 |
mm|qE2 |
Mus musculus branched chain ketoacid dehydrogenase E1, beta polypeptide (Bckdhb), nuclear gene encoding mitochondrial protein, mRNA. |
|
| A_67_P07187494 |
GCACTCCTTGAAATACTAGCATGTTCAGTCTCATTTTCAATACCCATAGACCTATGATGA |
FALSE |
NM_009306 |
Syt1 |
synaptotagmin I |
ref|NM_009306 |
chr10:108371063-108371122 |
mm|qD1 |
Mus musculus synaptotagmin I (Syt1), mRNA. |
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| A_67_P00989036 |
GGGTGTGCTTAGTAAATGTAGTTAATTGTTATTACAGCACTTAACAGTTTCTAAGGAGGG |
FALSE |
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ens|ENSMUST00000143967 |
chr4:130538277-130538336 |
mm|qD2.3 |
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| A_67_P21325722 |
CTGGTTCCTAGGATCTAAACCCAAGAATTATAGTTTCAATTTTGCTGAAGCCACAGTCT |
FALSE |
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chr19:32908711-32908769 |
mm|qC1 |
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| A_67_P04000058 |
TCAATTTTGTTCGCTGTTCTCTAGAAAAAAGACATATTTGCCCTCAATCCATATTTTGCT |
FALSE |
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chr1:3053985-3054044 |
mm|qA1 |
|
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| A_67_P18148313 |
GTGCCACATAGGTGACCACGTGGTTTCATCCACCAAGTGTTAACT |
FALSE |
NM_001079883 |
Bcl11b |
B-cell leukemia/lymphoma 11B |
ref|NM_001079883|ref|NM_021399 |
chr12:109163014-109163058 |
mm|qF1 |
Mus musculus B-cell leukemia/lymphoma 11B (Bcl11b), transcript variant 1, mRNA. |
|
| A_67_P12630466 |
GAAGGACTCCAGAACTTCCTGGTTCATCTCAAATGGGTGAACACC |
FALSE |
NM_008782 |
Pax5 |
paired box gene 5 |
ref|NM_008782 |
chr4:44648089-44648133 |
mm|qB1 |
Mus musculus paired box gene 5 (Pax5), mRNA. |
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| A_67_P06415676 |
AAAAAGTCACTGCTCGTAGAACTGTATTGTGTTTTAGCAAAGGATCATACTCGCAAGATT |
FALSE |
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chr8:7911348-7911407 |
mm|qA1.1 |
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| A_67_P02601740 |
GTATAGCCAAGGCAATGAAATAGTATCCAATTGTCCATGTGTTTAGAGTCACAGCCATAG |
FALSE |
NM_001079883 |
Bcl11b |
B-cell leukemia/lymphoma 11B |
ref|NM_001079883|ref|NM_021399 |
chr12:109178033-109178092 |
mm|qF1 |
Mus musculus B-cell leukemia/lymphoma 11B (Bcl11b), transcript variant 1, mRNA. |
|
| A_67_P09151654 |
TGGAAGTCTTTACAATATACCATACCCTACCGATAATTGACAAATCAGAACCAAGAGGAT |
FALSE |
NM_001013833 |
Prkg1 |
protein kinase, cGMP-dependent, type I |
ref|NM_001013833|ref|NM_011160 |
chr19:31556983-31557042 |
mm|qC1 |
Mus musculus protein kinase, cGMP-dependent, type I (Prkg1), transcript variant 1, mRNA. |
|
| A_67_P00845317 |
AAAAGGCATTTGTAAGGACATGGTGTAAGTGGTTCAAAATGGTAAACCATTGGACAATAA |
FALSE |
NM_001034867 |
Pm20d2 |
peptidase M20 domain containing 2 |
ref|NM_001034867 |
chr4:33258822-33258881 |
mm|qA5 |
Mus musculus peptidase M20 domain containing 2 (Pm20d2), mRNA. |
|
| A_67_P09405910 |
GGATGAAAGGGTTTTAACAGAACAATCAGCATTACTCAGACTTAATTCCAAGCAAGGTAA |
FALSE |
NM_001081385 |
Pcdh11x |
protocadherin 11 X-linked |
ref|NM_001081385 |
chrX:117823022-117823081 |
mm|qE2 |
Mus musculus protocadherin 11 X-linked (Pcdh11x), mRNA. |
|
| A_67_P05385659 |
AAAGATTACACATAAAATATTTGACGAATACATCTGAGTTTCCGCAATAAGTCTCTCAAA |
FALSE |
NM_017475 |
Rragc |
Ras-related GTP binding C |
ref|NM_017475 |
chr4:123603885-123603944 |
mm|qD2.2 |
Mus musculus Ras-related GTP binding C (Rragc), mRNA. |
|
| A_67_P02849621 |
ATTGAGACAATTGAGGTAGAAACCAAGTTCCATATACGATATTCTTTTACACACCACACC |
FALSE |
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chr14:51784837-51784896 |
mm|qC1 |
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Total number of rows: 55316
Table truncated, full table size 10124 Kbytes.
| Supplementary data files not provided |
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