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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 07, 2023 |
| Title |
Mouse immuno-oncology-related proteins for digital spatial profiling |
| Technology type |
other |
| Distribution |
custom-commercial |
| Organism |
Mus musculus |
| Manufacturer |
NanoString |
| Manufacture protocol |
see manufacturer's website
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| Submission date |
Nov 30, 2022 |
| Last update date |
Jun 07, 2023 |
| Contact name |
Naoto Kubota |
| E-mail(s) |
naoto.kubota@utsouthwestern.edu
|
| Organization name |
UT Southwestern Medical Center
|
| Lab |
Hoshida Lab
|
| Street address |
4600 Harry Hines Blvd ​South Campus, Rm J5.104
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| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75390 |
| Country |
USA |
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| Samples (46)
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GSM6771661, GSM6771662, GSM6771663, GSM6771664, GSM6771665, GSM6771666
GSM6771667, GSM6771668, GSM6771669, GSM6771671, GSM6771672, GSM6771673, GSM6771674, GSM6771675, GSM6771676, GSM6771677, GSM6771678, GSM6771679, GSM6771680, GSM6771681, GSM6771682, GSM6771683, GSM6771684, GSM6771685, GSM6771686, GSM6771687, GSM6771688, GSM6771690, GSM6771691, GSM6771692, GSM6771693, GSM6771694, GSM6771695, GSM6771696, GSM6771697, GSM6771698, GSM6771699, GSM6771700, GSM6771701, GSM6771702, GSM6771703, GSM6771705, GSM6771706, GSM6771707, GSM6771708, GSM6771709
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| Series (1) |
| GSE219108 |
Digital Spatial Profiling of immuno-oncology proteins in mouse hepatocellular carcinoma xenograft treated with THIO-based combination immune therapie |
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| Data table header descriptions |
| ID |
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| SPOT_ID |
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| Accession |
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| Category |
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| Probe type |
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| Gene symbol |
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| GeoMx panel |
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| Data table |
| ID |
SPOT_ID |
Accession |
Category |
Probe type |
Gene symbol |
GeoMx panel |
| CD86 |
CD86 antigen |
"P42082,Q549Q9,Q61238" |
Immune checkpoint |
immuno-oncology-related protein |
Cd86 |
Immune Activation Status |
| CD40L |
CD40 ligand |
"P27548,Q0VEI3" |
"T cell, marker" |
immuno-oncology-related protein |
Cd40lg |
Immune Activation Status |
| CD127/IL7RA |
interleukin 7 receptor |
"P16872,Q5FW78,Q8C9W4" |
"T cell, marker" |
immuno-oncology-related protein |
Il7r |
Immune Activation Status |
| CD27 |
CD antigen 27 |
"P41272,Q3U4X0,B7ZW87,D3Z7W5" |
"T cell, status/function" |
immuno-oncology-related protein |
Cd27 |
Immune Activation Status |
| CD44 |
CD44 antigen |
"Q80X37,P15379,Q3U8S1,A2APM1,A2APM4,A2APM3,A2APM2" |
"T cell, status/function" |
immuno-oncology-related protein |
Cd44 |
Immune Activation Status |
| ICOS |
inducible T-cell co-stimulator |
"Q3V3X2,Q5SUZ7,Q9WVS0" |
"T cell, status/function" |
immuno-oncology-related protein |
Icos |
Immune Activation Status |
| CD40 |
CD40 antigen |
P27512 |
"B cell, marker" |
immuno-oncology-related protein |
Cd40 |
Immune Activation Status |
| CD28 |
CD28 antigen |
"P31041,Q8CDB3" |
Immune checkpoint |
immuno-oncology-related protein |
Cd28 |
Immune Cell Typing |
| FOXP3 |
forkhead box P3 |
"Q53Z59,Q99JB6" |
"T cell, marker" |
immuno-oncology-related protein |
Foxp3 |
Immune Cell Typing |
| CD14 |
CD14 antigen |
"P10810,Q3UB18,Q3UE54,Q4FJP7" |
"Myeloid cell, marker" |
immuno-oncology-related protein |
Cd14 |
Immune Cell Typing |
| CD163 |
CD163 antigen |
"B7ZMW6,Q2VLH6" |
"Myeloid cell, marker" |
immuno-oncology-related protein |
Cd163 |
Immune Cell Typing |
| BatF3 |
"basic leucine zipper transcription factor, ATF-like 3 " |
Q9D275 |
"Myeloid cell, marker" |
immuno-oncology-related protein |
Batf3 |
Immune Cell Typing |
| Ly6G/Ly6C |
"lymphocyte antigen 6 complex, locus G ,lymphocyte antigen 6 complex, locus C1 " |
"A0A087WQF5,P0CW02,A0A087WNZ5,A0A087WRG9" |
"Myeloid cell, marker" |
immuno-oncology-related protein |
"Ly6g,Ly6c1" |
Immune Cell Typing |
| CD31 |
platelet/endothelial cell adhesion molecule 1 |
"Q08481,Q8CAW4" |
"Endothelial, marker" |
immuno-oncology-related protein |
Pecam1 |
Immune Cell Typing |
| CD34 |
CD34 antigen |
"Q543Y2,Q543B6,Q64314" |
"Endothelial, marker" |
immuno-oncology-related protein |
Cd34 |
Immune Cell Typing |
| B7-H3 |
CD276 antigen |
"A6MDC5,Q8VE98" |
Immune checkpoint |
immuno-oncology-related protein |
Cd276 |
IO Drug Target |
| VISTA |
RIKEN cDNA 4632428N05 gene |
"Q9D659,A0A171EBK7" |
Immune checkpoint |
immuno-oncology-related protein |
Vsir |
IO Drug Target |
| Tim-3 |
hepatitis A virus cellular receptor 2 |
Q8VIM0 |
Immune checkpoint |
immuno-oncology-related protein |
Havcr2 |
IO Drug Target |
| LAG3 |
lymphocyte-activation gene 3 |
Q61790 |
Immune checkpoint |
immuno-oncology-related protein |
Lag3 |
IO Drug Target |
| GITR |
"tumor necrosis factor receptor superfamily, member 18 " |
"O35714,Q540M6" |
"T cell, status/function" |
immuno-oncology-related protein |
Tnfrsf18 |
IO Drug Target |
Total number of rows: 38
Table truncated, full table size 4 Kbytes.
| Supplementary data files not provided |
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