GEO help: Mouse over screen elements for information.
Status
Public on Feb 13, 2007
Title
WCFS Lactobacillus plantarum 11K 60-mer array, Version 1, our ID LPAG1
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Lactiplantibacillus plantarum WCFS1 Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Support
glass
Coating
unknown
Description
This array contains 60-mer probes that are designed for L. plantarum strain WCFS1. The sequence of this organism is present in public databases, Acc. Nr. AL935263.
Contributor(s)
Molenaar D Submission date
Sep 14, 2006
Last update date
Feb 13, 2007
Contact name
Douwe Molenaar
E-mail(s)
douwe.molenaar@falw.vu.nl Organization name
Vrije Universiteit Amsterdam
Department
Systems Bioinformatics
Street address
De Boelelaan 1085
City
Amsterdam
ZIP/Postal code
1081 HV
Country
Netherlands
Samples (130)
GSM136883 , GSM136884 , GSM136885 , GSM136886 , GSM136887 , GSM136888
GSM206844 ,
GSM206845 ,
GSM206846 ,
GSM206847 ,
GSM206848 ,
GSM206849 ,
GSM206850 ,
GSM206851 ,
GSM206852 ,
GSM215123 ,
GSM215124 ,
GSM215125 ,
GSM215126 ,
GSM215127 ,
GSM215128 ,
GSM217127 ,
GSM217128 ,
GSM217129 ,
GSM217130 ,
GSM217131 ,
GSM217132 ,
GSM217146 ,
GSM217147 ,
GSM217148 ,
GSM217149 ,
GSM226923 ,
GSM226924 ,
GSM226925 ,
GSM226926 ,
GSM226927 ,
GSM226928 ,
GSM226929 ,
GSM226930 ,
GSM226931 ,
GSM226932 ,
GSM226933 ,
GSM226934 ,
GSM226935 ,
GSM226936 ,
GSM226937 ,
GSM226938 ,
GSM226939 ,
GSM226940 ,
GSM226941 ,
GSM226942 ,
GSM226943 ,
GSM239110 ,
GSM239111 ,
GSM239112 ,
GSM239113 ,
GSM239114 ,
GSM239115 ,
GSM239116 ,
GSM239117 ,
GSM239118 ,
GSM239119 ,
GSM239120 ,
GSM239121 ,
GSM287541 ,
GSM287542 ,
GSM287543 ,
GSM287544 ,
GSM287545 ,
GSM287546 ,
GSM287547 ,
GSM287548 ,
GSM287549 ,
GSM287550 ,
GSM287552 ,
GSM287553 ,
GSM287554 ,
GSM287555 ,
GSM287556 ,
GSM287557 ,
GSM287558 ,
GSM287559 ,
GSM445770 ,
GSM445771 ,
GSM445772 ,
GSM445773 ,
GSM445774 ,
GSM445775 ,
GSM445776 ,
GSM445777 ,
GSM445778 ,
GSM445779 ,
GSM445780 ,
GSM445781 ,
GSM458130 ,
GSM458131 ,
GSM458132 ,
GSM458133 ,
GSM458134 ,
GSM458135 ,
GSM459411 ,
GSM459412 ,
GSM459413 ,
GSM459414 ,
GSM459415 ,
GSM459416 ,
GSM459417 ,
GSM459418 ,
GSM459419 ,
GSM459420 ,
GSM459421 ,
GSM459422 ,
GSM459519 ,
GSM459520 ,
GSM459521 ,
GSM459522 ,
GSM459523 ,
GSM459524 ,
GSM459525 ,
GSM459526 ,
GSM459527 ,
GSM459528 ,
GSM459529 ,
GSM459530 ,
GSM459531 ,
GSM459532 ,
GSM459533 ,
GSM459534 ,
GSM1064788 ,
GSM1064789 Series (12)
GSE5882 Identification of prebiotic fructooligosaccharide metabolism in Lactobacillus plantarum WCFS1 through microarrays
GSE8348 trxB1 overexpression response to hydrogen peroxide stress in Lactobacillus plantarum WCFS1
GSE8672 Wt-ko_trxB1_Filtered bkg correc transf-norm
GSE8743 AER-ANA_Filtered bkgr.correction transf-norm
GSE8744 Heme_k2_Filtered bckg correct trans-norm
GSE8956 Batch wt vs hyper +_- pABA Normal int_Filtered fg-bg2
GSE9392 Control vs hyper; 25 mM glucose_Filtered fb-bg
GSE11383 Lifestyle of lactobacillus plantarum in the mouse cecum
GSE17847 Ethanol stress response in Lactobacillus plantarum WCFS1
GSE18354 Lactate Stress in L. plantarum WCFS1
GSE18435 Analysis of the role of CggR in Lactobacillus plantarum NC8 and WCFS1 by transcriptome analysis
GSE43518 Identification of genes regulated by L-lactate and by DL-lactate in Lactobacillus plantarum
Data table header descriptions ID Unique spot identifier
ROW Row within array
COLUMN Column within array
OLIGO_ID Oligonucleotide identifier
SEQUENCE Sequence of oligonucleotide probe
ORF Locus tag from accession number AL935254
SPOT_ID
Data table ID ROW COLUMN OLIGO_ID SEQUENCE ORF SPOT_ID 1
1
1
Pro25G_T10_Pro25G
-- Pro25G_T10_-- Pro25G
2
1
2
Pro25G_T10_Pro25G
-- Pro25G_T10_-- Pro25G
3
1
3
(-)3xSLv1
-- (-)3xSLv1
4
1
4
AG1lp_0845#1
GCATTGCCACGACTGATGAAGTGACACTCAATGATATTGCAATTCAGCGACAAGTAACGC
lp_0845 5
1
5
AG1lp_1803#1
CGCATCTGTTAGTGACCCAACGTCGTTTACGGCTTTTAATGATCTTTGACGCGCTCTTTT
lp_1803 6
1
6
AG1lp_1726#3
GAGGGGACTTATGATGGTCAGTCGGTAACTATTGGTGAGTTGAATTTACCTTCAGACATC
lp_1726 7
1
7
AG1lp_2696#2
CGGTCGTCATTGTTTTAGTCGGACTGATGGCCGGTAGTTTAATGATTGACCAATTTGGCT
lp_2696 8
1
8
AG1lp_3193#2
ATGAAGTATCGGTTAATAGGGGTAGGTGCGAGTCTAGTCGTCGCAGTCATGTTAACAGGG
lp_3193 9
1
9
AG1lp_2772#2
CGCGAACAAGCGTATTTGATTACGGTGATGACCAAAATATTGACCCCGGGTGAACATGAT
lp_2772 10
1
10
AG1lp_1818#3
CCGTACTTAAAACTGTCAGCGATGACGCTACCATCCAACGTGCATATCTTCCAAGATGCT
lp_1818 11
1
11
AG1lp_0104#2
ACAAGCGCACAATTACGGCTCAGATTGATGATGAAAATTACGCCGGTAAGTTAGTGTCGC
lp_0104 12
1
12
AG1lp_2393#2
GGGTGCGCTAACGTTATTACTAGCGGGCTGTGGTAAGACAACCTTATCAACGACTAAAAC
lp_2393 13
1
13
AG1lp_0150#2
ACTTGGATCGCCGATTCCATCTCAGTTGCCATCATTGGGACCATCCTACTAGTCTTATAC
lp_0150 14
1
14
Blank
-- Blank
15
1
15
AG1lp_0217#2
CTGGTCGCCACAGCTCTACTTTAAAGCAATTTTGGTCTCTATCAATTGGTCGCAGAACCT
lp_0217 16
1
16
AG1lp_2578#2
TAAACCGGGACAATCTGGATTAGGTCAACCGGCATTACCAGGACTGATCAAGCAACCAAG
lp_2578 17
1
17
AG1lp_3471#3
AATCCACCAAGGGATGTTACAAAATTTTAAACGTGAAGAACGTGGGATGGGTTGGCCTGC
lp_3471 18
1
18
AG1lp_1986#1
TGCAAGTTTCCTTGGTTAACGATGGGCCGGTCACGATTTGTTATGATACTGATCAACGTT
lp_1986 19
1
19
AG1lp_2882#1
ACCGGGTTTGTAATTGTTTCACCAATTACGTCTACAATGCGTGATTTGCCCGGCTACTTT
lp_2882 20
1
20
Pro25G_EQCP1_T5
-- Pro25G_-- EQCP1_T5
10807 920 Kbytes .Supplementary data files not provided
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