|
| Status |
Public on Aug 20, 2003 |
| Title |
Arabidopsis Whole Genome Tiling Array 1-rc-1 |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Arabidopsis thaliana |
| |
|
| Description |
This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was used to make these chips and the position coordinates in the table refer to this version of the sequence. Six chips were required to tile one strand of the genome. This chip tiles the opposite strand of the sequence of Chromosome 1 (GenBank accession # NC_003070.2 GI:18426880) from base 1 to base 19,658,475.
Position coordinates in table refer to the accession(s) listed above and are the same for each pair of forward (chip WGA 1-1) and opposite strand oligos (this chip WGA 1-rc-1), so the position listed in the table is the position of base 25 (5-prime to three-prime) of the opposite strand oligo.
Features that have no sequence information represent positioning grids/checkerboards or random sequence controls.
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| |
|
| Contributor(s) |
Palm CJ, Theologis A, Ecker J, Davis R |
| Submission date |
Aug 20, 2003 |
| Last update date |
Dec 11, 2007 |
| Contact name |
Curtis J Palm |
| E-mail(s) |
curtis@sequence.stanford.edu
|
| Phone |
650-812-1994
|
| Fax |
650-812-1975
|
| Organization name |
Stanford Genome Technology Center
|
| Department |
|
| Lab |
R. W. Davis
|
| Street address |
855 California Ave
|
| City |
Palo Alto |
| State/province |
CA |
| ZIP/Postal code |
94304 |
| Country |
USA |
| |
|
| Samples (4) |
GSM8960, GSM8961, GSM8962, GSM9213 |
| Series (6)
|
| GSE601 |
Identification of new and unpredicted full length Arabidopsis genes |
| GSE605 |
Identification of new full length Arabidopsis genes - whole genome arrays |
| GSE636 |
Expression of Annotated Genes |
| GSE637 |
Antisense Expression of Annotated Genes |
| GSE638 |
Expression of Intergenic Clusters |
| GSE639 |
Expression in Intergenic Regions |
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