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Status
Public on Jul 27, 2007
Title
Ciona intestinalis 44k Oligoarray ver.2
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Ciona intestinalis Manufacturer
Agilent
Manufacture protocol
The microarray was manufactured by Agilent Technologies. The details can be found in their web sitehttp://www.chem.agilent.com/Scripts/PCol.asp?lPage=494
Contributor(s)
Satou Y , Satoh N Submission date
Jul 16, 2007
Last update date
Mar 25, 2013
Contact name
Nori Satoh
E-mail(s)
satoh@ascidian.zool.kyoto-u.ac.jp Phone
+81-75-753-4102
Fax
+81-75-705-1113
URL
http://hoya.zool.kyoto-u.ac.jp/welcom.html Organization name
Kyoto University
Department
Department of Zoology
Lab
Developmental Biology and Genome Biology
Street address
Sakyo-ku
City
Kyoto
ZIP/Postal code
606-8502
Country
Japan
Samples (63)
GSM219162 , GSM219163 , GSM389857 , GSM389858 , GSM458165 , GSM458166
GSM458167 ,
GSM458174 ,
GSM613042 ,
GSM613043 ,
GSM613044 ,
GSM613045 ,
GSM613046 ,
GSM613047 ,
GSM613048 ,
GSM613049 ,
GSM613050 ,
GSM613051 ,
GSM613052 ,
GSM613053 ,
GSM613054 ,
GSM613055 ,
GSM613056 ,
GSM613057 ,
GSM613058 ,
GSM613059 ,
GSM613060 ,
GSM613061 ,
GSM613062 ,
GSM613063 ,
GSM613064 ,
GSM613065 ,
GSM613066 ,
GSM613067 ,
GSM613068 ,
GSM613069 ,
GSM613070 ,
GSM613071 ,
GSM613072 ,
GSM613073 ,
GSM613074 ,
GSM634303 ,
GSM634304 ,
GSM634305 ,
GSM634306 ,
GSM1105157 ,
GSM1105158 ,
GSM1432693 ,
GSM1432694 ,
GSM1432695 ,
GSM1432696 ,
GSM1432697 ,
GSM1432698 ,
GSM1432699 ,
GSM1432700 ,
GSM3539135 ,
GSM3539136 ,
GSM3539137 ,
GSM3539138 ,
GSM3539139 ,
GSM3539140 ,
GSM3539141 ,
GSM3539142 Series (8)
GSE8821 Comparative analysis of gene expression profiles between the ovary treated with or without Ci-TK
GSE15586 Comparative analysis of gene expression profiles between whole oocytes and isolated cortices
GSE18364 Transcriptome Analysis of Ciona intestinalis to Identify Genes Preferentially Expressed in the Larval Brain
GSE24941 Transcriptome analysis of Ciona intestinalis to identify genes expressed in the adult organs.
GSE25817 Comparisons of transcriptome of Ciona intestinalis between eggs and 32-cell stage embryos to identify rapidly degrading maternal mRNA
GSE45475 The formation of the intestine at the juvenile stage is raised by the Hox10 gene through the migration of endodermal strand cells in ascidian
GSE59280 Microarray Analysis Reveals a Role of the Notch System in Ciona Siphon Regeneration
GSE124672 Identification of differentially expressed genes in the mutant tail regression failed (trf) in Ciona intestinalis.
Data table header descriptions ID Feature Number. Using this number, you can search the corresponding gene (gene model, cDNA and ESTs) on the Ciona genome by Ghost Database. (http://hoya.zool.kyoto-u.ac.jp/SearchGenome.html)
Row Feature location:row
Col Feature location:column
SEQUENCE Sequence of oligonucleotide probe
ControlType Feature control type, 0:Control type none, 1:Positive control, -1:Negative control
GeneName An identifier for the gene for which the probe provides expression information
SPOT_ID spot identifier
Data table ID Row Col SEQUENCE ControlType GeneName SPOT_ID 1
1
1
ATCATCGTAGCTGGTCAGTGTATCCTTTTTTTTTTATCATCGTAGCTGGTCAGTGTATCC
1
BrightCorner
--Positive control_BrightCorner
2
1
3
GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG
-1
3xSLv1
--Negative control_3xSLv1
3
1
5
AAACACCCGTTCAACCTCTTATCCCACCTAATGATAAACCAAGGCCAGAAATGGTAAGCG
0
CIYS1
Ciona probe_CIYS1
4
1
7
TCACCGGAGGTCACACAGAGGAACTTCACCCCATGGTAAGGGTTTGTTACTTATAGTTAT
0
CIYS10
Ciona probe_CIYS10
5
1
9
AAACGAATCGTTGTGAATGTAAACACAGGTTTGAAAAAGCGCGGAAAAGTGAATTATTTC
0
CIYS100
Ciona probe_CIYS100
6
1
11
GGCATTCGAATCGTTTTTCGTGGGAGAAAATCAGTCGAACTGTGTCCTATAAGCATTACA
0
CIYS1000
Ciona probe_CIYS1000
7
1
13
ATCATCGTAGCTGGTCAGTGTATCCGGTCAGTGTATCCAGTTTCTCCGAATTTTT
1
QC_Fusion
--Positive control_QC_Fusion
8
1
15
CTGGCGATGGCATTTCAGAACCTAGGTTCGACATAACAAAACCACAACACTCACTTTTAG
0
CIYS10000
Ciona probe_CIYS10000
9
1
17
CTGTATGTTTGGTCGGACTTCTTCGCCTCCACTTTGAAGTTTTGTATTGGAGAGCCATTT
0
CIYS10001
Ciona probe_CIYS10001
10
1
19
AGTTGCATTTGTTCATGAGGTTCATCAGAACAAGGATTTTGTTCACGGTAGTTTCAGTGG
0
CIYS10002
Ciona probe_CIYS10002
11
1
21
CGGAACCACCTGGAGCTCGATCTAGTCCCTAAAGGGGGGGAGCAGGGATTTGCTAAGCTT
1
r60_a20
--Positive control_r60_a20
12
1
23
AAACAGCAAAACGGAAAAATTCGTTTTTTAAATGAAATTCCGTTCCTGGCAATTCAGAGG
0
CIYS10003
Ciona probe_CIYS10003
13
1
25
TAGCGGGCTTAACAATACAAAAGGGTACGAGGAGAACACAAACGACAGCATATGCACTCA
0
CIYS10004
Ciona probe_CIYS10004
14
1
27
ATCATCGTAGCTGGTCAGTGTATCCGGTCAGTGTATCCAGTTTCTCCGAATTTTT
1
QC_Fusion
--Positive control_QC_Fusion
15
1
29
GTGGACCAAACTTAATGTACGACCAAACTTTCATAAAACAGTTTATTAAAAAGGCCGTGC
0
CIYS10005
Ciona probe_CIYS10005
16
1
31
ACTCGCCAAACAGTCGATGATTATCGTCACGACAATCGTCGTCGTCGCAACTTTATTGTT
0
CIYS10006
Ciona probe_CIYS10006
17
1
33
TCGCTTGGTGGTTAAAGTCATATATGTTGTTAAGAATTTGCTTTCTGAAAGCTGCTAACT
0
CIYS10007
Ciona probe_CIYS10007
18
1
35
TTTACCTAGGCTATTCTTTCCTATCAAACATACAGCTCCTGTTGTCCCATAGCCATTTAT
0
CIYS10008
Ciona probe_CIYS10008
19
1
37
ACGTCACTGTATTACGTCATAATGTTGGTTGGAATGACGGGAAGAACGGATGGTTGTACT
0
CIYS10009
Ciona probe_CIYS10009
20
1
39
AAATGATAGCTGGAAAGTGCCTGTGGGATAGTTTTTCATTGATGGTTTAAGTGGGACTGA
0
CIYS1001
Ciona probe_CIYS1001
44290 4626 Kbytes .Supplementary data files not provided
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