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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jan 15, 2009 |
| Title |
Illumina HumanRef-6 v2.0 expression beadchip |
| Technology type |
oligonucleotide beads |
| Distribution |
commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Illumina Inc. |
| Manufacture protocol |
see manufacturer's website
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| Contributor(s) |
Bremner R, Abou El Hassan M |
| Submission date |
Apr 28, 2008 |
| Last update date |
Jan 18, 2013 |
| Contact name |
GEO admin |
| E-mail(s) |
geo@ncbi.nlm.nih.gov
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| Organization name |
NCBI/NLM/NIH
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| Street address |
9000 Rockville Pike
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| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
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| Samples (205)
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GSM285054, GSM285055, GSM285056, GSM285062, GSM285063, GSM285064
GSM285357, GSM285358, GSM285359, GSM285360, GSM285361, GSM285362, GSM389435, GSM389436, GSM389437, GSM389438, GSM389439, GSM389440, GSM389441, GSM389442, GSM389443, GSM389444, GSM389445, GSM389446, GSM389447, GSM389448, GSM389449, GSM389450, GSM389451, GSM389452, GSM389453, GSM389454, GSM422074, GSM422075, GSM422076, GSM422077, GSM422078, GSM422079, GSM422080, GSM422081, GSM422082, GSM422083, GSM422084, GSM422085, GSM422086, GSM422087, GSM422088, GSM422089, GSM422090, GSM422091, GSM422092, GSM422093, GSM422094, GSM422095, GSM422096, GSM422097, GSM1054230, GSM1054231, GSM1054232, GSM1054233, GSM1054234, GSM1054235, GSM1054236, GSM1054237, GSM1054238, GSM1054239, GSM1054240, GSM1054241, GSM1054242, GSM1054243, GSM1054244, GSM1054245, GSM1054246, GSM1054247, GSM1054248, GSM1054249, GSM1054250, GSM1054251, GSM1054252, GSM1054253, GSM1054254, GSM1054255, GSM1054256, GSM1054257, GSM1054258, GSM1054259, GSM1054260, GSM1054261, GSM1054262, GSM1054263, GSM1054264, GSM1054265, GSM1054266, GSM1054267, GSM1054268, GSM1054269, GSM1054270, GSM1054271, GSM1054272, GSM1054273, GSM1054274, GSM1054275, GSM1054276, GSM1054277, GSM1054278, GSM1054279, GSM1054280, GSM1054281, GSM1054282, GSM1054283, GSM1054284, GSM1054285, GSM1054286, GSM1054287, GSM1054288, GSM1054289, GSM1054290, GSM1054291, GSM1054292, GSM1054293, GSM1054294, GSM1054295, GSM1054296, GSM1054297, GSM1054298, GSM1054299, GSM1054300, GSM1054301, GSM1054302, GSM1054303, GSM1054304, GSM1054305, GSM1054306, GSM1054307, GSM1054308, GSM1054309, GSM1054310, GSM1054311, GSM1054312, GSM1054313, GSM1054314, GSM1054315, GSM1054316, GSM1054317, GSM1054318, GSM1054319, GSM1054320, GSM1054321, GSM1054322, GSM1054323, GSM1054324, GSM1054325, GSM1054326, GSM1054327, GSM1054328, GSM1054329, GSM1054330, GSM1054331, GSM1054332, GSM1054333, GSM1054334, GSM1054335, GSM1054336, GSM1054337, GSM1054338, GSM1054339, GSM1054340, GSM1054341, GSM1054342, GSM1054343, GSM1054344, GSM1054345, GSM1054346, GSM4013273, GSM4013274, GSM4013275, GSM4013276, GSM4013277, GSM4013278, GSM4013279, GSM4013280, GSM4013281, GSM4013282, GSM4013283, GSM4013284, GSM4013285, GSM4013286, GSM4013287, GSM4013288, GSM8605021, GSM8605022, GSM8605023, GSM8605024, GSM8605025, GSM8605026, GSM8605027, GSM8605028, GSM8605029, GSM8605030, GSM8605031, GSM8605032, GSM8605033, GSM8605034, GSM8605035, GSM8605036
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| Series (6)
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| GSE11299 |
Hela cells treated with or without IFNgamma at different time points |
| GSE15550 |
Gene expression of pancreatic cancer cells |
| GSE16816 |
Combinatorial targeting of glycolysis and oxidative phosphorylation suppresses tumor growth and metastases. |
| GSE42977 |
Sequential Binary Gene-Ratio Tests Define a Novel Molecular Diagnostic Strategy for Malignant Pleural Mesothelioma |
| GSE135508 |
ALDH1A2 Is a Candidate Tumor Suppressor Gene in Ovarian Cancer” |
| GSE280729 |
Gene expression analysis conducted 3 or 4 days after 6 Gy IR exposure in H460 cells. |
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| Relations |
| Alternative to |
GPL6102 (official) |
| Data table header descriptions |
| ID |
|
| GB_ACC |
Accession Number |
| Symbol |
gene symbol |
| SEQUENCE |
Probe Sequence |
| Definition |
Gene description from the source |
| Ontology |
annotations from Gene Ontology project |
| Synonym |
Gene symbol synonyms from Refseq |
| Data table |
| ID |
GB_ACC |
Symbol |
SEQUENCE |
Definition |
Ontology |
Synonym |
| ILMN_89282 |
BU678343 |
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CTCTCTAAAGGGACAACAGAGTGGACAGTCAAGGAACTCCACATATTCAT |
UI-CF-EC0-abi-c-12-0-UI.s1 UI-CF-EC0 Homo sapiens cDNA clone UI-CF-EC0-abi-c-12-0-UI 3, mRNA sequence |
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| ILMN_35826 |
XM_497527.2 |
LOC441782 |
GGGGTCAAGCCCAGGTGAAATGTGGATTGGAAAAGTGCTTCCCTTGCCCC |
PREDICTED: Homo sapiens similar to spectrin domain with coiled-coils 1 (LOC441782), mRNA. |
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| ILMN_25544 |
NM_018433.3 |
JMJD1A |
CCAGGCTGTAAAAGCAAAACCTCGTATCAGCTCTGGAACAATACCTGCAG |
Homo sapiens jumonji domain containing 1A (JMJD1A), mRNA. |
|
TSGA; JMJD1; KIAA0742; DKFZp686A24246; DKFZp686P07111 |
| ILMN_132331 |
AW629334 |
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CCAGACAGGAAGCATCAAGCCCTTCAGGAAAGAATATGCGAGAGTGCTGC |
hi56g05.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone IMAGE:2976344 3, mRNA sequence |
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| ILMN_105017 |
AI818233 |
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TGTGCAGAAAGCTGATGGAAGGGAGAAAGAATGGAAGTGGGTCACACAGC |
wk77d04.x1 NCI_CGAP_Pan1 Homo sapiens cDNA clone IMAGE:2421415 3, mRNA sequence |
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| ILMN_75398 |
BQ185359 |
|
GCGCCTTCCGACAAGGAAAGTGTTTAGTGTCCATCGGTCTGGTGGGTGGC |
UI-E-EJ1-aju-p-07-0-UI.s1 UI-E-EJ1 Homo sapiens cDNA clone UI-E-EJ1-aju-p-07-0-UI 3, mRNA sequence |
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| ILMN_10519 |
NM_006534.2 |
NCOA3 |
CCACATGAAATGACTTATGGGGGATGGTGAGCTGTGACTGCTTTGCTGAC |
Homo sapiens nuclear receptor coactivator 3 (NCOA3), transcript variant 2, mRNA. |
positive regulation of transcription, DNA-dependent [goid 45893] [pmid 15572661] [evidence NAS]; androgen receptor signaling pathway [goid 30521] [pmid 15572661] [evidence NAS]; signal transduction [goid 7165] [evidence IEA]; thyroid hormone receptor binding [goid 46966] [pmid 9346901] [evidence NAS]; signal transducer activity [goid 4871] [evidence IEA]; transcription coactivator activity [goid 3713] [pmid 15572661] [evidence NAS]; protein binding [goid 5515] [pmid 11279242] [evidence IPI]; acyltransferase activity [goid 8415] [evidence IEA]; histone acetyltransferase activity [goid 4402] [pmid 9267036] [evidence TAS]; transferase activity [goid 16740] [evidence IEA]; androgen receptor binding [goid 50681] [pmid 15572661] [evidence NAS]; transcription regulator activity [goid 30528] [evidence IEA]; nucleus [goid 5634] [pmid 9267036] [evidence NAS] |
ACTR; AIB1; RAC3; SRC3; pCIP; CTG26; CAGH16; TNRC14; TNRC16; TRAM-1 |
| ILMN_117209 |
AI026841 |
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GGGTGGAGTGATTGCTACCTCCAGGCATGATCTTTGTCACCTGGCTGAGG |
ow02h05.x1 Soares_testis_NHT Homo sapiens cDNA clone IMAGE:1645689 3 similar to contains Alu repetitive element;, mRNA sequence |
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| ILMN_17234 |
NM_001013655.1 |
LOC389834 |
CCATTGGTTCTGTTTGGCATAACCCTATTAAATGGTGCGCAGAGCTGAAT |
Homo sapiens hypothetical gene supported by AK123403 (LOC389834), mRNA. |
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| ILMN_19244 |
NM_152460.2 |
C17orf77 |
GATACAATGGATTTTGGGGACTTAGGGGAAAGGATGCAGGGGATGAGGGA |
Homo sapiens chromosome 17 open reading frame 77 (C17orf77), mRNA. |
|
FLJ31882 |
| ILMN_1567 |
NM_018698.3 |
NXT2 |
ATGGCTGGAACTACTCGTATAAGGACTAGACTGTATTTTTGACATGCTCC |
Homo sapiens nuclear transport factor 2-like export factor 2 (NXT2), mRNA. |
mRNA processing [goid 6397] [evidence IEA]; mRNA-nucleus export [goid 6406] [evidence IEA]; transport [goid 6810] [evidence IEA]; protein transport [goid 15031] [evidence IEA]; transporter activity [goid 5215] [evidence IEA]; intracellular [goid 5622] [evidence IEA]; nucleus [goid 5634] [evidence IEA] |
P15-2 |
| ILMN_25274 |
NM_019024.1 |
KIAA1414 |
GGCTGCCAGACAACCAGCCCCCGCCATACATTCTGCACCAACAATTAAGC |
Homo sapiens KIAA1414 protein (KIAA1414), mRNA. |
mitotic chromosome condensation [goid 7076] [evidence IEA]; binding [goid 5488] [evidence IEA] |
|
| ILMN_2520 |
NM_152253.1 |
CHKB |
GTGGGAGGTCAGGGGTCAGCCTCTCCGGTGCGCGGATCGGGGTCAGGGGT |
Homo sapiens choline kinase beta (CHKB), transcript variant 2, mRNA. |
transferase activity [goid 16740] [evidence IEA]; ethanolamine kinase activity [goid 4305] [evidence IEA] |
CHKL; CHETK |
| ILMN_17249 |
NM_001951.2 |
E2F5 |
CTTCTGACGTGTTTCCTCTCTTAAGGCTTTCTCCTACCCCGGCAGATGAC |
Homo sapiens E2F transcription factor 5, p130-binding (E2F5), mRNA. |
regulation of transcription, DNA-dependent [goid 6355] [evidence IEA]; regulation of cell cycle [goid 74] [pmid 7892279] [evidence TAS]; transcription [goid 6350] [evidence IEA]; protein binding [goid 5515] [pmid 7760804] [evidence TAS]; transcription factor activity [goid 3700] [pmid 7892279] [evidence NAS]; transcription factor complex [goid 5667] [evidence IEA]; nucleus [goid 5634] [evidence IEA] |
E2F-5 |
| ILMN_132251 |
BI561255 |
|
CTGTTATCGGAGGGTCCGTGGCACTTCTCTTGCCTGGATCAAACGGTGAC |
603256406F1 NIH_MGC_97 Homo sapiens cDNA clone IMAGE:5298936 5, mRNA sequence |
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| ILMN_118745 |
AW028447 |
|
TTAAAGAACCAGGAAATGTAGAAAATTAGTTGCCTGTCCATAGGGATCTT |
wv89c11.x1 NCI_CGAP_Gas4 Homo sapiens cDNA clone IMAGE:2541332 3, mRNA sequence |
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| ILMN_118938 |
AA828831 |
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TGGTTATCAGGGGCTTGCAGTGTGAGGGATGTGGAAATTAGGTCAAAAGG |
od80c01.s1 NCI_CGAP_Ov2 Homo sapiens cDNA clone IMAGE:1374240, mRNA sequence |
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| ILMN_103363 |
CF123192 |
|
CATTGTGCAAAGTCATGCTGCTTCGAATTATGCTGCGCGCTGGCACACAG |
UI-HF-CH0.1-aue-b-02-0-UI.r1 NIH_MGC_211 Homo sapiens cDNA clone IMAGE:30573133 5, mRNA sequence |
|
|
| ILMN_2384 |
NM_005879.2 |
TRAIP |
TCGGGACCAGCCTGAGGTGTAAGGGCAGACAAACAGGTGAGGGTGAGTGT |
Homo sapiens TRAF interacting protein (TRAIP), mRNA. |
cell proliferation [goid 8283] [pmid 9104814] [evidence TAS]; induction of apoptosis [goid 6917] [pmid 9104814] [evidence TAS]; signal transduction [goid 7165] [pmid 9104814] [evidence TAS]; metal ion binding [goid 46872] [evidence IEA]; zinc ion binding [goid 8270] [evidence IEA]; protein binding [goid 5515] [evidence IEA] |
TRIP; RNF206 |
| ILMN_21047 |
NM_172313.1 |
CSF3R |
CCTTGGCACGCCACCCATCACCAAGCTCACAGTGCTGGAGGAGGATGAAA |
Homo sapiens colony stimulating factor 3 receptor (granulocyte) (CSF3R), transcript variant 4, mRNA. |
signal transduction [goid 7165] [pmid 1371413] [evidence NAS]; defense response [goid 6952] [pmid 7542747] [evidence TAS]; cell adhesion [goid 7155] [evidence IEA]; protein binding [goid 5515] [evidence IEA]; receptor activity [goid 4872] [pmid 7542747] [evidence TAS]; hematopoietin/interferon-class (D200-domain) cytokine receptor activity [goid 4896] [evidence IEA]; membrane [goid 16020] [evidence IEA]; integral to plasma membrane [goid 5887] [pmid 7542747] [evidence TAS] |
CD114; GCSFR |
Total number of rows: 46718
Table truncated, full table size 13263 Kbytes.
| Supplementary data files not provided |
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