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Platform GPL6802 Query DataSets for GPL6802
Status Public on Oct 04, 2008
Title Low Density Microvascular Differentiation Array (LD-MDA) version 1.0
Technology type RT-PCR
Distribution virtual
Organism Homo sapiens
Manufacturer Applied Biosystems
Manufacture protocol Applied Biosystems Primer Assay - gene selection based on LEC vs BEC differential expressions. The 384-well micro-fluidic cards were produced with pre-designed primer pairs and FAM-labeled TaqMan probes for each of the 96 selected genes in duplicate, with two sample reservoirs per card.
 
Description Microfluidic 384-well TaqMan™ real time RT-PCR platform
 
Submission date Apr 30, 2008
Last update date Oct 04, 2008
Contact name Jay Woo Shin
E-mail(s) jay.shin@gsc.riken.jp
Organization name ETH Zurich
Department Institute of Pharmaceutical Sciences
Lab Michael Detmar
Street address Wolfgang-Paulistrasse 10; HCI H394
City Zurich
State/province Zurich
ZIP/Postal code 8093
Country Switzerland
 
Samples (29) GSM285656, GSM285657, GSM285658, GSM285659, GSM285660, GSM285661 
Series (2)
GSE11306 Quantification of vascular lineage-specific differentiation (cell type comparison)
GSE11308 Quantification of vascular lineage-specific differentiation

Data table header descriptions
ID
Gene Symbol Gene symbol
Gene Name Gene name (Title)
Assay ID
TYPE Gene association (classification); L = lymphatic-specific, B = blood vessel-specific, EC= panendothelial, HK= housekeeping (endogenous)
GB_LIST RefSeq accession number
Public Genbank mRNA
SPOT_ID

Data table
ID Gene Symbol Gene Name Assay ID TYPE GB_LIST Public Genbank mRNA SPOT_ID
1 ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 Hs00199608_m1 B NM_006988.3 AF060152.1,AF170084.1,AF207664.1,BC036515.2,BX647388.1,AB037767.1
2 PROX1 prospero-related homeobox 1 Hs00160463_m1 L NM_002763.3 U44060.1,BC024201.2
3 ADD3 adducin 3 (gamma) Hs00249895_m1 L NM_016824.3 AB209810.1,BX647442.1,BC057285.1,BC062559.1,BC043143.1,AK223270.1
4 DNER delta-notch-like EGF repeat-containing transmembrane Hs00294564_m1 B NM_139072.2 AL137311.1,BC024766.2,AY358891.1,AF442487.1,BC035009.1
5 MAF v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian) Hs00193519_m1 L NM_005360.3 AF055377.1
6 KDR kinase insert domain receptor (a type III receptor tyrosine kinase) Hs00176676_m1 EC NM_002253.1 AF035121.1,AF063658.1,AB209901.1
7 COLEC12 collectin sub-family member 12 Hs00560477_m1 L NM_030781.2,NM_130386.1 AB038518.1,AB052103.1,AB034251.1,AB005145.1,AL713657.1,BC060789.1
8 LYN v-yes-1 Yamaguchi sarcoma viral related oncogene homolog Hs00176719_m1 L NM_002350.1 M16038.1,M79321.1,BC068551.1,BC075001.2,BC075002.2,BC059394.1
9 GAPDH glyceraldehyde-3-phosphate dehydrogenase Hs00266705_g1 HK NM_002046.2 M33197.1,X01677.1,X53778.1,AK026525.1,AY007133.1,BC009081.1,BC001601.1,BC083511.1,BC026907.1,AB062273.1,BC029340.1,BC020308.1,BC023632.2,BC013310.2
10 GIPC2 GIPC PDZ domain containing family, member 2 Hs00214273_m1 L NM_017655.4 AK000082.1,AB073737.1,BC036075.1
11 18S Eukaryotic 18S rRNA Hs99999901_s1 HK 18S
12 IL6 interleukin 6 (interferon, beta 2) Hs00174131_m1 B NM_000600.1 X04403.1,M14584.1,M18403.1,M29150.1,X04430.1,X04602.1,M54894.1,S56892.1,CR450296.1,BT019748.1,BT019749.1,A09363.1,BC015511.1
13 VWF von Willebrand factor Hs00169795_m1 EC NM_000552.2 X04146.1,X04385.1,M10321.1
14 TEK TEK tyrosine kinase, endothelial (venous malformations, multiple cutaneous and mucosal) Hs00176096_m1 EC NM_000459.1 L06139.1,AB208796.1,BC035514.1,AB086825.1
15 RPLP0 ribosomal protein, large, P0 Hs99999902_m1 HK NM_053275.3,NM_001002.3 M17885.1,BC008594.1,BC005863.2,BC009867.2,BF131912.1,BC000087.2,BC000345.2,BC000752.2,BC001127.2,BC001834.2,BC003655.2,BC008092.1,BC070194.1,BC015690.1,AK129754.1,AK129823.1,BC015173.1,BC019014.2,AK222468.1,AK222571.1
16 FAP fibroblast activation protein, alpha Hs00189476_m1 B NM_004460.2 U09278.1,U76833.1,AF007822.1,BC026250.1
17 FGF12 fibroblast growth factor 12 Hs00253282_m1 L NM_021032.2 U66197.1,AK125307.1
18 MEF2C MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C) Hs00231149_m1 L NM_002397.2 L08895.1,S57212.1,BC026341.1,AL833268.1,AL833274.1
19 CD44 CD44 antigen (homing function and Indian blood group system) Hs00174139_m1 B NM_001001389.1,NM_001001390.1,NM_001001391.1,NM_000610.3 M59040.1,M24915.1,M25078.1,X56794.1,X55150.1,X66733.1,U40373.1,S66400.1,AJ251595.1,BC004372.1,BC067348.1,AK129808.1,BC052287.1,AY101192.1,AY101193.1,AL832642.2
20 PLAU plasminogen activator, urokinase Hs00170182_m1 B NM_002658.2 D00244.1,M15476.1,D11143.1,Z36790.1,K03226.1,AY820134.1,A18397.1,A35395.1,BC013575.2,BT007391.1

Total number of rows: 192

Table truncated, full table size 26 Kbytes.




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