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Platform GPL6802 Query DataSets for GPL6802
Status Public on Oct 04, 2008
Title Low Density Microvascular Differentiation Array (LD-MDA) version 1.0
Technology type RT-PCR
Distribution virtual
Organism Homo sapiens
Manufacturer Applied Biosystems
Manufacture protocol Applied Biosystems Primer Assay - gene selection based on LEC vs BEC differential expressions. The 384-well micro-fluidic cards were produced with pre-designed primer pairs and FAM-labeled TaqMan probes for each of the 96 selected genes in duplicate, with two sample reservoirs per card.
Description Microfluidic 384-well TaqMan™ real time RT-PCR platform
Submission date Apr 30, 2008
Last update date Oct 04, 2008
Contact name Jay Woo Shin
Organization name ETH Zurich
Department Institute of Pharmaceutical Sciences
Lab Michael Detmar
Street address Wolfgang-Paulistrasse 10; HCI H394
City Zurich
State/province Zurich
ZIP/Postal code 8093
Country Switzerland
Samples (29) GSM285656, GSM285657, GSM285658, GSM285659, GSM285660, GSM285661 
Series (2)
GSE11306 Quantification of vascular lineage-specific differentiation (cell type comparison)
GSE11308 Quantification of vascular lineage-specific differentiation

Data table header descriptions
Gene Symbol Gene symbol
Gene Name Gene name (Title)
Assay ID
TYPE Gene association (classification); L = lymphatic-specific, B = blood vessel-specific, EC= panendothelial, HK= housekeeping (endogenous)
GB_LIST RefSeq accession number
Public Genbank mRNA

Data table
ID Gene Symbol Gene Name Assay ID TYPE GB_LIST Public Genbank mRNA SPOT_ID
1 ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 Hs00199608_m1 B NM_006988.3 AF060152.1,AF170084.1,AF207664.1,BC036515.2,BX647388.1,AB037767.1
2 PROX1 prospero-related homeobox 1 Hs00160463_m1 L NM_002763.3 U44060.1,BC024201.2
3 ADD3 adducin 3 (gamma) Hs00249895_m1 L NM_016824.3 AB209810.1,BX647442.1,BC057285.1,BC062559.1,BC043143.1,AK223270.1
4 DNER delta-notch-like EGF repeat-containing transmembrane Hs00294564_m1 B NM_139072.2 AL137311.1,BC024766.2,AY358891.1,AF442487.1,BC035009.1
5 MAF v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian) Hs00193519_m1 L NM_005360.3 AF055377.1
6 KDR kinase insert domain receptor (a type III receptor tyrosine kinase) Hs00176676_m1 EC NM_002253.1 AF035121.1,AF063658.1,AB209901.1
7 COLEC12 collectin sub-family member 12 Hs00560477_m1 L NM_030781.2,NM_130386.1 AB038518.1,AB052103.1,AB034251.1,AB005145.1,AL713657.1,BC060789.1
8 LYN v-yes-1 Yamaguchi sarcoma viral related oncogene homolog Hs00176719_m1 L NM_002350.1 M16038.1,M79321.1,BC068551.1,BC075001.2,BC075002.2,BC059394.1
9 GAPDH glyceraldehyde-3-phosphate dehydrogenase Hs00266705_g1 HK NM_002046.2 M33197.1,X01677.1,X53778.1,AK026525.1,AY007133.1,BC009081.1,BC001601.1,BC083511.1,BC026907.1,AB062273.1,BC029340.1,BC020308.1,BC023632.2,BC013310.2
10 GIPC2 GIPC PDZ domain containing family, member 2 Hs00214273_m1 L NM_017655.4 AK000082.1,AB073737.1,BC036075.1
11 18S Eukaryotic 18S rRNA Hs99999901_s1 HK 18S
12 IL6 interleukin 6 (interferon, beta 2) Hs00174131_m1 B NM_000600.1 X04403.1,M14584.1,M18403.1,M29150.1,X04430.1,X04602.1,M54894.1,S56892.1,CR450296.1,BT019748.1,BT019749.1,A09363.1,BC015511.1
13 VWF von Willebrand factor Hs00169795_m1 EC NM_000552.2 X04146.1,X04385.1,M10321.1
14 TEK TEK tyrosine kinase, endothelial (venous malformations, multiple cutaneous and mucosal) Hs00176096_m1 EC NM_000459.1 L06139.1,AB208796.1,BC035514.1,AB086825.1
15 RPLP0 ribosomal protein, large, P0 Hs99999902_m1 HK NM_053275.3,NM_001002.3 M17885.1,BC008594.1,BC005863.2,BC009867.2,BF131912.1,BC000087.2,BC000345.2,BC000752.2,BC001127.2,BC001834.2,BC003655.2,BC008092.1,BC070194.1,BC015690.1,AK129754.1,AK129823.1,BC015173.1,BC019014.2,AK222468.1,AK222571.1
16 FAP fibroblast activation protein, alpha Hs00189476_m1 B NM_004460.2 U09278.1,U76833.1,AF007822.1,BC026250.1
17 FGF12 fibroblast growth factor 12 Hs00253282_m1 L NM_021032.2 U66197.1,AK125307.1
18 MEF2C MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C) Hs00231149_m1 L NM_002397.2 L08895.1,S57212.1,BC026341.1,AL833268.1,AL833274.1
19 CD44 CD44 antigen (homing function and Indian blood group system) Hs00174139_m1 B NM_001001389.1,NM_001001390.1,NM_001001391.1,NM_000610.3 M59040.1,M24915.1,M25078.1,X56794.1,X55150.1,X66733.1,U40373.1,S66400.1,AJ251595.1,BC004372.1,BC067348.1,AK129808.1,BC052287.1,AY101192.1,AY101193.1,AL832642.2
20 PLAU plasminogen activator, urokinase Hs00170182_m1 B NM_002658.2 D00244.1,M15476.1,D11143.1,Z36790.1,K03226.1,AY820134.1,A18397.1,A35395.1,BC013575.2,BT007391.1

Total number of rows: 192

Table truncated, full table size 26 Kbytes.

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Supplementary data files not provided

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