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Status
Public on Oct 04, 2008
Title
Low Density Microvascular Differentiation Array (LD-MDA) version 1.0
Technology type
RT-PCR
Distribution
virtual
Organism
Homo sapiens
Manufacturer
Applied Biosystems
Manufacture protocol
Applied Biosystems Primer Assay - gene selection based on LEC vs BEC differential expressions. The 384-well micro-fluidic cards were produced with pre-designed primer pairs and FAM-labeled TaqMan probes for each of the 96 selected genes in duplicate, with two sample reservoirs per card.
Description
Microfluidic 384-well TaqMan™ real time RT-PCR platform
Submission date
Apr 30, 2008
Last update date
Oct 04, 2008
Contact name
Jay Woo Shin
E-mail(s)
jay.shin@gsc.riken.jp
Organization name
ETH Zurich
Department
Institute of Pharmaceutical Sciences
Lab
Michael Detmar
Street address
Wolfgang-Paulistrasse 10; HCI H394
City
Zurich
State/province
Zurich
ZIP/Postal code
8093
Country
Switzerland
Samples (29)
GSM285656 , GSM285657 , GSM285658 , GSM285659 , GSM285660 , GSM285661
GSM285662 ,
GSM285663 ,
GSM285664 ,
GSM285665 ,
GSM285666 ,
GSM285667 ,
GSM285668 ,
GSM285669 ,
GSM285670 ,
GSM285671 ,
GSM285672 ,
GSM285673 ,
GSM285674 ,
GSM285675 ,
GSM285676 ,
GSM285677 ,
GSM285678 ,
GSM285679 ,
GSM285680 ,
GSM285681 ,
GSM285682 ,
GSM285683 ,
GSM285684
Series (2)
GSE11306
Quantification of vascular lineage-specific differentiation (cell type comparison)
GSE11308
Quantification of vascular lineage-specific differentiation
Data table header descriptions
ID
Gene Symbol
Gene symbol
Gene Name
Gene name (Title)
Assay ID
TYPE
Gene association (classification); L = lymphatic-specific, B = blood vessel-specific, EC= panendothelial, HK= housekeeping (endogenous)
GB_LIST
RefSeq accession number
Public Genbank mRNA
SPOT_ID
Data table
ID
Gene Symbol
Gene Name
Assay ID
TYPE
GB_LIST
Public Genbank mRNA
SPOT_ID
1
ADAMTS1
ADAM metallopeptidase with thrombospondin type 1 motif, 1
Hs00199608_m1
B
NM_006988.3
AF060152.1,AF170084.1,AF207664.1,BC036515.2,BX647388.1,AB037767.1
2
PROX1
prospero-related homeobox 1
Hs00160463_m1
L
NM_002763.3
U44060.1,BC024201.2
3
ADD3
adducin 3 (gamma)
Hs00249895_m1
L
NM_016824.3
AB209810.1,BX647442.1,BC057285.1,BC062559.1,BC043143.1,AK223270.1
4
DNER
delta-notch-like EGF repeat-containing transmembrane
Hs00294564_m1
B
NM_139072.2
AL137311.1,BC024766.2,AY358891.1,AF442487.1,BC035009.1
5
MAF
v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)
Hs00193519_m1
L
NM_005360.3
AF055377.1
6
KDR
kinase insert domain receptor (a type III receptor tyrosine kinase)
Hs00176676_m1
EC
NM_002253.1
AF035121.1,AF063658.1,AB209901.1
7
COLEC12
collectin sub-family member 12
Hs00560477_m1
L
NM_030781.2,NM_130386.1
AB038518.1,AB052103.1,AB034251.1,AB005145.1,AL713657.1,BC060789.1
8
LYN
v-yes-1 Yamaguchi sarcoma viral related oncogene homolog
Hs00176719_m1
L
NM_002350.1
M16038.1,M79321.1,BC068551.1,BC075001.2,BC075002.2,BC059394.1
9
GAPDH
glyceraldehyde-3-phosphate dehydrogenase
Hs00266705_g1
HK
NM_002046.2
M33197.1,X01677.1,X53778.1,AK026525.1,AY007133.1,BC009081.1,BC001601.1,BC083511.1,BC026907.1,AB062273.1,BC029340.1,BC020308.1,BC023632.2,BC013310.2
10
GIPC2
GIPC PDZ domain containing family, member 2
Hs00214273_m1
L
NM_017655.4
AK000082.1,AB073737.1,BC036075.1
11
18S
Eukaryotic 18S rRNA
Hs99999901_s1
HK
18S
12
IL6
interleukin 6 (interferon, beta 2)
Hs00174131_m1
B
NM_000600.1
X04403.1,M14584.1,M18403.1,M29150.1,X04430.1,X04602.1,M54894.1,S56892.1,CR450296.1,BT019748.1,BT019749.1,A09363.1,BC015511.1
13
VWF
von Willebrand factor
Hs00169795_m1
EC
NM_000552.2
X04146.1,X04385.1,M10321.1
14
TEK
TEK tyrosine kinase, endothelial (venous malformations, multiple cutaneous and mucosal)
Hs00176096_m1
EC
NM_000459.1
L06139.1,AB208796.1,BC035514.1,AB086825.1
15
RPLP0
ribosomal protein, large, P0
Hs99999902_m1
HK
NM_053275.3,NM_001002.3
M17885.1,BC008594.1,BC005863.2,BC009867.2,BF131912.1,BC000087.2,BC000345.2,BC000752.2,BC001127.2,BC001834.2,BC003655.2,BC008092.1,BC070194.1,BC015690.1,AK129754.1,AK129823.1,BC015173.1,BC019014.2,AK222468.1,AK222571.1
16
FAP
fibroblast activation protein, alpha
Hs00189476_m1
B
NM_004460.2
U09278.1,U76833.1,AF007822.1,BC026250.1
17
FGF12
fibroblast growth factor 12
Hs00253282_m1
L
NM_021032.2
U66197.1,AK125307.1
18
MEF2C
MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C)
Hs00231149_m1
L
NM_002397.2
L08895.1,S57212.1,BC026341.1,AL833268.1,AL833274.1
19
CD44
CD44 antigen (homing function and Indian blood group system)
Hs00174139_m1
B
NM_001001389.1,NM_001001390.1,NM_001001391.1,NM_000610.3
M59040.1,M24915.1,M25078.1,X56794.1,X55150.1,X66733.1,U40373.1,S66400.1,AJ251595.1,BC004372.1,BC067348.1,AK129808.1,BC052287.1,AY101192.1,AY101193.1,AL832642.2
20
PLAU
plasminogen activator, urokinase
Hs00170182_m1
B
NM_002658.2
D00244.1,M15476.1,D11143.1,Z36790.1,K03226.1,AY820134.1,A18397.1,A35395.1,BC013575.2,BT007391.1
Total number of rows: 192 Table truncated, full table size 26 Kbytes .
Supplementary data files not provided