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GEO accession:
Series GSE108690
Query DataSets for GSE108690
Status
Public on Oct 21, 2019
Title
Cistromic reprogramming of the diurnal glucocorticoid hormone response by high fat diet
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
31706703
Submission date
Jan 03, 2018
Last update date
Jan 20, 2020
Contact name
Nina Henriette Uhlenhaut
E-mail(s)
henriette.uhlenhaut@helmholtz-muenchen.de
Organization name
HelmholtzZentrum München - IDC
Department
Molecular Endocrinology
Lab
Uhlenhaut IDC
Street address
Ingolstädter Landstraße 1, Neuherberg
City
Munich
State/province
Bavaria
ZIP/Postal code
D-85764
Country
Germany
Platforms (3)
GPL17021
Illumina HiSeq 2500 (Mus musculus)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL21103
Illumina HiSeq 4000 (Mus musculus)
Samples (176)
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GSM2911206
RNA-seq_ZT0 control REP1
GSM2911207
RNA-seq_ZT0 control REP2
GSM2911208
RNA-seq_ZT0 control REP3
GSM2911210
RNA-seq_ZT4 control REP2
GSM2911211
RNA-seq_ZT4 control REP3
GSM2911212
RNA-seq_ZT8 control REP1
GSM2911213
RNA-seq_ZT8 control REP2
GSM2911214
RNA-seq_ZT8 control REP3
GSM2911215
RNA-seq_ZT12 control REP1
GSM2911216
RNA-seq_ZT12 control REP2
GSM2911217
RNA-seq_ZT12 control REP3
GSM2911218
RNA-seq_ZT16 control REP1
GSM2911219
RNA-seq_ZT16 control REP2
GSM2911220
RNA-seq_ZT16 control REP3
GSM2911221
RNA-seq_ZT20 control REP1
GSM2911222
RNA-seq_ZT20 control REP2
GSM2911223
RNA-seq_ZT20 control REP3
GSM2911224
RNA-seq_ZT0 HFD REP1
GSM2911225
RNA-seq_ZT0 HFD REP2
GSM2911226
RNA-seq_ZT0 HFD REP3
GSM2911227
RNA-seq_ZT4 HFD REP1
GSM2911228
RNA-seq_ZT4 HFD REP2
GSM2911229
RNA-seq_ZT4 HFD REP3
GSM2911230
RNA-seq_ZT8 HFD REP1
GSM2911231
RNA-seq_ZT8 HFD REP2
GSM2911232
RNA-seq_ZT8 HFD REP3
GSM2911233
RNA-seq_ZT12 HFD REP1
GSM2911234
RNA-seq_ZT12 HFD REP2
GSM2911235
RNA-seq_ZT12 HFD REP3
GSM2911236
RNA-seq_ZT16 HFD REP1
GSM2911237
RNA-seq_ZT16 HFD REP2
GSM2911238
RNA-seq_ZT16 HFD REP3
GSM2911239
RNA-seq_ZT20 HFD REP1
GSM2911240
RNA-seq_ZT20 HFD REP2
GSM2911241
RNA-seq_ZT20 HFD REP3
GSM2911254
GR_ZT0 control REP1
GSM2911255
GR_ZT0 control REP2
GSM2911256
GR_ZT4 control REP1
GSM2911257
GR_ZT4 control REP2
GSM2911258
GR_ZT8 control REP1
GSM2911259
GR_ZT8 control REP2
GSM2911260
GR_ZT12 control REP1
GSM2911261
GR_ZT12 control REP2
GSM2911262
GR_ZT16 control REP1
GSM2911263
GR_ZT16 control REP2
GSM2911264
GR_ZT20 control REP1
GSM2911265
GR_ZT20 control REP2
GSM2911266
GR_ZT0 HFD REP1
GSM2911267
GR_ZT0 HFD REP2
GSM2911268
GR_ZT4 HFD REP1
GSM2911269
GR_ZT4 HFD REP2
GSM2911270
GR_ZT8 HFD REP1
GSM2911271
GR_ZT8 HFD REP2
GSM2911272
GR_ZT12 HFD REP1
GSM2911273
GR_ZT12 HFD REP2
GSM2911274
GR_ZT16 HFD REP1
GSM2911275
GR_ZT16 HFD REP2
GSM2911276
GR_ZT20 HFD REP1
GSM2911277
GR_ZT20 HFD REP2
GSM2911278
PPARA_ZT12 control REP1
GSM2911279
PPARA_ZT12 control REP2
GSM2911280
PPARA_ZT12 HFD REP1
GSM2911281
PPARA_ZT12 HFD REP2
GSM2911282
STAT5_ZT12 control REP1
GSM2911283
STAT5_ZT12 control REP2
GSM2911284
STAT5_ZT12 HFD REP1
GSM2911285
STAT5_ZT12 HFD REP2
GSM2911286
INPUT DNA
GSM2911287
GR knockout REP1
GSM3703240
H3K27ac_ZT0 control REP1
GSM3703241
H3K27ac_ZT0 control REP2
GSM3703242
H3K27ac_ZT0 HFD REP1
GSM3703243
H3K27ac_ZT0 HFD REP2
GSM3703244
H3K27ac_ZT12 control REP1
GSM3703245
H3K27ac_ZT12 control REP2
GSM3703246
H3K27ac_ZT12 HFD REP2
GSM3703247
H3K27ac_ZT12 HFD REP1
GSM4035176
RNA-Seq_ZT00 HFD KO REP 1
GSM4035177
RNA-Seq_ZT00 HFD KO REP 2
GSM4035178
RNA-Seq_ZT00 HFD KO REP 3
GSM4035179
RNA-Seq_ZT00 HFD WT REP 1
GSM4035180
RNA-Seq_ZT00 HFD WT REP 2
GSM4035181
RNA-Seq_ZT00 HFD WT REP 3
GSM4035182
RNA-Seq_ZT00 LFD KO REP 1
GSM4035183
RNA-Seq_ZT00 LFD KO REP 2
GSM4035184
RNA-Seq_ZT00 LFD KO REP 3
GSM4035185
RNA-Seq_ZT00 LFD WT REP 1
GSM4035186
RNA-Seq_ZT00 LFD WT REP 2
GSM4035187
RNA-Seq_ZT00 LFD WT REP 3
GSM4035188
RNA-Seq_ZT04 HFD KO REP 1
GSM4035189
RNA-Seq_ZT04 HFD KO REP 2
GSM4035190
RNA-Seq_ZT04 HFD KO REP 3
GSM4035191
RNA-Seq_ZT04 HFD WT REP 1
GSM4035192
RNA-Seq_ZT04 HFD WT REP 2
GSM4035193
RNA-Seq_ZT04 HFD WT REP 3
GSM4035194
RNA-Seq_ZT04 LFD KO REP 1
GSM4035195
RNA-Seq_ZT04 LFD KO REP 2
GSM4035196
RNA-Seq_ZT04 LFD KO REP 3
GSM4035197
RNA-Seq_ZT04 LFD WT REP 1
GSM4035198
RNA-Seq_ZT04 LFD WT REP 2
GSM4035199
RNA-Seq_ZT04 LFD WT REP 3
GSM4035200
RNA-Seq_ZT08 HFD KO REP 1
GSM4035201
RNA-Seq_ZT08 HFD KO REP 2
GSM4035202
RNA-Seq_ZT08 HFD WT REP 1
GSM4035203
RNA-Seq_ZT08 HFD WT REP 2
GSM4035204
RNA-Seq_ZT08 LFD KO REP 1
GSM4035205
RNA-Seq_ZT08 LFD KO REP 2
GSM4035206
RNA-Seq_ZT08 LFD WT REP 1
GSM4035207
RNA-Seq_ZT08 LFD WT REP 2
GSM4035208
RNA-Seq_ZT12 HFD KO REP 1
GSM4035209
RNA-Seq_ZT12 HFD KO REP 2
GSM4035210
RNA-Seq_ZT12 HFD KO REP 3
GSM4035211
RNA-Seq_ZT12 HFD WT REP 1
GSM4035212
RNA-Seq_ZT12 HFD WT REP 2
GSM4035213
RNA-Seq_ZT12 HFD WT REP 3
GSM4035214
RNA-Seq_ZT12 LFD KO REP 1
GSM4035215
RNA-Seq_ZT12 LFD KO REP 2
GSM4035216
RNA-Seq_ZT12 LFD KO REP 3
GSM4035217
RNA-Seq_ZT12 LFD WT REP 1
GSM4035218
RNA-Seq_ZT12 LFD WT REP 2
GSM4035219
RNA-Seq_ZT12 LFD WT REP 3
GSM4035220
RNA-Seq_ZT16 HFD KO REP 1
GSM4035221
RNA-Seq_ZT16 HFD KO REP 2
GSM4035222
RNA-Seq_ZT16 HFD KO REP 3
GSM4035223
RNA-Seq_ZT16 HFD WT REP 1
GSM4035224
RNA-Seq_ZT16 HFD WT REP 2
GSM4035225
RNA-Seq_ZT16 HFD WT REP 3
GSM4035226
RNA-Seq_ZT16 LFD KO REP 1
GSM4035227
RNA-Seq_ZT16 LFD KO REP 2
GSM4035228
RNA-Seq_ZT16 LFD WT REP 1
GSM4035229
RNA-Seq_ZT16 LFD WT REP 2
GSM4035230
RNA-Seq_ZT16 LFD WT REP 3
GSM4035231
RNA-Seq_ZT20 HFD KO REP 1
GSM4035232
RNA-Seq_ZT20 HFD KO REP 2
GSM4035233
RNA-Seq_ZT20 HFD KO REP 3
GSM4035234
RNA-Seq_ZT20 HFD WT REP 1
GSM4035235
RNA-Seq_ZT20 HFD WT REP 2
GSM4035236
RNA-Seq_ZT20 HFD WT REP 3
GSM4035237
RNA-Seq_ZT20 LFD KO REP 1
GSM4035238
RNA-Seq_ZT20 LFD KO REP 2
GSM4035239
RNA-Seq_ZT20 LFD KO REP 3
GSM4035240
RNA-Seq_ZT20 LFD WT REP 1
GSM4035241
RNA-Seq_ZT20 LFD WT REP 2
GSM4035242
RNA-Seq_ZT20 LFD WT REP 3
GSM4035243
RNA-Seq_HFD control at ZT0 and sac. at ZT4 REP 1
GSM4035244
RNA-Seq_HFD control at ZT0 and sac. at ZT4 REP 2
GSM4035245
RNA-Seq_HFD control at ZT12 and sac. at ZT16 REP 1
GSM4035246
RNA-Seq_HFD control at ZT12 and sac. at ZT16 REP 2
GSM4035247
RNA-Seq_LFD control at ZT0 and sac. at ZT4 REP 1
GSM4035248
RNA-Seq_LFD control at ZT0 and sac. at ZT4 REP 2
GSM4035249
RNA-Seq_LFD control at ZT12 and sac. at ZT16 REP 1
GSM4035250
RNA-Seq_LFD control at ZT12 and sac. at ZT16 REP 2
GSM4035251
RNA-Seq_HFD Dex treated at ZT12 and sac. at ZT16 REP 1
GSM4035252
RNA-Seq_HFD Dex treated at ZT12 and sac. at ZT16 REP 2
GSM4035253
RNA-Seq_HFD Dex treated at ZT12 and sac. at ZT16 REP 3
GSM4035254
RNA-Seq_HFD Dex treated at ZT0 and sac. at ZT4 REP 1
GSM4035255
RNA-Seq_HFD Dex treated at ZT0 and sac. at ZT4 REP 2
GSM4035256
RNA-Seq_HFD Dex treated at ZT0 and sac. at ZT4 REP 3
GSM4035257
RNA-Seq_LFD Dex treated at ZT12 and sac. at ZT16 REP 1
GSM4035258
RNA-Seq_LFD Dex treated at ZT12 and sac. at ZT16 REP 2
GSM4035259
RNA-Seq_LFD Dex treated at ZT12 and sac. at ZT16 REP 3
GSM4035260
RNA-Seq_LFD Dex treated at ZT0 and sac. at ZT4 REP 1
GSM4035261
RNA-Seq_LFD Dex treated at ZT0 and sac. at ZT4 REP 2
GSM4035262
RNA-Seq_LFD Dex treated at ZT0 and sac. at ZT4 REP 3
GSM4096048
DL8pt: DEX_ZT12 control REP1
GSM4096049
DL9pt: DEX_ZT12 control REP2
GSM4096050
DH8pt: DEX_ZT12 HFD REP1
GSM4096051
DH9pt: DEX_ZT12 HFD REP2
GSM4096052
DL8sc: DEX_ZT12 control REP1
GSM4096053
DL9sc: DEX_ZT12 control REP2
GSM4096054
DH8sc: DEX_ZT12 HFD REP1
GSM4096055
DH9sc: DEX_ZT12 HFD REP2
GSM4096056
DH_1: DEX_ZT0 HFD REP1
GSM4096057
DH_2: DEX_ZT0 HFD REP2
GSM4096058
DL_1: DEX_ZT0 control REP1
GSM4096059
DL_2: DEX_ZT0 control REP2
This SuperSeries is composed of the following SubSeries:
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GSE108688
GR cistromes reprogramming by High Fat Diet [RNA-seq]
GSE108689
GR cistromes reprogramming by High Fat Diet [ChIP-seq: GR day/night]
GSE129230
GR cistromes reprogramming by High Fat Diet [ChIP-seq H3K27ac]
GSE137978
GR cistromes reprogramming by High Fat Diet [ChIP-seq: GR DEX]
Relations
BioProject
PRJNA428302
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GSE108690_RAW.tar
37.6 Mb
(http)
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