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| Status |
Public on Apr 10, 2019 |
| Title |
Vast differences in organ-specific rhythms of transcription in field-grown sugarcane |
| Platform organism |
Saccharum officinarum |
| Sample organism |
Saccharum hybrid cultivar SP80-3280 |
| Experiment type |
Expression profiling by array
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| Summary |
Sugarcane (Saccharum hybrid, SP80-3280) was grown in the field in Araras (Brazil) for 9 months. Leaves +1 (F1), internodes 1&2 (I1), and internodes 5 (I5) were harvested every 2 h for 26 h, starting 2h before dawn.
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| Overall design |
Samples were collected from 2h before dawn (00) of one day to 2 h after dawn of the next day (26). Leaves +1 (F1), internodes 1&2 (I1), and internodes 5 (I5) were harvested. Samples were taken every 2 h were labelled accordingly. Two biological replicates of each time point were made, with a dye swap with the reference. The reference used was an equimolar solution of all samples.
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| Contributor(s) |
Dantas LB, de Lima ON, Nishiyama YM Jr, Carneiro SC, Souza MG, Hotta TC |
| Citation(s) |
32300143 |
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| Submission date |
Apr 09, 2019 |
| Last update date |
Apr 27, 2020 |
| Contact name |
Carlos T Hotta |
| E-mail(s) |
hotta@iq.usp.br
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| Organization name |
University of Sao Paulo
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| Department |
Biochemistry
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| Lab |
Plant Molecular Physiology
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| Street address |
Av. Lineu Prestes, 748
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| City |
Sao Paulo |
| State/province |
SP |
| ZIP/Postal code |
05508010 |
| Country |
Brazil |
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| Platforms (1) |
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| Samples (84)
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| Relations |
| BioProject |
PRJNA531694 |
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