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Status
Public on Jul 31, 2012
Title
SUCEST-FUN Sugarcane 44k v1.0
Technology type
spotted oligonucleotide
Distribution
custom-commercial
Organism
Saccharum officinarum Manufacturer
Agilent Technologies
Manufacture protocol
We labeled, hybridized, and washed the arrays according to Agilent's Two-Color Microarray-Based Gene Expression Analysis(Quick Amp labeling) Protocol (version 5.7, March 2008)
Support
glass
Description
CaneRegNet microarray (44k multiplex chip, agilent) was designed using an in-house developed method for empirical selection of best performing probes (60bp long oligomers) for each SAS (Sugarcane Assembled Sequence - Pre Selection Strategy based on gene function and categorization). Were designed two probes for each cluster SAS from SUCEST Project, one in the sense orientation and another one in the antisense orientation if available or one sense probe. The microarray contain 21902 oligo probes in sense and antisense orientation corresponding of a total of 14522 SAS.
Contributor(s)
Lembke CG , Nishiyama-Jr MY , Sato PM , de Andrade RF , Souza GM Submission date
Nov 09, 2011
Last update date
Aug 03, 2016
Contact name
Milton Yutaka Nishiyama Jr
E-mail(s)
yutakajr@gmail.com URL
http://sucest-fun.org Organization name
Universidade de São Paulo - USP
Department
Biochemistry
Lab
Signal Transduction Laboratory
Street address
Av. Professor Lineu Prestes, 748
City
São Paulo
State/province
São Paulo
ZIP/Postal code
05508-000
Country
Brazil
Samples (224)
GSM830125 , GSM830126 , GSM830127 , GSM830128 , GSM830129 , GSM830130
GSM1048798 ,
GSM1048799 ,
GSM1048800 ,
GSM1048801 ,
GSM1048802 ,
GSM1048803 ,
GSM1048804 ,
GSM1048805 ,
GSM1048806 ,
GSM1048807 ,
GSM1048808 ,
GSM1048809 ,
GSM1048810 ,
GSM1048811 ,
GSM1048812 ,
GSM1048813 ,
GSM1048814 ,
GSM1048815 ,
GSM1048816 ,
GSM1048817 ,
GSM1048818 ,
GSM1048819 ,
GSM1084208 ,
GSM1084209 ,
GSM1084210 ,
GSM1084211 ,
GSM1084212 ,
GSM1084213 ,
GSM1084214 ,
GSM1084215 ,
GSM1084216 ,
GSM1084217 ,
GSM1084218 ,
GSM1084219 ,
GSM1084220 ,
GSM1084221 ,
GSM1084222 ,
GSM1084223 ,
GSM1084224 ,
GSM1084225 ,
GSM1084226 ,
GSM1084227 ,
GSM1084228 ,
GSM1084229 ,
GSM1084230 ,
GSM1084231 ,
GSM1084232 ,
GSM1084233 ,
GSM1084234 ,
GSM1084235 ,
GSM1084236 ,
GSM1084237 ,
GSM2341413 ,
GSM2341414 ,
GSM2341415 ,
GSM2341416 ,
GSM3560639 ,
GSM3560640 ,
GSM3560641 ,
GSM3560642 ,
GSM3560643 ,
GSM3560644 ,
GSM3560645 ,
GSM3560646 ,
GSM3560647 ,
GSM3560648 ,
GSM3560649 ,
GSM3560650 ,
GSM3560651 ,
GSM3560652 ,
GSM3560653 ,
GSM3560654 ,
GSM3560655 ,
GSM3560656 ,
GSM3560657 ,
GSM3560658 ,
GSM3560659 ,
GSM3560660 ,
GSM3560661 ,
GSM3560662 ,
GSM3560663 ,
GSM3560664 ,
GSM3560665 ,
GSM3560666 ,
GSM3560667 ,
GSM3560668 ,
GSM3562070 ,
GSM3562071 ,
GSM3562072 ,
GSM3562073 ,
GSM3562074 ,
GSM3562075 ,
GSM3562076 ,
GSM3562077 ,
GSM3562078 ,
GSM3562079 ,
GSM3562080 ,
GSM3562081 ,
GSM3562082 ,
GSM3562083 ,
GSM3562084 ,
GSM3562085 ,
GSM3562086 ,
GSM3562087 ,
GSM3562088 ,
GSM3562089 ,
GSM3562090 ,
GSM3562091 ,
GSM3562092 ,
GSM3562093 ,
GSM3562134 ,
GSM3562135 ,
GSM3562136 ,
GSM3562137 ,
GSM3562138 ,
GSM3562139 ,
GSM3562140 ,
GSM3562141 ,
GSM3562142 ,
GSM3562143 ,
GSM3562144 ,
GSM3562145 ,
GSM3562146 ,
GSM3562147 ,
GSM3562148 ,
GSM3562149 ,
GSM3562150 ,
GSM3562151 ,
GSM3562152 ,
GSM3562153 ,
GSM3562154 ,
GSM3562155 ,
GSM3562156 ,
GSM3562157 ,
GSM3715197 ,
GSM3715198 ,
GSM3715199 ,
GSM3715200 ,
GSM3715201 ,
GSM3715202 ,
GSM3715203 ,
GSM3715204 ,
GSM3715205 ,
GSM3715206 ,
GSM3715207 ,
GSM3715208 ,
GSM3715209 ,
GSM3715210 ,
GSM3715211 ,
GSM3715212 ,
GSM3715213 ,
GSM3715214 ,
GSM3715215 ,
GSM3715216 ,
GSM3715217 ,
GSM3715218 ,
GSM3715219 ,
GSM3715220 ,
GSM3715221 ,
GSM3715222 ,
GSM3715223 ,
GSM3715224 ,
GSM3715225 ,
GSM3715226 ,
GSM3715227 ,
GSM3715228 ,
GSM3715229 ,
GSM3715230 ,
GSM3715231 ,
GSM3715232 ,
GSM3715233 ,
GSM3715234 ,
GSM3715235 ,
GSM3715236 ,
GSM3715237 ,
GSM3715238 ,
GSM3715239 ,
GSM3715240 ,
GSM3715241 ,
GSM3715242 ,
GSM3715243 ,
GSM3715244 ,
GSM3715245 ,
GSM3715246 ,
GSM3715247 ,
GSM3715248 ,
GSM3715249 ,
GSM3715250 ,
GSM3715251 ,
GSM3715252 ,
GSM3715253 ,
GSM3715254 ,
GSM3715255 ,
GSM3715256 ,
GSM3715257 ,
GSM3715258 ,
GSM3715259 ,
GSM3715260 ,
GSM3715261 ,
GSM3715262 ,
GSM3715263 ,
GSM3715264 ,
GSM3715265 ,
GSM3715266 ,
GSM3715267 ,
GSM3715268 ,
GSM3715269 ,
GSM3715270 ,
GSM3715271 ,
GSM3715272 ,
GSM3715273 ,
GSM3715274 ,
GSM3715275 ,
GSM3715276 ,
GSM3715277 ,
GSM3715278 ,
GSM3715279 ,
GSM3715280 Series (9)
GSE33574 Sugarcane Expression Data from Stress Time Series
GSE42725 Circadian rhythms of sense and antisense transcription in a highly polyploid crop.
GSE44389 Sucrose accumulation regulation revealed through studies of the transcriptome and physiology in breeding populations of sugarcane
GSE87826 Sugarcane transcriptome: Lxx inoculated (LxxI) vs. mocked inoculated (MI) plants
GSE124990 SP80-3280 growth and maturation field 2
GSE125067 SP80-3280 growth and maturation field 1
GSE125069 SP80-3280 drought and re-watering
GSE125070 Sugarcane drought experiment under field conditions
GSE129543 Vast differences in organ-specific rhythms of transcription in field-grown sugarcane
Data table header descriptions ID a unique id for each 'spot'on the array
feature feature num
feature_row feature row
feature_column feature column
probe_name Unique identifier from Sucest-Fun Project - Oligo Accession Number
CLONE_ID Name of EST Sequence
GB_ACC GenBank Accession Number
SPOT_ID
45220 2844 Kbytes .Supplementary data files not provided
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