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GEO accession:
Series GSE161822
Query DataSets for GSE161822
Status
Public on Sep 15, 2022
Title
DNA replication timing directly regulates the frequency of oncogenic chromosomal translocations
Organism
Mus musculus
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
36108018
Submission date
Nov 19, 2020
Last update date
Nov 29, 2022
Contact name
Tobias Neumann
Organization name
IMP
Street address
Campus-Vienna-Biocenter 1
City
Vienna
ZIP/Postal code
1030
Country
Austria
Platforms (3)
GPL17021
Illumina HiSeq 2500 (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
GPL24973
MinION (Mus musculus)
Samples (111)
Less...
More...
GSM4915147
CH12_HiC_shLacZ_1
GSM4915148
CH12_HiC_shLacZ_2
GSM4915149
CH12_HiC_shLacZ_3
GSM4915150
CH12_HiC_shMcm_1
GSM4915151
CH12_HiC_shMcm_2
GSM4915152
CH12_HiC_shMcm_3
GSM4915153
CH12_HiC_WT_1
GSM4915154
CH12_HiC_C13_deltaori_1
GSM4915155
CH12_LAM-HTGTS_shLacZ_unstimulated
GSM4915156
CH12_LAM-HTGTS_shMcm_unstimulated
GSM4915157
CH12_LAM-HTGTS_shLacZ_rep1
GSM4915158
CH12_LAM-HTGTS_shLacZ_rep2
GSM4915159
CH12_LAM-HTGTS_shLacZ_rep3
GSM4915160
CH12_LAM-HTGTS_shMcm_rep1
GSM4915161
CH12_LAM-HTGTS_shMcm_rep2
GSM4915162
CH12_LAM-HTGTS_shMcm_rep3
GSM4915163
CH12_LAM-HTGTS_WT_rep1
GSM4915164
CH12_LAM-HTGTS_WT_rep2
GSM4915165
CH12_LAM-HTGTS_WT_rep3
GSM4915167
CH12_LAM-HTGTS_C13_rep1
GSM4915168
CH12_LAM-HTGTS_C13_rep2
GSM4915169
CH12_LAM-HTGTS_C13_rep3
GSM4915171
CH12_LAM-HTGTS_C23_rep1
GSM4915172
CH12_LAM-HTGTS_C23_rep2
GSM4915173
CH12_LAM-HTGTS_C23_rep3
GSM4915174
CH12_LAM-HTGTS_C23_ctrl
GSM4915175
CH12_shLacZ_d3_earlyS_rep1
GSM4915176
CH12_shLacZ_d3_earlyS_rep2
GSM4915177
CH12_shLacZ_d3_lateS_rep1
GSM4915178
CH12_shLacZ_d3_lateS_rep2
GSM4915179
CH12_shLacZ_d3_G1S_rep1
GSM4915180
CH12_shLacZ_d3_G1S_rep2
GSM4915181
CH12_shMcm_d3_earlyS_rep1
GSM4915182
CH12_shMcm_d3_earlyS_rep2
GSM4915183
CH12_shMcm_d3_lateS_rep1
GSM4915184
CH12_shMcm_d3_lateS_rep2
GSM4915185
CH12_shMcm_d3_G1S_rep1
GSM4915186
CH12_shMcm_d3_G1S_rep2
GSM4915187
CH12_WT_earlyS_rep1
GSM4915188
CH12_WT_earlyS_rep2
GSM4915189
CH12_WT_lateS_rep1
GSM4915190
CH12_WT_lateS_rep2
GSM4915191
CH12_C13_earlyS_rep1
GSM4915192
CH12_C13_earlyS_rep2
GSM4915193
CH12_C13_lateS_rep1
GSM4915194
CH12_C13_lateS_rep2
GSM4915195
CH12_WTKI_earlyS_rep1
GSM4915196
CH12_WTKI_earlyS_rep2
GSM4915197
CH12_WTKI_lateS_rep1
GSM4915198
CH12_WTKI_lateS_rep2
GSM4915199
CH12_C2KI_earlyS_rep1
GSM4915200
CH12_C2KI_earlyS_rep2
GSM4915201
CH12_C2KI_lateS_rep1
GSM4915202
CH12_C2KI_lateS_rep2
GSM4915203
CH12_C13KI_earlyS_rep1
GSM4915204
CH12_C13KI_earlyS_rep2
GSM4915205
CH12_C13KI_lateS_rep1
GSM4915206
CH12_C13KI_lateS_rep2
GSM4915207
CH12_RNASeq_shLacZ_d3_rep1
GSM4915208
CH12_RNASeq_shLacZ_d3_rep2
GSM4915209
CH12_RNASeq_shLacZ_d3_rep3
GSM4915210
CH12_RNASeq_shMcm_d3_rep1
GSM4915211
CH12_RNASeq_shMcm_d3_rep2
GSM4915212
CH12_RNASeq_shMcm_d3_rep3
GSM4915213
CH12_RNASeq_WT_rep1
GSM4915214
CH12_RNASeq_WT_rep2
GSM4915215
CH12_RNASeq_WT_rep3
GSM4915216
CH12_RNASeq_C13_rep1
GSM4915217
CH12_RNASeq_C13_rep2
GSM4915218
CH12_RNASeq_C13_rep3
GSM4915219
CH12_RNASeq_C23_rep1
GSM4915220
CH12_RNASeq_C23_rep2
GSM4915221
CH12_RNASeq_C23_rep3
GSM4915222
CH12_SNSSeq_shLacZ_exp1_rep1
GSM4915223
CH12_SNSSeq_shLacZ_exp1_rep2
GSM4915224
CH12_SNSSeq_shMcm_exp1_rep1
GSM4915225
CH12_SNSSeq_shMcm_exp1_rep2
GSM4915226
CH12_SNSSeq_shLacZ_exp2_rep1
GSM4915227
CH12_SNSSeq_shLacZ_exp2_rep2
GSM4915228
CH12_SNSSeq_shMcm_exp2_rep1
GSM4915229
CH12_SNSSeq_shMcm_exp2_rep2
GSM5229455
CH12_PROCap_WT
GSM5623318
CH12_HiC_WT_2
GSM5623319
CH12_HiC_C13_deltaori_2
GSM5623320
CH12_HiC_C13_KI
GSM6171433
CH12_LAM-HTGTS_WT_restored_rep1
GSM6171434
CH12_LAM-HTGTS_WT_restored_rep2
GSM6171435
CH12_LAM-HTGTS_WT_restored_rep3
GSM6171436
CH12_LAM-HTGTS_C13_restored_rep1
GSM6171437
CH12_LAM-HTGTS_C13_restored_rep2
GSM6171438
CH12_LAM-HTGTS_C13_restored_rep3
GSM6171439
CH12_LAM-HTGTS_C2_restored_rep1
GSM6171440
CH12_LAM-HTGTS_C2_restored_rep2
GSM6171441
CH12_LAM-HTGTS_C2_restored_rep3
GSM6171442
CH12_LAM-HTGTS_WT_ctrl
GSM6171443
CH12_LAM-HTGTS_C13_deltaori_ctrl
GSM6171444
CH12_LAM-HTGTS_C13_restored_ctrl
GSM6171445
CH12_LAM-HTGTS_C2_restored_ctrl
GSM6171446
CH12_LAM-HTGTS_Irf2bp2_shLacZ_hotspots_rep1
GSM6171447
CH12_LAM-HTGTS_Irf2bp2_shLacZ_hotspots_rep2
GSM6171448
CH12_LAM-HTGTS_Irf2bp2_shLacZ_hotspots_rep3
GSM6171449
CH12_LAM-HTGTS_Irf2bp2_shLacZ
GSM6171450
CH12_LAM-HTGTS_Irf2bp2_shMcm
GSM6171451
CH12_LAM-HTGTS_Irf2bp2_shLacZ_ctrl
GSM6171452
CH12_LAM-HTGTS_Irf2bp2_shMcm_ctrl
GSM6171453
CH12_LAM-HTGTS_Irf2bp2_WT
GSM6171454
CH12_LAM-HTGTS_Irf2bp2_C13_deltaori
GSM6171455
CH12_LAM-HTGTS_Irf2bp2_C13_restored
GSM6171456
CH12_LAM-HTGTS_Irf2bp2_WT_ctrl
GSM6171457
CH12_LAM-HTGTS_Irf2bp2_C13_deltaori_ctrl
GSM6171458
CH12_LAM-HTGTS_Irf2bp2_C13_restored_ctrl
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE161817
DNA replication timing directly regulates the frequency of oncogenic chromosomal translocations [HiC]
GSE161818
DNA replication timing directly regulates the frequency of oncogenic chromosomal translocations
GSE161819
DNA replication timing directly regulates the frequency of oncogenic chromosomal translocations [Repli-seq]
GSE161820
DNA replication timing directly regulates the frequency of oncogenic chromosomal translocations [RNA-seq]
GSE161821
DNA replication timing directly regulates the frequency of oncogenic chromosomal translocations [SNS-seq]
GSE171623
DNA replication timing directly regulates the frequency of oncogenic chromosomal translocations [PRO-cap]
Relations
BioProject
PRJNA679566
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TXT
Supplementary file
Size
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File type/resource
GSE161822_RAW.tar
90.8 Mb
(http)
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TAR (of BW)
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