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| Status |
Public on Jul 01, 2005 |
| Title |
Testicular germ cell tumors and their histological subgroups |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
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| Summary |
Normal, premalignant and various histological subtypes of testicular germ cell tumor (TGCT) tissues were hybridized against Universal Human Reference RNA (Stratagene) onto Agilent 60mer oligo microarrays (GEO accession no GPL885). In vitro time series of two TGCT cell lines, NTERA2 and 2102Ep, treated with retinoic acid for 0, 3, and 7 days were also included. The data set (30 hybridizations) is particularly useful for comparisons between various histological subtypes of TGCT versus each other or versus normal testis.
Keywords = 2102Ep
Keywords = Agilent oligo microarrays
Keywords = carcinoma in situ
Keywords = choriocarcinoma
Keywords = development
Keywords = developmental biology
Keywords = differenciation
Keywords = embryogenesis
Keywords = embryonal carcinoma
Keywords = homo sapiens
Keywords = human
Keywords = human development
Keywords = intratubular germ cell tumor
Keywords = nonseminoma
Keywords = NTera2
Keywords = pluripotency
Keywords = pluripotent
Keywords = retinoic acid
Keywords = seminoma
Keywords = teratocarcinoma
Keywords = teratoma
Keywords = testis
Keywords = testicular germ cell tumor
Keywords = testicular neoplasm
Keywords = totipotency
Keywords = totipotent
Keywords = undifferentiated
Keywords = universal human reference RNA (Stratagene)
Keywords = yolk sac tumor
Keywords: other
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| Contributor(s) |
Skotheim RI, Lind GE, Monni O, Nesland JM, Abeler VM, Fosså SD, Duale N, Brunborg G, Kallioniemi O, Andrews PW, Lothe RA |
| Citation(s) |
15994931 |
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| Submission date |
Oct 04, 2004 |
| Last update date |
Dec 06, 2012 |
| Contact name |
Rolf I Skotheim |
| E-mail(s) |
rolf.i.skotheim@rr-research.no
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| Phone |
+47 2293 4000
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| Fax |
+47 2293 5767
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| URL |
http://www.radium.no/cancerprevention
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| Organization name |
Rikshospitalet-Radiumhospitalet Medical Center, Institute for Cancer Research
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| Department |
Department of Cancer Prevention
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| Street address |
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| City |
Oslo |
| ZIP/Postal code |
N-0310 |
| Country |
Norway |
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| Platforms (1) |
| GPL885 |
Agilent-011521 Human 1A Microarray G4110A (Feature Number version) |
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| Samples (30)
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| GSM31731 |
Testicular intratubular germ cell neoplasia 3879 |
| GSM31732 |
Testicular seminoma 0737 |
| GSM31803 |
Normal testis 9014 |
| GSM33594 |
Testicular intratubular germ cell neoplasia 1692 |
| GSM33595 |
Testicular seminoma 1113 |
| GSM33942 |
Testicular seminoma 1748 |
| GSM33943 |
Embryonal carcinoma 0502 |
| GSM33944 |
Embryonal carcinoma 0564 |
| GSM33945 |
Embryonal carcinoma 1017 |
| GSM33946 |
Embryonal carcinoma 1740 |
| GSM33947 |
Embryonal carcinoma 1838 |
| GSM33948 |
Choriocarcinoma 0915 |
| GSM33949 |
Yolk sac tumor 0216 |
| GSM33950 |
Yolk sac tumor 0307 |
| GSM33951 |
Yolk sac tumor 0738 |
| GSM33952 |
Yolk sac tumor 2110 |
| GSM33953 |
Teratoma 0691 |
| GSM33954 |
Teratoma 0696 |
| GSM34070 |
Teratoma 1282 |
| GSM34071 |
Teratoma 2201 |
| GSM34072 |
TGCT cell line 2102Ep/clone 2A6, untreated, undifferentiated |
| GSM34074 |
TGCT cell line 2102Ep/clone 2A6, treated 3 days with retinoic acid, undifferentiated |
| GSM34214 |
TGCT cell line 2102Ep/clone 2A6, treated 7 days with retinoic acid |
| GSM34216 |
TGCT cell line NTera2/clone D1, untreated, undifferentiated and pluripotent |
| GSM34217 |
TGCT cell line NTera2/clone D1, treated 3 days with retinoic acid, differentiated |
| GSM34218 |
TGCT cell line NTera2/clone D1, treated 7 days with retinoic acid, differentiated |
| GSM34234 |
Self versus self |
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| Relations |
| BioProject |
PRJNA90499 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE1818_RAW.tar |
657.4 Mb |
(http)(custom) |
TAR (of TIFF) |
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