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Series GSE224844 Query DataSets for GSE224844
Status Public on Apr 24, 2024
Title Trophectoderm biopsies of blastocysts for preimplantation genetic testing following in vitro fertilization and embryo culture increases epigenetic dysregulation in a mouse model [array]
Organism Mus musculus
Experiment type Methylation profiling by genome tiling array
Summary Trophectoderm biopsy for preimplantation genetic testing (TEBx) impacts placental and embryonic health during early development, with some alterations resolving while others worsening later in development.
We observed that at E12.5, IVF + TEBx had a worse outcome in terms of changes in DNA methylation and differential gene expression in placentas and whole embryos compared with IVF alone. These changes were reflected in alterations in placental morphology and blood vessel density. At E18.5, early changes in embryos were maintained or worsened, while molecular and morphological changes in the placenta were not different from the IVF group, except for changes in blood vessel density, which persisted. Of note is that most differences were sex specific. We conclude that TEBx has more detrimental effects in both mid-gestation placental and embryonic tissues, with changes in embryonic tissues persisting or worsening in later developmental stages compared to IVF alone. Additionally, consistent with previous work, we report sex differences in the observed effects. Finally, we identified that the addition of vitrification after TEBx has a more pronounced detrimental effect on placental and fetal health. Our findings provide additional support that more studies should be done to assess the impact of new procedures during ART to ensure healthy pregnancies and offspring outcomes.
 
Overall design Bisulfite converted DNA from 48 mouse E12.5 placenta samples from 3 different groups (Natural N=16, IVF N=16 and IVF+TEBx N=16) and two different sexes (Females N=24 and Males N=24) were hybridized to the Illumina Mouse Methylation285 12v1-0 BeadChip Array
 
Contributor(s) Rhon-Calderon EA, Vrooman LA, Rosier CL, Ord T, Manigi M, Schultz RM, Bartolomei MS
Citation(s) 37994669
Submission date Feb 08, 2023
Last update date Apr 25, 2024
Contact name Eric Alejandro Rhon Calderon
E-mail(s) eric.rhoncalderon@pennmedicine.upenn.edu
Phone 2152909019
Organization name University of Pennsylvania
Department Cell and Developmental Biology
Lab Bartolomei Lab
Street address 3400 Civic Center Blvd, Bldg 421, Floor 9-175
City Philadelphia
State/province Pennsylvania
ZIP/Postal code 19104
Country USA
 
Platforms (1)
GPL31191 Infinium MouseMethylation285 BeadChip
Samples (48)
GSM7034140 E12.5 Female IVF Placenta 1
GSM7034141 E12.5 Female IVF Placenta 2
GSM7034142 E12.5 Female IVF Placenta 3
This SubSeries is part of SuperSeries:
GSE225318 Trophectoderm biopsies of blastocysts for preimplantation genetic testing following in vitro fertilization and embryo culture increases epigenetic dysregulation in a mouse model
Relations
BioProject PRJNA932777

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE224844_RAW.tar 246.0 Mb (http)(custom) TAR (of IDAT)
GSE224844_Results_F_IVFTEBxvsNatural.xlsx 3.4 Mb (ftp)(http) XLSX
GSE224844_Results_F_IVF_Natural.xlsx 3.2 Mb (ftp)(http) XLSX
GSE224844_Results_M_IVFTEBxvsNatural.xlsx 3.4 Mb (ftp)(http) XLSX
GSE224844_Results_M_IVF_Natural.xlsx 3.5 Mb (ftp)(http) XLSX
Processed data included within Sample table
Processed data are available on Series record

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