GEO help: Mouse over screen elements for information.
Status
Public on Apr 11, 2022
Title
Infinium MouseMethylation285 BeadChip
Technology type
spotted oligonucleotide
Distribution
custom-commercial
Organism
Mus musculus Manufacturer
Illumina Inc
Manufacture protocol
see manufacturer's website
Description
MM285
Submission date
Jan 07, 2022
Last update date
Jan 10, 2022
Contact name
Yemin Lan
Organization name
University of Pennsylvania
Street address
3400 Civic Center Blvd
City
Philadelphia
State/province
PA
ZIP/Postal code
19104
Country
USA
Samples (106)
GSM5778405 , GSM5778406 , GSM5778407 , GSM5778409 , GSM5778410 , GSM5778411
GSM5778412 ,
GSM5778414 ,
GSM5778415 ,
GSM5778416 ,
GSM5778417 ,
GSM5778419 ,
GSM5778420 ,
GSM5778421 ,
GSM5778422 ,
GSM5778424 ,
GSM5778425 ,
GSM5778426 ,
GSM5778427 ,
GSM5778429 ,
GSM5778430 ,
GSM5778431 ,
GSM5778432 ,
GSM5778433 ,
GSM5778435 ,
GSM5778436 ,
GSM5778437 ,
GSM5778438 ,
GSM5778440 ,
GSM5778441 ,
GSM5778442 ,
GSM5778443 ,
GSM5778444 ,
GSM5778446 ,
GSM5888951 ,
GSM5888952 ,
GSM5888953 ,
GSM5888954 ,
GSM5888955 ,
GSM5888956 ,
GSM5888957 ,
GSM5888958 ,
GSM5888959 ,
GSM5888960 ,
GSM5888961 ,
GSM5888962 ,
GSM5888963 ,
GSM5888964 ,
GSM5888965 ,
GSM5888966 ,
GSM5888967 ,
GSM5888968 ,
GSM5888969 ,
GSM5888970 ,
GSM5888971 ,
GSM5888972 ,
GSM5888973 ,
GSM5888974 ,
GSM7034140 ,
GSM7034141 ,
GSM7034142 ,
GSM7034143 ,
GSM7034144 ,
GSM7034145 ,
GSM7034146 ,
GSM7034147 ,
GSM7034148 ,
GSM7034149 ,
GSM7034150 ,
GSM7034151 ,
GSM7034152 ,
GSM7034153 ,
GSM7034154 ,
GSM7034155 ,
GSM7034156 ,
GSM7034157 ,
GSM7034158 ,
GSM7034159 ,
GSM7034160 ,
GSM7034161 ,
GSM7034162 ,
GSM7034163 ,
GSM7034164 ,
GSM7034165 ,
GSM7034166 ,
GSM7034167 ,
GSM7034168 ,
GSM7034169 ,
GSM7034170 ,
GSM7034171 ,
GSM7034172 ,
GSM7034173 ,
GSM7034174 ,
GSM7034175 ,
GSM7034176 ,
GSM7034177 ,
GSM7034178 ,
GSM7034179 ,
GSM7034180 ,
GSM7034181 ,
GSM7034182 ,
GSM7034183 ,
GSM7034184 ,
GSM7034185 ,
GSM7034186 ,
GSM7034187 Series (4)
GSE193271 Placental abnormalities are associated with specific windows of embryo culture in a mouse model
GSE196547 Embryo Cryopreservation leads to sex-specific DNA methylation perturbations in both human and mouse placentas
GSE224844 Trophectoderm biopsies of blastocysts for preimplantation genetic testing following in vitro fertilization and embryo culture increases epigenetic dysregulation in a mouse model [array]
GSE225318 Trophectoderm biopsies of blastocysts for preimplantation genetic testing following in vitro fertilization and embryo culture increases epigenetic dysregulation in a mouse model
Data table header descriptions ID CpG_chrm CpG_beg CpG_end probe_strand genesUniq geneNames transcriptTypes transcriptIDs distToTSS CGI CGIposition design mark SPOT_ID
Data table ID CpG_chrm CpG_beg CpG_end probe_strand genesUniq geneNames transcriptTypes transcriptIDs distToTSS CGI CGIposition design mark SPOT_ID cg00101675_BC21
chr12
75515718
75515720
-
Ppp2r5e
Ppp2r5e;Ppp2r5e;Ppp2r5e;Ppp2r5e;Ppp2r5e
protein_coding;protein_coding;protein_coding;protein_coding;protein_coding
ENSMUST00000021447.8;ENSMUST00000218012.1;ENSMUST00000218716.1;ENSMUST00000218930.1;ENSMUST00000220035.1
80482;80527;33956;80510;80527
NA
NA
EPIC;cg00101675
FALSE
cg00101675_BC21
cg00116289_BC21
chr15
12170849
12170851
-
Mir1898;Zfr
Mir1898;Zfr;Zfr;Zfr;Zfr
miRNA;protein_coding;protein_coding;protein_coding;protein_coding
ENSMUST00000122643.1;ENSMUST00000122941.7;ENSMUST00000147492.1;ENSMUST00000156752.1;ENSMUST00000157034.7
-642;53019;574;10309;4691
NA
NA
EPIC;cg00116289
FALSE
cg00116289_BC21
cg00211372_TC21
chrX
57387383
57387385
-
Rbmx
Rbmx;Rbmx;Rbmx;Rbmx;Rbmx
protein_coding;protein_coding;protein_coding;protein_coding;protein_coding
ENSMUST00000098470.8;ENSMUST00000114726.7;ENSMUST00000114730.7;ENSMUST00000140384.7;ENSMUST00000143310.1
5653;5653;5579;5598;5637
NA
NA
EPIC;cg00211372
FALSE
cg00211372_TC21
cg00531009_BC21
chr19
6375936
6375938
+
Sf1
Sf1;Sf1;Sf1;Sf1;Sf1;Sf1;Sf1
protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding
ENSMUST00000113485.8;ENSMUST00000113487.7;ENSMUST00000113488.7;ENSMUST00000113489.7;ENSMUST00000124667.1;ENSMUST00000125516.7;ENSMUST00000131252.7
12015;12015;12127;12218;1927;2316;12247
NA
Shore
EPIC;cg00531009
FALSE
cg00531009_BC21
cg00747726_TC21
chr18
35572741
35572743
-
Matr3;Snhg4
Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Matr3;Snhg4;Snhg4;Snhg4
protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding
ENSMUST00000166793.9;ENSMUST00000235199.1;ENSMUST00000235581.1;ENSMUST00000235769.1;ENSMUST00000235960.1;ENSMUST00000236276.1;ENSMUST00000236327.1;ENSMUST00000236507.1;ENSMUST00000237002.1;ENSMUST00000237018.1;ENSMUST00000237061.1;ENSMUST00000237365.1;ENSMUST00000237744.1;ENSMUST00000235801.1;ENSMUST00000237589.1;ENSMUST00000237592.1
10584;10297;10053;10604;10531;10255;10525;10531;815;10525;10523;10443;10289;19334;19320;19332
NA
NA
EPIC;cg00747726
FALSE
cg00747726_TC21
cg00896209_TC21
chr3
89169679
89169681
-
Clk2
Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2
protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding
ENSMUST00000090927.11;ENSMUST00000121212.8;ENSMUST00000121931.7;ENSMUST00000128318.7;ENSMUST00000133323.1;ENSMUST00000138822.7;ENSMUST00000148265.7
4862;4885;4840;4701;2516;4861;4861
CGI:chr3:89169426-89169681
Island
CGI;chr3:89169426-89169681
FALSE
cg00896209_TC21
cg00910419_BC21
chr11
24078067
24078069
+
Bcl11a
Bcl11a;Bcl11a;Bcl11a;Bcl11a
protein_coding;protein_coding;protein_coding;protein_coding
ENSMUST00000000881.12;ENSMUST00000109514.7;ENSMUST00000109516.7;ENSMUST00000124148.1
12;-105;-49;-79
NA
Shore
TSS;chr11:24078055;Bcl11a;ENSMUST00000000881;+12;1,TSS;chr11:24078116;Bcl11a;ENSMUST00000109516;-49;1,TSS;chr11:24078172;Bcl11a;ENSMUST00000109514;-105;1
FALSE
cg00910419_BC21
cg00920372_BC21
chr19
45330081
45330083
+
Gm28578
Gm28578;Gm28578;Gm28578;Gm28578;Gm28578;Gm28578
lincRNA;lincRNA;lincRNA;lincRNA;lincRNA;lincRNA
ENSMUST00000186981.2;ENSMUST00000187795.1;ENSMUST00000189196.1;ENSMUST00000189827.2;ENSMUST00000235789.1;ENSMUST00000236436.1
8238;313;8242;8226;8238;8302
NA
NA
EPIC;cg00920372,lincRNATSS;chr19:45330394;Gm28578;ENSMUST00000187795;311
FALSE
cg00920372_BC21
cg01326836_BC21
chr6
52245788
52245790
+
Gm27492;Gm27695;Gm28032;Hoxa11;Hoxa11os
Gm27492;Gm27695;Gm28032;Hoxa11;Hoxa11;Hoxa11os;Hoxa11os;Hoxa11os;Hoxa11os;Hoxa11os
misc_RNA;misc_RNA;misc_RNA;protein_coding;protein_coding;processed_transcript;processed_transcript;processed_transcript;processed_transcript;processed_transcript
ENSMUST00000185194.1;ENSMUST00000184301.1;ENSMUST00000184104.1;ENSMUST00000048026.9;ENSMUST00000131495.1;ENSMUST00000134512.7;ENSMUST00000137729.1;ENSMUST00000141850.1;ENSMUST00000147174.2;ENSMUST00000156515.8
-610;-929;-220;22;7;546;-432;-200;-180;1396
CGI:chr6:52245220-52246577
Island
EPIC;cg01326836,TSS;chr6:52245809;Hoxa11;ENSMUST00000048026;+21;1
FALSE
cg01326836_BC21
cg01340195_BC21
chr17
51048827
51048829
+
Tbc1d5
Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5
protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding
ENSMUST00000024717.9;ENSMUST00000223758.1;ENSMUST00000223979.1;ENSMUST00000224528.1;ENSMUST00000224547.1;ENSMUST00000224977.1;ENSMUST00000225252.1;ENSMUST00000225473.1
130341;130508;130416;130484;130462;110551;130525;130467
NA
NA
EPIC;cg01340195
FALSE
cg01340195_BC21
cg01603043_TC21
chr9
48678575
48678577
-
Zbtb16
Zbtb16;Zbtb16
protein_coding;protein_coding
ENSMUST00000093852.4;ENSMUST00000216150.1
157370;157647
NA
NA
EPIC;cg01603043
FALSE
cg01603043_TC21
cg01613817_BC11
chr16
95459337
95459339
-
Erg
Erg;Erg;Erg;Erg;Erg;Erg;Erg;Erg
protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding
ENSMUST00000113848.10;ENSMUST00000121809.10;ENSMUST00000122199.9;ENSMUST00000171646.9;ENSMUST00000176345.9;ENSMUST00000233269.1;ENSMUST00000233664.1;ENSMUST00000233881.1
71028;-92;11;65266;-92;127256;-34;71028
NA
NA
EPIC;cg01613817,TSS;chr16:95459347;Erg;ENSMUST00000122199;+10;1
FALSE
cg01613817_BC11
cg01683044_BC21
chr15
102998194
102998196
+
Hoxc5;Hoxc6
Hoxc5;Hoxc6
protein_coding;protein_coding
ENSMUST00000174869.1;ENSMUST00000173210.1
30752;-62
NA
NA
EPIC;cg01683044
FALSE
cg01683044_BC21
cg02153806_BC21
chr6
6869403
6869405
+
Dlx6os1
Dlx6os1
antisense
ENSMUST00000159568.5
2189
NA
NA
EPIC;cg02153806
FALSE
cg02153806_BC21
cg02176373_BC21
chr7
137314239
137314241
+
Ebf3
Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3
protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding
ENSMUST00000033378.12;ENSMUST00000106118.9;ENSMUST00000168203.1;ENSMUST00000169486.8;ENSMUST00000209864.1;ENSMUST00000210774.1
206;175;175;206;-323;-253
CGI:chr7:137313128-137315593
Island
TSS;chr7:137313985;Ebf3;ENSMUST00000210774;-254;1,TSS;chr7:137314413;Ebf3;ENSMUST00000106118-ENSMUST00000168203;+174;1,TSS;chr7:137314444;Ebf3;ENSMUST00000033378-ENSMUST00000169486;+205;1
FALSE
cg02176373_BC21
cg02187860_TC21
chr2
33941648
33941650
+
Gm13403
Gm13403;Gm13403
lincRNA;lincRNA
ENSMUST00000127936.1;ENSMUST00000134271.1
465;497
NA
NA
EPIC;cg02187860
FALSE
cg02187860_TC21
cg02245762_BC11
chr1
178329298
178329300
-
Hnrnpu
Hnrnpu;Hnrnpu;Hnrnpu;Hnrnpu;Hnrnpu
protein_coding;protein_coding;protein_coding;protein_coding;protein_coding
ENSMUST00000037748.8;ENSMUST00000161769.7;ENSMUST00000162916.1;ENSMUST00000188044.6;ENSMUST00000189450.1
8499;8430;1022;1323;109
NA
NA
Random
FALSE
cg02245762_BC11
cg02258130_TC21
chr11
51273003
51273005
+
Clk4
Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4;Clk4
protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding
ENSMUST00000093132.12;ENSMUST00000109111.1;ENSMUST00000109113.7;ENSMUST00000126131.7;ENSMUST00000130641.7;ENSMUST00000140628.1;ENSMUST00000148053.1;ENSMUST00000148467.7
9890;-447;9818;9854;11274;-608;9835;1005
NA
NA
EPIC;cg02258130
FALSE
cg02258130_TC21
cg02380775_BC21
chr6
113109926
113109928
-
Setd5
Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5;Setd5
protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding;protein_coding
ENSMUST00000042889.11;ENSMUST00000113155.1;ENSMUST00000113157.7;ENSMUST00000124467.7;ENSMUST00000125003.7;ENSMUST00000138327.1;ENSMUST00000149584.7;ENSMUST00000153513.7;ENSMUST00000204377.1
32562;4890;32288;1054;32325;-490;62;4992;-490
NA
NA
EPIC;cg02380775
FALSE
cg02380775_BC21
cg02529685_TC11
chr3
5242408
5242410
+
Zfhx4
Zfhx4;Zfhx4;Zfhx4;Zfhx4
protein_coding;protein_coding;protein_coding;protein_coding
ENSMUST00000026284.12;ENSMUST00000175641.1;ENSMUST00000175866.7;ENSMUST00000176383.2
23855;23863;23883;737
NA
NA
EPIC;cg02529685
FALSE
cg02529685_TC11
293199 78002 Kbytes .Supplementary data files not provided
Less...
More...