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GEO accession:
Series GSE33634
Query DataSets for GSE33634
Status
Public on Jun 04, 2013
Title
Topoisomerase II inhibitors and histone eviction
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Expression profiling by array
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
23715267
Submission date
Nov 11, 2011
Last update date
May 15, 2019
Contact name
Baoxu Pang
Organization name
Stanford University
Department
Genetics
Lab
Michael Snyder
Street address
3165 Porter Drive
City
Palo Alto
State/province
CALIFORNIA
ZIP/Postal code
94304
Country
USA
Platforms (6)
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GPL6884
Illumina HumanWG-6 v3.0 expression beadchip
GPL6887
Illumina MouseWG-6 v2.0 expression beadchip
GPL10999
Illumina Genome Analyzer IIx (Homo sapiens)
GPL11154
Illumina HiSeq 2000 (Homo sapiens)
GPL13112
Illumina HiSeq 2000 (Mus musculus)
GPL13376
Illumina HumanWG-6 v2.0 expression beadchip
Samples (62)
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GSM831599
MelJuSo cells un-treated
GSM831600
MelJuSo cells 1 day post doxorubicin rep 1
GSM831601
MelJuSo cells 1 day post doxorubicin rep 2
GSM831602
MelJuSo cells 1 day post etoposide rep 1
GSM831604
MelJuSo cells 1 day post etoposide rep 2
GSM831605
MelJuSo cells 2 days post doxorubicin
GSM831606
MelJuSo cells 2 days post etoposide
GSM831607
MelJuSo cells 6 days post doxorubicin
GSM831608
MelJuSo cells 6 days post etoposide
GSM831610
SW620 cells un-treated
GSM831611
SW620 cells 1 day post doxorubicin
GSM831612
SW620 cells 1 day post etoposide
GSM831613
SW620 cells 6 days post doxorubicin
GSM831614
SW620 cells 6 days post etoposide
GSM831670
MelJuSo cells un-treated
GSM831671
MelJuSo cells 1 day post aclarubicin
GSM831672
MelJuSo cells 1 day post doxorubicin
GSM831673
MelJuSo cells 1 day post etoposide + aclarubicin
GSM831674
Heart un-treated rep 1
GSM831675
Heart un-treated rep 2
GSM831676
Heart 1 day post doxorubicin rep 1
GSM831677
Heart 1 day post doxorubicin rep 2
GSM831678
Heart 6 days post doxorubicin rep 1
GSM831679
Heart 6 days post doxorubicin rep 2
GSM831680
Heart 1 day post etoposide rep 1
GSM831681
Heart 1 day post etoposide rep 2
GSM831682
Heart 6 days post etoposide rep 1
GSM831683
Heart 6 days post etoposide rep 2
GSM831684
Liver un-treated rep 1
GSM831685
Liver un-treated rep 2
GSM831686
Liver 1 day post doxorubicin rep 1
GSM831687
Liver 1 day post doxorubicin rep 2
GSM831688
Liver 6 days post doxorubicin rep 1
GSM831689
Liver 6 days post doxorubicin rep 2
GSM831690
Liver 1 day post etoposide rep 1
GSM831691
Liver 1 day post etoposide rep 2
GSM831692
Liver 6 days post etoposide rep 1
GSM831693
Liver 6 days post etoposide rep 2
GSM831860
SW620 un-treated FAIRE-seq
GSM831861
SW620 aclarubicin FAIRE-seq
GSM831862
SW620 doxorubicin FAIRE-seq
GSM831863
SW620 etoposide FAIRE-seq
GSM831867
MelJuSo un-treated FAIRE-seq
GSM831868
MelJuSo aclarubicin FAIRE-seq
GSM831869
MelJuSo doxorubicin FAIRE-seq
GSM831870
MelJuSo etoposide FAIRE-seq
GSM831874
MelJuSo un-treated H3K4me3 ChIP-seq
GSM831875
MelJuSo doxorubicin H3K4me3 ChIP-seq
GSM831876
MelJuSo etoposide H3K4me3 ChIP-seq
GSM953075
Mouse heart un-treated FAIRE-seq
GSM953076
Mouse heart doxorubicin FAIRE-seq
GSM953077
Mouse heart etoposide FAIRE-seq
GSM1128430
Lung un-treated rep 1
GSM1128431
Lung un-treated rep 2
GSM1128432
Lung 1 day post doxorubicin rep 1
GSM1128433
Lung 1 day post doxorubicin rep 2
GSM1128434
Lung 6 days post doxorubicin rep 1
GSM1128435
Lung 6 days post doxorubicin rep 2
GSM1128436
Lung 1 day post etoposide rep 1
GSM1128437
Lung 1 day post etoposide rep 2
GSM1128438
Lung 6 days post etoposide rep 1
GSM1128439
Lung 6 days post etoposide rep 2
This SuperSeries is composed of the following SubSeries:
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More...
GSE33624
Distinct effects of topoisomerase II inhibitors on tumor cell lines (part 1)
GSE33625
Distinct effects of topoisomerase II inhibitors on tumor cell lines (part 2)
GSE33626
Tissue selective effects of topoisomerase II inhibitors in vivo
GSE33632
Genome-wide analysis of histone eviction by FAIRE-Seq
GSE33633
Epigenetic changes due to histone eviction induced by anthracycline doxorubicin and aclarubicin
Relations
BioProject
PRJNA148617
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Format
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Supplementary file
Size
Download
File type/resource
GSE33634_RAW.tar
7.1 Gb
(http)
(custom)
TAR (of BAM, BED)
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