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Series GSE9222 Query DataSets for GSE9222
Status Public on Dec 20, 2007
Title Structural Variation of Chromosomes in Autism Spectrum Disorder.
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
SNP genotyping by SNP array
Summary Chromosomal abnormalities have been identified in some individuals with Autism Spectrum Disorder (ASD), but their full etiologic role is unknown. Submicroscopic copy number variation (CNV) represents a considerable source of genetic variation in the human genome that contributes to phenotypic differences and disease susceptibility.
To explore the contribution CNV imbalances in ASD, we genotyped unrelated ASD index cases using the Affymetrix GeneChip® 500K single nucleotide polymorphism (SNP) mapping array.
Keywords: Whole Genome Mapping SNP Genotyping Array
 
Overall design DNA derived from blood or lymphopblasts was hybridized to Affymetrix GeneChip® 500K mapping arrays. In total, 426 unrelated probands were analyzed along with 232 parents (116 trios). NspI and StyI arrays were analyzed for CNV using a combination of DNA Chip Analyzer (dChip), Copy Number Analysis for GeneChip (CNAG), and Genotyping Microarray based CNV Analysis (GEMCA).
 
Contributor(s) Scherer SW, Marshall CR
Citation(s) 18252227
Submission date Oct 03, 2007
Last update date May 17, 2017
Contact name Christian R. Marshall
URL http://www.tcag.ca/
Organization name The Hospital for Sick Children
Department Genetics & Genome Biology
Street address 101 College St.
City Toronto
State/province ON
ZIP/Postal code M5G 1L7
Country Canada
 
Platforms (4)
GPL3718 [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array
GPL3720 [Mapping250K_Sty] Affymetrix Mapping 250K Sty2 SNP Array
GPL3811 Affymetrix GeneChip Early Access Mapping 500K Set Array (250K_Nsp_SNP)
Samples (1318)
GSM233256 MM0003-003_NspI
GSM233257 MM0003-003_StyI
GSM233258 MM0004-004_NspI
Relations
BioProject PRJNA102819

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE9222_GSM233256_GSM233305_RAW.tar 1.4 Gb (ftp)(http) TAR
GSE9222_GSM233306_GSM233355_RAW.tar 1.4 Gb (ftp)(http) TAR
GSE9222_GSM233356_GSM233405_RAW.tar 1.4 Gb (ftp)(http) TAR
GSE9222_GSM233406_GSM233455_RAW.tar 1.3 Gb (ftp)(http) TAR
GSE9222_GSM233456_GSM233505_RAW.tar 1.4 Gb (ftp)(http) TAR
GSE9222_GSM233506_GSM233555_RAW.tar 1.4 Gb (ftp)(http) TAR
GSE9222_GSM233556_GSM233605_RAW.tar 1.4 Gb (ftp)(http) TAR
GSE9222_GSM233606_GSM233655_RAW.tar 1.4 Gb (ftp)(http) TAR
GSE9222_GSM233656_GSM233705_RAW.tar 1.4 Gb (ftp)(http) TAR
GSE9222_GSM233706_GSM233755_RAW.tar 1.4 Gb (ftp)(http) TAR
GSE9222_GSM233756_GSM233805_RAW.tar 1.4 Gb (ftp)(http) TAR
GSE9222_GSM233806_GSM233855_RAW.tar 1.4 Gb (ftp)(http) TAR
GSE9222_GSM233856_GSM233905_RAW.tar 1.4 Gb (ftp)(http) TAR
GSE9222_GSM233906_GSM233955_RAW.tar 1.4 Gb (ftp)(http) TAR
GSE9222_GSM233956_GSM234005_RAW.tar 1.4 Gb (ftp)(http) TAR
GSE9222_GSM234006_GSM234055_RAW.tar 1.4 Gb (ftp)(http) TAR
GSE9222_GSM234056_GSM234105_RAW.tar 1.4 Gb (ftp)(http) TAR
GSE9222_GSM234106_GSM234155_RAW.tar 1.4 Gb (ftp)(http) TAR
GSE9222_GSM234156_GSM234205_RAW.tar 1.4 Gb (ftp)(http) TAR
GSE9222_GSM234206_GSM234255_RAW.tar 1.3 Gb (ftp)(http) TAR
GSE9222_GSM234256_GSM234305_RAW.tar 1.4 Gb (ftp)(http) TAR
GSE9222_GSM234306_GSM234355_RAW.tar 1.4 Gb (ftp)(http) TAR
GSE9222_GSM234356_GSM234405_RAW.tar 1.4 Gb (ftp)(http) TAR
GSE9222_GSM234406_GSM234455_RAW.tar 1.4 Gb (ftp)(http) TAR
GSE9222_GSM234456_GSM234505_RAW.tar 1.4 Gb (ftp)(http) TAR
GSE9222_GSM234506_GSM234555_RAW.tar 1.4 Gb (ftp)(http) TAR
GSE9222_GSM234556_GSM252020_RAW.tar 517.8 Mb (ftp)(http) TAR
GSE9222_RAW.tar 36.2 Gb (http)(custom) TAR (of CEL, CHP)
GSE9222_README.txt 1.0 Kb (ftp)(http) TXT
Processed data included within Sample table
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