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Sample GSM9217 Query DataSets for GSM9217
Status Public on Oct 30, 2003
Title whole-genome 1-3 L+
Sample type RNA
 
Source name Ecotype Columbia, Light grown 7-day old seedlings
Organism Arabidopsis thaliana
Extracted molecule total RNA
 
Description Total RNA was isolated from seedlings with the TRIzol reagent procedure of Invitrogen, then poly(A)+ RNA was purified with Qiagen oligotex. One microgram poly(A)+ RNA was converted into ds-cDNA using T7-oligo(dT) primers. Biotin-labeled cRNA was generated by in vitro transcription reactions using ENZO labeling kit, fragmented and then 20 micrograms of fragmented cRNA were hybridized to the arrays according to Affymetrix instructions.
 
Submission date Aug 21, 2003
Last update date May 28, 2005
Contact name Atsunari Tsuchisaka
E-mail(s) guixiay@yahoo.com, atsunaritsuchisaka@gmail.com
Phone 510-559-5924
Organization name University of California, Berkeley / USDA
Department Plant Gene Expression Center
Street address 800 Buchanan St.
City Albany
State/province CA
ZIP/Postal code 94710
Country USA
 
Platform ID GPL434
Series (5)
GSE605 Identification of new full length Arabidopsis genes - whole genome arrays
GSE636 Expression of Annotated Genes
GSE637 Antisense Expression of Annotated Genes

Data table header descriptions
ID_REF
SIGNAL_MEAN Mean signal intensity of the cell
SIGNAL_SD Standard deviation of signal intensity of the cell
SIGNAL_AREA Number of pixels used to calculate mean signal intensity
VALUE Same as SIGNAL_MEAN

Data table
ID_REF SIGNAL_MEAN SIGNAL_SD SIGNAL_AREA VALUE
1 11809.3 2114.4 16 11809.3
2 391.8 294.4 12 391.8
3 11237.8 2017.7 16 11237.8
4 337.5 247.1 12 337.5
5 195.3 38.9 16 195.3
6 9795.0 1771.5 16 9795.0
7 234.8 26.3 12 234.8
8 8339.0 1315.4 16 8339.0
9 210.3 23.7 12 210.3
10 9157.8 1514.3 16 9157.8
11 277.8 32.0 16 277.8
12 10922.0 1162.9 12 10922.0
13 335.3 95.7 16 335.3
14 11267.3 1121.7 12 11267.3
15 287.0 24.5 16 287.0
16 11257.8 1365.7 16 11257.8
17 335.0 50.2 9 335.0
18 11817.0 1202.3 12 11817.0
19 339.0 42.5 9 339.0
20 11423.8 1205.3 12 11423.8

Total number of rows: 835396

Table truncated, full table size 21082 Kbytes.




Supplementary data files not provided
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