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Represents ASN.1 type Blast4-simple-alignment defined in file blast.asn

Search Toolkit Book for CBlast4_simple_alignment

CBlast4_simple_alignment –. More...

#include <objects/blast/Blast4_simple_alignment.hpp>

+ Inheritance diagram for CBlast4_simple_alignment:
+ Collaboration diagram for CBlast4_simple_alignment:

Public Member Functions

 CBlast4_simple_alignment (void)
 
 ~CBlast4_simple_alignment (void)
 
- Public Member Functions inherited from CBlast4_simple_alignment_Base
 CBlast4_simple_alignment_Base (void)
 
virtual ~CBlast4_simple_alignment_Base (void)
 
 DECLARE_INTERNAL_TYPE_INFO ()
 
bool IsSetSubject_id (void) const
 Subject sequence identifier (normally a GI from the SeqAlign) Check if a value has been assigned to Subject_id data member. More...
 
bool CanGetSubject_id (void) const
 Check if it is safe to call GetSubject_id method. More...
 
void ResetSubject_id (void)
 Reset Subject_id data member. More...
 
const TSubject_idGetSubject_id (void) const
 Get the Subject_id member data. More...
 
void SetSubject_id (const TSubject_id &value)
 Assign a value to Subject_id data member. More...
 
void SetSubject_id (TSubject_id &&value)
 
TSubject_idSetSubject_id (void)
 Assign a value to Subject_id data member. More...
 
bool IsSetE_value (void) const
 E-Value Check if a value has been assigned to E_value data member. More...
 
bool CanGetE_value (void) const
 Check if it is safe to call GetE_value method. More...
 
void ResetE_value (void)
 Reset E_value data member. More...
 
TE_value GetE_value (void) const
 Get the E_value member data. More...
 
void SetE_value (TE_value value)
 Assign a value to E_value data member. More...
 
TE_valueSetE_value (void)
 Assign a value to E_value data member. More...
 
bool IsSetBit_score (void) const
 Bit score Check if a value has been assigned to Bit_score data member. More...
 
bool CanGetBit_score (void) const
 Check if it is safe to call GetBit_score method. More...
 
void ResetBit_score (void)
 Reset Bit_score data member. More...
 
TBit_score GetBit_score (void) const
 Get the Bit_score member data. More...
 
void SetBit_score (TBit_score value)
 Assign a value to Bit_score data member. More...
 
TBit_scoreSetBit_score (void)
 Assign a value to Bit_score data member. More...
 
bool IsSetNum_identities (void) const
 Number of identities Check if a value has been assigned to Num_identities data member. More...
 
bool CanGetNum_identities (void) const
 Check if it is safe to call GetNum_identities method. More...
 
void ResetNum_identities (void)
 Reset Num_identities data member. More...
 
TNum_identities GetNum_identities (void) const
 Get the Num_identities member data. More...
 
void SetNum_identities (TNum_identities value)
 Assign a value to Num_identities data member. More...
 
TNum_identitiesSetNum_identities (void)
 Assign a value to Num_identities data member. More...
 
bool IsSetNum_indels (void) const
 Number of insertions/deletions Check if a value has been assigned to Num_indels data member. More...
 
bool CanGetNum_indels (void) const
 Check if it is safe to call GetNum_indels method. More...
 
void ResetNum_indels (void)
 Reset Num_indels data member. More...
 
TNum_indels GetNum_indels (void) const
 Get the Num_indels member data. More...
 
void SetNum_indels (TNum_indels value)
 Assign a value to Num_indels data member. More...
 
TNum_indelsSetNum_indels (void)
 Assign a value to Num_indels data member. More...
 
bool IsSetFull_query_range (void) const
 Full query range covered by this HSP Check if a value has been assigned to Full_query_range data member. More...
 
bool CanGetFull_query_range (void) const
 Check if it is safe to call GetFull_query_range method. More...
 
void ResetFull_query_range (void)
 Reset Full_query_range data member. More...
 
const TFull_query_rangeGetFull_query_range (void) const
 Get the Full_query_range member data. More...
 
void SetFull_query_range (TFull_query_range &value)
 Assign a value to Full_query_range data member. More...
 
TFull_query_rangeSetFull_query_range (void)
 Assign a value to Full_query_range data member. More...
 
bool IsSetFull_subject_range (void) const
 Full subject range covered by this HSP Check if a value has been assigned to Full_subject_range data member. More...
 
bool CanGetFull_subject_range (void) const
 Check if it is safe to call GetFull_subject_range method. More...
 
void ResetFull_subject_range (void)
 Reset Full_subject_range data member. More...
 
const TFull_subject_rangeGetFull_subject_range (void) const
 Get the Full_subject_range member data. More...
 
void SetFull_subject_range (TFull_subject_range &value)
 Assign a value to Full_subject_range data member. More...
 
TFull_subject_rangeSetFull_subject_range (void)
 Assign a value to Full_subject_range data member. More...
 
virtual void Reset (void)
 Reset the whole object. More...
 
- Public Member Functions inherited from CSerialObject
 CSerialObject (void)
 
virtual ~CSerialObject (void)
 
virtual const CTypeInfoGetThisTypeInfo (void) const =0
 
virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
 Set object to copy of another one. More...
 
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
 Check if both objects contain the same values. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
void ThrowUnassigned (TMemberIndex index) const
 
void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
 
bool HasNamespaceName (void) const
 Check if object data type has namespace name. More...
 
const stringGetNamespaceName (void) const
 Get namespace name. More...
 
bool HasNamespacePrefix (void) const
 Check if data type has namespace prefix. More...
 
const stringGetNamespacePrefix (void) const
 Get namespace prefix. More...
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 

Private Types

typedef CBlast4_simple_alignment_Base Tparent
 

Private Member Functions

 CBlast4_simple_alignment (const CBlast4_simple_alignment &value)
 
CBlast4_simple_alignmentoperator= (const CBlast4_simple_alignment &value)
 

Additional Inherited Members

- Public Types inherited from CBlast4_simple_alignment_Base
enum class  E_memberIndex {
  e__allMandatory = 0 , e_subject_id , e_e_value , e_bit_score ,
  e_num_identities , e_num_indels , e_full_query_range , e_full_subject_range
}
 
typedef string TSubject_id
 
typedef double TE_value
 
typedef double TBit_score
 
typedef int TNum_identities
 
typedef int TNum_indels
 
typedef CBlast4_range TFull_query_range
 
typedef CBlast4_range TFull_subject_range
 
typedef Tparent::CMemberIndex< E_memberIndex, 8 > TmemberIndex
 
- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 
- Static Public Member Functions inherited from CSerialObject
static void SetVerifyDataThread (ESerialVerifyData verify)
 
static void SetVerifyDataGlobal (ESerialVerifyData verify)
 
static string UnassignedString (void)
 
static CStringUTF8 UnassignedStringUTF8 (void)
 
static char UnassignedByte (void)
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 
- Static Public Attributes inherited from CSerialObject
static const char * ms_UnassignedStr = "<*unassigned*>"
 
static const char ms_UnassignedByte = char(0xcd)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

CBlast4_simple_alignment –.

Definition at line 65 of file Blast4_simple_alignment.hpp.


The documentation for this class was generated from the following files:
Modified on Wed Apr 17 13:10:22 2024 by modify_doxy.py rev. 669887