CProSplignPanel Class Reference

Search Toolkit Book for CProSplignPanel

#include <gui/packages/pkg_alignment/prosplign_panel.hpp>

Inheritance diagram for CProSplignPanel:

Collaboration diagram for CProSplignPanel:

Public Member Functions
	CProSplignPanel ()
	CProSplignPanel (wxWindow *parent, wxWindowID id=ID_CPROSPLIGNPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxTAB_TRAVERSAL, bool visible=true)
bool	Create (wxWindow *parent, wxWindowID id=ID_CPROSPLIGNPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxTAB_TRAVERSAL, bool visible=true)
	~CProSplignPanel ()
void	Init ()
void	CreateControls ()
void	OnRefineAlignmentClick (wxCommandEvent &event)
bool	TransferDataFromWindow ()
bool	TransferDataToWindow ()
CProSplignParams &	GetNCData ()
const CProSplignParams &	GetData () const
void	SetData (const CProSplignParams &data)
SConstScopedObject	GetProteinSeq () const
TConstScopedObjects	GetNucleotideSeqs () const
void	SetObjects (map< string, TConstScopedObjects > *protein, map< string, TConstScopedObjects > *nucleotide)
wxBitmap	GetBitmapResource (const wxString &name)
wxIcon	GetIconResource (const wxString &name)
IRegSettings interface implementation
virtual void	SetRegistryPath (const string &path)
	CAlgoToolManagerParamsPanel. More...
virtual void	LoadSettings ()
virtual void	SaveSettings () const
	override in derived classes More...
CAlgoToolManagerParamsPanel implementation
void	RestoreDefaults ()
	override in derived classes More...
IRegSettings interface implementation
Public Member Functions inherited from IRegSettings
virtual	~IRegSettings ()

Static Public Member Functions
static bool	ShowToolTips ()

Private Types
enum	{   ID_CPROSPLIGNPANEL = 10090 , ID_PROSPLIGN_PANEL1 = 10091 , ID_PROSPLIGN_PANEL2 = 10092 , ID_PROSPLIGN_NOTEBOOK = 10093 ,   ID_PROSPLIGN_PANEL3 = 10094 , ID_PROSPLIGN_CHOICE1 = 10095 , ID_PROSPLIGN_CHCKBX1 = 10096 , ID_PROSPLIGN_TXTCTRL1 = 10097 ,   ID_PROSPLIGN_TXTCTRL2 = 10098 , ID_PROSPLIGN_TXTCTRL3 = 10099 , ID_PROSPLIGN_CHOICE2 = 10100 , ID_PROSPLIGN_PANEL4 = 10101 ,   ID_PROSPLIGN_CHCKBX2 = 10102 , ID_PROSPLIGN_CHCKBX3 = 10103 , ID_PROSPLIGN_CHCKBX4 = 10104 , ID_PROSPLIGN_TXTCTRL4 = 10105 ,   ID_PROSPLIGN_TXTCTRL5 = 10106 , ID_PROSPLIGN_TXTCTRL6 = 10107 , ID_PROSPLIGN_TXTCTRL7 = 10108 , ID_PROSPLIGN_TXTCTRL8 = 10109 ,   ID_PROSPLIGN_TXTCTRL9 = 10110 }

Private Member Functions
void	x_ListGeneticCodes ()
void	x_EnableRefinementOptions (bool enable)

Private Attributes
CObjectListWidgetSel *	m_ProteinList
CObjectListWidgetSel *	m_NucleotideList
SConstScopedObject	m_ProteinSeq
TConstScopedObjects	m_NucleotideSeqs
CProSplignParams	m_Data
string	m_RegPath
CMolTypeValidator	m_ProteinListAccValidator
CMolTypeValidator	m_NucleotideListAccValidator
wxString	m_FrameshiftCostStr
wxString	m_GapOpenCostStr
wxString	m_GapExtendCostStr
long	m_TotalPosL
long	m_FlankPosL
long	m_MinGoodLenL
long	m_MinExonIdentL
long	m_MinExonPosL
long	m_MinFlankExonLenL

Additional Inherited Members
Protected Attributes inherited from CAlgoToolManagerParamsPanel
string	m_RegPath
	registry path to the settings More...

Detailed Description

CProSplignPanel class declaration

Definition at line 62 of file prosplign_panel.hpp.

Member Enumeration Documentation

anonymous enum

anonymous enum

private

Enumerator
ID_CPROSPLIGNPANEL
ID_PROSPLIGN_PANEL1
ID_PROSPLIGN_PANEL2
ID_PROSPLIGN_NOTEBOOK
ID_PROSPLIGN_PANEL3
ID_PROSPLIGN_CHOICE1
ID_PROSPLIGN_CHCKBX1
ID_PROSPLIGN_TXTCTRL1
ID_PROSPLIGN_TXTCTRL2
ID_PROSPLIGN_TXTCTRL3
ID_PROSPLIGN_CHOICE2
ID_PROSPLIGN_PANEL4
ID_PROSPLIGN_CHCKBX2
ID_PROSPLIGN_CHCKBX3
ID_PROSPLIGN_CHCKBX4
ID_PROSPLIGN_TXTCTRL4
ID_PROSPLIGN_TXTCTRL5
ID_PROSPLIGN_TXTCTRL6
ID_PROSPLIGN_TXTCTRL7
ID_PROSPLIGN_TXTCTRL8
ID_PROSPLIGN_TXTCTRL9

Definition at line 136 of file prosplign_panel.hpp.

Constructor & Destructor Documentation

CProSplignPanel() [1/2]

CProSplignPanel::CProSplignPanel

(

)

Definition at line 66 of file prosplign_panel.cpp.

References Init().

CProSplignPanel() [2/2]

CProSplignPanel::CProSplignPanel	(	wxWindow *	parent,
		wxWindowID	id = ID_CPROSPLIGNPANEL,
		const wxPoint &	pos = wxDefaultPosition,
		const wxSize &	size = wxSize(400, 300),
		long	style = wxTAB_TRAVERSAL,
		bool	visible = true
	)

Definition at line 73 of file prosplign_panel.cpp.

References Create(), Init(), and ncbi::grid::netcache::search::fields::size.

~CProSplignPanel()

CProSplignPanel::~CProSplignPanel

(

)

Definition at line 101 of file prosplign_panel.cpp.

Member Function Documentation

Create()

bool CProSplignPanel::Create	(	wxWindow *	parent,
		wxWindowID	id = ID_CPROSPLIGNPANEL,
		const wxPoint &	pos = wxDefaultPosition,
		const wxSize &	size = wxSize(400, 300),
		long	style = wxTAB_TRAVERSAL,
		bool	visible = true
	)

Definition at line 81 of file prosplign_panel.cpp.

References CreateControls(), and ncbi::grid::netcache::search::fields::size.

Referenced by CProSplignPanel().

CreateControls()

void CProSplignPanel::CreateControls

(

)

Definition at line 122 of file prosplign_panel.cpp.

References _, ID_PROSPLIGN_CHCKBX1, ID_PROSPLIGN_CHCKBX2, ID_PROSPLIGN_CHCKBX3, ID_PROSPLIGN_CHCKBX4, ID_PROSPLIGN_CHOICE1, ID_PROSPLIGN_CHOICE2, ID_PROSPLIGN_NOTEBOOK, ID_PROSPLIGN_PANEL1, ID_PROSPLIGN_PANEL2, ID_PROSPLIGN_PANEL3, ID_PROSPLIGN_PANEL4, ID_PROSPLIGN_TXTCTRL1, ID_PROSPLIGN_TXTCTRL2, ID_PROSPLIGN_TXTCTRL3, ID_PROSPLIGN_TXTCTRL4, ID_PROSPLIGN_TXTCTRL5, ID_PROSPLIGN_TXTCTRL6, ID_PROSPLIGN_TXTCTRL7, ID_PROSPLIGN_TXTCTRL8, ID_PROSPLIGN_TXTCTRL9, m_Data, m_FlankPosL, m_FrameshiftCostStr, m_GapExtendCostStr, m_GapOpenCostStr, CProSplignParams::m_GeneticCode, m_MinExonIdentL, m_MinExonPosL, m_MinFlankExonLenL, m_MinGoodLenL, m_NucleotideList, m_NucleotideListAccValidator, m_ProteinList, m_ProteinListAccValidator, CProSplignParams::m_RefineAlignment, CProSplignParams::m_RemoveFlanks, CProSplignParams::m_RemoveNs, CProSplignParams::m_Strand, m_TotalPosL, CProSplignParams::m_WithIntrons, CObjectListWidgetSel::SetAccessionValidator(), CObjectListWidgetSel::SetTitle(), sGetWarningMsg(), wxT, and x_ListGeneticCodes().

Referenced by Create().

GetBitmapResource()

wxBitmap CProSplignPanel::GetBitmapResource

(

const wxString &

name

)

Definition at line 430 of file prosplign_panel.cpp.

GetData()

const CProSplignParams& CProSplignPanel::GetData ( void  ) const

inline

Definition at line 109 of file prosplign_panel.hpp.

References m_Data.

Referenced by CProSplignTool::x_CreateLoadingJob().

GetIconResource()

wxIcon CProSplignPanel::GetIconResource

(

const wxString &

name

)

Definition at line 438 of file prosplign_panel.cpp.

GetNCData()

CProSplignParams& CProSplignPanel::GetNCData ( )

inline

Definition at line 108 of file prosplign_panel.hpp.

References m_Data.

Referenced by RestoreDefaults().

GetNucleotideSeqs()

TConstScopedObjects CProSplignPanel::GetNucleotideSeqs ( ) const

inline

Definition at line 113 of file prosplign_panel.hpp.

References m_NucleotideSeqs.

Referenced by CProSplignTool::x_CreateLoadingJob().

GetProteinSeq()

SConstScopedObject CProSplignPanel::GetProteinSeq ( ) const

inline

Definition at line 112 of file prosplign_panel.hpp.

References m_ProteinSeq.

Referenced by CProSplignTool::x_CreateLoadingJob().

Init()

void CProSplignPanel::Init

(

void

)

Definition at line 107 of file prosplign_panel.cpp.

References m_NucleotideList, m_ProteinList, and NULL.

Referenced by CProSplignPanel().

LoadSettings()

void CProSplignPanel::LoadSettings ( )

virtual

Implements CAlgoToolManagerParamsPanel.

Definition at line 414 of file prosplign_panel.cpp.

References CObjectListWidgetSel::LoadSettings(), m_NucleotideList, and m_ProteinList.

Referenced by CProSplignTool::x_CreateParamsPanelIfNeeded().

OnRefineAlignmentClick()

void CProSplignPanel::OnRefineAlignmentClick

(

wxCommandEvent &

event

)

Definition at line 334 of file prosplign_panel.cpp.

References x_EnableRefinementOptions().

RestoreDefaults()

void CProSplignPanel::RestoreDefaults ( )

virtual

override in derived classes

Restores the default options for the panel

Implements CAlgoToolManagerParamsPanel.

Definition at line 420 of file prosplign_panel.cpp.

References GetNCData(), CProSplignParams::Init(), and TransferDataToWindow().

SaveSettings()

void CProSplignPanel::SaveSettings ( ) const

virtual

override in derived classes

Implements CAlgoToolManagerParamsPanel.

Definition at line 408 of file prosplign_panel.cpp.

References m_NucleotideList, m_ProteinList, and CObjectListWidgetSel::SaveSettings().

SetData()

void CProSplignPanel::SetData ( const CProSplignParams &  data )

inline

Definition at line 110 of file prosplign_panel.hpp.

References data, and m_Data.

Referenced by CProSplignTool::x_CreateParamsPanelIfNeeded().

SetObjects()

void CProSplignPanel::SetObjects	(	map< string, TConstScopedObjects > *	protein,
		map< string, TConstScopedObjects > *	nucleotide
	)

Definition at line 326 of file prosplign_panel.cpp.

References m_NucleotideList, m_ProteinList, and CObjectListWidgetSel::SetObjects().

Referenced by CProSplignTool::x_CreateParamsPanelIfNeeded().

SetRegistryPath()

void CProSplignPanel::SetRegistryPath ( const string &  reg_path )

virtual

CAlgoToolManagerParamsPanel.

Reimplemented from CAlgoToolManagerParamsPanel.

Definition at line 401 of file prosplign_panel.cpp.

References kNucleotideList, kProteinList, m_NucleotideList, m_ProteinList, m_RegPath, and CObjectListWidgetSel::SetRegistryPath().

Referenced by CProSplignTool::x_CreateParamsPanelIfNeeded().

ShowToolTips()

bool CProSplignPanel::ShowToolTips ( )

static

Definition at line 426 of file prosplign_panel.cpp.

TransferDataFromWindow()

bool CProSplignPanel::TransferDataFromWindow

(

)

Definition at line 373 of file prosplign_panel.cpp.

References CObjectListWidgetSel::GetSelection(), m_Data, CProSplignParams::m_FlankPositives, m_FlankPosL, CProSplignParams::m_FrameshiftCost, m_FrameshiftCostStr, CProSplignParams::m_GapExtendCost, m_GapExtendCostStr, CProSplignParams::m_GapOpenCost, m_GapOpenCostStr, CProSplignParams::m_MinExonIdentity, m_MinExonIdentL, CProSplignParams::m_MinExonPositives, m_MinExonPosL, m_MinFlankExonLenL, CProSplignParams::m_MinFlankingExonLength, CProSplignParams::m_MinGoodLength, m_MinGoodLenL, m_NucleotideList, m_NucleotideSeqs, m_ProteinList, m_ProteinSeq, CProSplignParams::m_TotalPositives, m_TotalPosL, NStr::StringToInt(), and ToStdString().

TransferDataToWindow()

bool CProSplignPanel::TransferDataToWindow

(

)

Definition at line 354 of file prosplign_panel.cpp.

References m_Data, CProSplignParams::m_FlankPositives, m_FlankPosL, CProSplignParams::m_FrameshiftCost, m_FrameshiftCostStr, CProSplignParams::m_GapExtendCost, m_GapExtendCostStr, CProSplignParams::m_GapOpenCost, m_GapOpenCostStr, CProSplignParams::m_MinExonIdentity, m_MinExonIdentL, CProSplignParams::m_MinExonPositives, m_MinExonPosL, m_MinFlankExonLenL, CProSplignParams::m_MinFlankingExonLength, CProSplignParams::m_MinGoodLength, m_MinGoodLenL, CProSplignParams::m_RefineAlignment, CProSplignParams::m_TotalPositives, m_TotalPosL, NStr::NumericToString(), ToWxString(), and x_EnableRefinementOptions().

Referenced by RestoreDefaults().

x_EnableRefinementOptions()

void CProSplignPanel::x_EnableRefinementOptions ( bool  enable )

private

Definition at line 339 of file prosplign_panel.cpp.

References ID_PROSPLIGN_CHCKBX3, ID_PROSPLIGN_CHCKBX4, ID_PROSPLIGN_TXTCTRL4, ID_PROSPLIGN_TXTCTRL5, ID_PROSPLIGN_TXTCTRL6, ID_PROSPLIGN_TXTCTRL7, ID_PROSPLIGN_TXTCTRL8, ID_PROSPLIGN_TXTCTRL9, and val.

Referenced by OnRefineAlignmentClick(), and TransferDataToWindow().

x_ListGeneticCodes()

void CProSplignPanel::x_ListGeneticCodes ( )

private

Definition at line 306 of file prosplign_panel.cpp.

References CBLASTParams::GetGeneticCodeLabels(), ID_PROSPLIGN_CHOICE2, and ToWxString().

Referenced by CreateControls().

Member Data Documentation

m_Data

CProSplignParams CProSplignPanel::m_Data

private

Definition at line 134 of file prosplign_panel.hpp.

Referenced by CreateControls(), GetData(), GetNCData(), SetData(), TransferDataFromWindow(), and TransferDataToWindow().

m_FlankPosL

long CProSplignPanel::m_FlankPosL

private

Definition at line 170 of file prosplign_panel.hpp.

Referenced by CreateControls(), TransferDataFromWindow(), and TransferDataToWindow().

m_FrameshiftCostStr

wxString CProSplignPanel::m_FrameshiftCostStr

private

Definition at line 165 of file prosplign_panel.hpp.

Referenced by CreateControls(), TransferDataFromWindow(), and TransferDataToWindow().

m_GapExtendCostStr

wxString CProSplignPanel::m_GapExtendCostStr

private

Definition at line 167 of file prosplign_panel.hpp.

Referenced by CreateControls(), TransferDataFromWindow(), and TransferDataToWindow().

m_GapOpenCostStr

wxString CProSplignPanel::m_GapOpenCostStr

private

Definition at line 166 of file prosplign_panel.hpp.

Referenced by CreateControls(), TransferDataFromWindow(), and TransferDataToWindow().

m_MinExonIdentL

long CProSplignPanel::m_MinExonIdentL

private

Definition at line 172 of file prosplign_panel.hpp.

Referenced by CreateControls(), TransferDataFromWindow(), and TransferDataToWindow().

m_MinExonPosL

long CProSplignPanel::m_MinExonPosL

private

Definition at line 173 of file prosplign_panel.hpp.

Referenced by CreateControls(), TransferDataFromWindow(), and TransferDataToWindow().

m_MinFlankExonLenL

long CProSplignPanel::m_MinFlankExonLenL

private

Definition at line 174 of file prosplign_panel.hpp.

Referenced by CreateControls(), TransferDataFromWindow(), and TransferDataToWindow().

m_MinGoodLenL

long CProSplignPanel::m_MinGoodLenL

private

Definition at line 171 of file prosplign_panel.hpp.

Referenced by CreateControls(), TransferDataFromWindow(), and TransferDataToWindow().

m_NucleotideList

CObjectListWidgetSel* CProSplignPanel::m_NucleotideList

private

Definition at line 130 of file prosplign_panel.hpp.

Referenced by CreateControls(), Init(), LoadSettings(), SaveSettings(), SetObjects(), SetRegistryPath(), and TransferDataFromWindow().

m_NucleotideListAccValidator

CMolTypeValidator CProSplignPanel::m_NucleotideListAccValidator

private

Definition at line 163 of file prosplign_panel.hpp.

Referenced by CreateControls().

m_NucleotideSeqs

TConstScopedObjects CProSplignPanel::m_NucleotideSeqs

private

Definition at line 133 of file prosplign_panel.hpp.

Referenced by GetNucleotideSeqs(), and TransferDataFromWindow().

m_ProteinList

CObjectListWidgetSel* CProSplignPanel::m_ProteinList

private

Definition at line 129 of file prosplign_panel.hpp.

Referenced by CreateControls(), Init(), LoadSettings(), SaveSettings(), SetObjects(), SetRegistryPath(), and TransferDataFromWindow().

m_ProteinListAccValidator

CMolTypeValidator CProSplignPanel::m_ProteinListAccValidator

private

Definition at line 162 of file prosplign_panel.hpp.

Referenced by CreateControls().

m_ProteinSeq

SConstScopedObject CProSplignPanel::m_ProteinSeq

private

Definition at line 132 of file prosplign_panel.hpp.

Referenced by GetProteinSeq(), and TransferDataFromWindow().

m_RegPath

string CProSplignPanel::m_RegPath

private

Definition at line 160 of file prosplign_panel.hpp.

Referenced by SetRegistryPath().

m_TotalPosL

long CProSplignPanel::m_TotalPosL

private

Definition at line 169 of file prosplign_panel.hpp.

Referenced by CreateControls(), TransferDataFromWindow(), and TransferDataToWindow().

---

The documentation for this class was generated from the following files:

• include/gui/packages/pkg_alignment/prosplign_panel.hpp
• src/gui/packages/pkg_alignment/prosplign_panel.cpp