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| CStatistics_Base (void) |
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virtual | ~CStatistics_Base (void) |
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| DECLARE_INTERNAL_TYPE_INFO () |
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bool | IsSetDb_num (void) const |
| Number of sequences in BLAST db Check if a value has been assigned to Db_num data member. More...
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bool | CanGetDb_num (void) const |
| Check if it is safe to call GetDb_num method. More...
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void | ResetDb_num (void) |
| Reset Db_num data member. More...
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TDb_num | GetDb_num (void) const |
| Get the Db_num member data. More...
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void | SetDb_num (TDb_num value) |
| Assign a value to Db_num data member. More...
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TDb_num & | SetDb_num (void) |
| Assign a value to Db_num data member. More...
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bool | IsSetDb_len (void) const |
| Length of BLAST db Check if a value has been assigned to Db_len data member. More...
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bool | CanGetDb_len (void) const |
| Check if it is safe to call GetDb_len method. More...
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void | ResetDb_len (void) |
| Reset Db_len data member. More...
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TDb_len | GetDb_len (void) const |
| Get the Db_len member data. More...
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void | SetDb_len (TDb_len value) |
| Assign a value to Db_len data member. More...
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TDb_len & | SetDb_len (void) |
| Assign a value to Db_len data member. More...
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bool | IsSetHsp_len (void) const |
| Effective HSP length Check if a value has been assigned to Hsp_len data member. More...
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bool | CanGetHsp_len (void) const |
| Check if it is safe to call GetHsp_len method. More...
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void | ResetHsp_len (void) |
| Reset Hsp_len data member. More...
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THsp_len | GetHsp_len (void) const |
| Get the Hsp_len member data. More...
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void | SetHsp_len (THsp_len value) |
| Assign a value to Hsp_len data member. More...
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THsp_len & | SetHsp_len (void) |
| Assign a value to Hsp_len data member. More...
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bool | IsSetEff_space (void) const |
| Effective search space Check if a value has been assigned to Eff_space data member. More...
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bool | CanGetEff_space (void) const |
| Check if it is safe to call GetEff_space method. More...
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void | ResetEff_space (void) |
| Reset Eff_space data member. More...
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TEff_space | GetEff_space (void) const |
| Get the Eff_space member data. More...
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void | SetEff_space (TEff_space value) |
| Assign a value to Eff_space data member. More...
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TEff_space & | SetEff_space (void) |
| Assign a value to Eff_space data member. More...
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bool | IsSetKappa (void) const |
| Karlin-Altschul parameter K Check if a value has been assigned to Kappa data member. More...
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bool | CanGetKappa (void) const |
| Check if it is safe to call GetKappa method. More...
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void | ResetKappa (void) |
| Reset Kappa data member. More...
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TKappa | GetKappa (void) const |
| Get the Kappa member data. More...
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void | SetKappa (TKappa value) |
| Assign a value to Kappa data member. More...
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TKappa & | SetKappa (void) |
| Assign a value to Kappa data member. More...
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bool | IsSetLambda (void) const |
| Karlin-Altschul parameter Lambda Check if a value has been assigned to Lambda data member. More...
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bool | CanGetLambda (void) const |
| Check if it is safe to call GetLambda method. More...
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void | ResetLambda (void) |
| Reset Lambda data member. More...
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TLambda | GetLambda (void) const |
| Get the Lambda member data. More...
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void | SetLambda (TLambda value) |
| Assign a value to Lambda data member. More...
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TLambda & | SetLambda (void) |
| Assign a value to Lambda data member. More...
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bool | IsSetEntropy (void) const |
| Karlin-Altschul parameter H Check if a value has been assigned to Entropy data member. More...
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bool | CanGetEntropy (void) const |
| Check if it is safe to call GetEntropy method. More...
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void | ResetEntropy (void) |
| Reset Entropy data member. More...
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TEntropy | GetEntropy (void) const |
| Get the Entropy member data. More...
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void | SetEntropy (TEntropy value) |
| Assign a value to Entropy data member. More...
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TEntropy & | SetEntropy (void) |
| Assign a value to Entropy data member. More...
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virtual void | Reset (void) |
| Reset the whole object. More...
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| CStatistics_Base (void) |
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virtual | ~CStatistics_Base (void) |
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| DECLARE_INTERNAL_TYPE_INFO () |
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bool | IsSetDb_num (void) const |
| Number of sequences in BLAST db Check if a value has been assigned to Db_num data member. More...
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bool | CanGetDb_num (void) const |
| Check if it is safe to call GetDb_num method. More...
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void | ResetDb_num (void) |
| Reset Db_num data member. More...
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TDb_num | GetDb_num (void) const |
| Get the Db_num member data. More...
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void | SetDb_num (TDb_num value) |
| Assign a value to Db_num data member. More...
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TDb_num & | SetDb_num (void) |
| Assign a value to Db_num data member. More...
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bool | IsSetDb_len (void) const |
| Length of BLAST db Check if a value has been assigned to Db_len data member. More...
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bool | CanGetDb_len (void) const |
| Check if it is safe to call GetDb_len method. More...
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void | ResetDb_len (void) |
| Reset Db_len data member. More...
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TDb_len | GetDb_len (void) const |
| Get the Db_len member data. More...
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void | SetDb_len (TDb_len value) |
| Assign a value to Db_len data member. More...
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TDb_len & | SetDb_len (void) |
| Assign a value to Db_len data member. More...
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bool | IsSetHsp_len (void) const |
| Effective HSP length Check if a value has been assigned to Hsp_len data member. More...
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bool | CanGetHsp_len (void) const |
| Check if it is safe to call GetHsp_len method. More...
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void | ResetHsp_len (void) |
| Reset Hsp_len data member. More...
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THsp_len | GetHsp_len (void) const |
| Get the Hsp_len member data. More...
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void | SetHsp_len (THsp_len value) |
| Assign a value to Hsp_len data member. More...
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THsp_len & | SetHsp_len (void) |
| Assign a value to Hsp_len data member. More...
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bool | IsSetEff_space (void) const |
| Effective search space Check if a value has been assigned to Eff_space data member. More...
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bool | CanGetEff_space (void) const |
| Check if it is safe to call GetEff_space method. More...
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void | ResetEff_space (void) |
| Reset Eff_space data member. More...
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TEff_space | GetEff_space (void) const |
| Get the Eff_space member data. More...
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void | SetEff_space (TEff_space value) |
| Assign a value to Eff_space data member. More...
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TEff_space & | SetEff_space (void) |
| Assign a value to Eff_space data member. More...
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bool | IsSetKappa (void) const |
| Karlin-Altschul parameter K Check if a value has been assigned to Kappa data member. More...
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bool | CanGetKappa (void) const |
| Check if it is safe to call GetKappa method. More...
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void | ResetKappa (void) |
| Reset Kappa data member. More...
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TKappa | GetKappa (void) const |
| Get the Kappa member data. More...
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void | SetKappa (TKappa value) |
| Assign a value to Kappa data member. More...
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TKappa & | SetKappa (void) |
| Assign a value to Kappa data member. More...
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bool | IsSetLambda (void) const |
| Karlin-Altschul parameter Lambda Check if a value has been assigned to Lambda data member. More...
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bool | CanGetLambda (void) const |
| Check if it is safe to call GetLambda method. More...
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void | ResetLambda (void) |
| Reset Lambda data member. More...
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TLambda | GetLambda (void) const |
| Get the Lambda member data. More...
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void | SetLambda (TLambda value) |
| Assign a value to Lambda data member. More...
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TLambda & | SetLambda (void) |
| Assign a value to Lambda data member. More...
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bool | IsSetEntropy (void) const |
| Karlin-Altschul parameter H Check if a value has been assigned to Entropy data member. More...
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bool | CanGetEntropy (void) const |
| Check if it is safe to call GetEntropy method. More...
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void | ResetEntropy (void) |
| Reset Entropy data member. More...
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TEntropy | GetEntropy (void) const |
| Get the Entropy member data. More...
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void | SetEntropy (TEntropy value) |
| Assign a value to Entropy data member. More...
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TEntropy & | SetEntropy (void) |
| Assign a value to Entropy data member. More...
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virtual void | Reset (void) |
| Reset the whole object. More...
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| CSerialObject (void) |
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virtual | ~CSerialObject (void) |
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virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
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virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More...
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virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More...
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virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More...
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void | ThrowUnassigned (TMemberIndex index) const |
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void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
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bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More...
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const string & | GetNamespaceName (void) const |
| Get namespace name. More...
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bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More...
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const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More...
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| CObject (void) |
| Constructor. More...
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| CObject (const CObject &src) |
| Copy constructor. More...
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virtual | ~CObject (void) |
| Destructor. More...
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CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More...
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bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More...
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bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More...
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bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More...
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bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More...
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void | AddReference (void) const |
| Add reference to object. More...
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void | RemoveReference (void) const |
| Remove reference to object. More...
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void | ReleaseReference (void) const |
| Remove reference without deleting object. More...
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virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More...
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virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More...
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void * | operator new (size_t size) |
| Define new operator for memory allocation. More...
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void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More...
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void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More...
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void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More...
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void * | operator new (size_t size, void *place) |
| Define new operator. More...
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void | operator delete (void *ptr, void *place) |
| Define delete operator. More...
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void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More...
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void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More...
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| CDebugDumpable (void) |
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virtual | ~CDebugDumpable (void) |
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void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
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void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
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void | DumpToConsole (void) const |
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