CValidError_descr Class Reference

Search Toolkit Book for CValidError_descr

#include <objtools/validator/validerror_descr.hpp>

Inheritance diagram for CValidError_descr:

Collaboration diagram for CValidError_descr:

Public Member Functions
	CValidError_descr (CValidError_imp &imp)
	~CValidError_descr () override
void	ValidateSeqDescr (const CSeq_descr &descr, const CSeq_entry &ctx)
bool	ValidateStructuredComment (const CSeqdesc &desc, bool report)

Private Attributes
CValidError_desc	m_DescValidator
Private Attributes inherited from CValidError_base
CValidError_imp &	m_Imp
CScope *	m_Scope

Additional Inherited Members
Private Member Functions inherited from CValidError_base
	CValidError_base (CValidError_imp &imp)
virtual	~CValidError_base ()
void	PostErr (EDiagSev sv, EErrType et, const string &msg, const CSerialObject &obj)
void	PostErr (EDiagSev sv, EErrType et, const string &msg, const CSeq_feat &ft)
void	PostErr (EDiagSev sv, EErrType et, const string &msg, const CBioseq &sq)
void	PostErr (EDiagSev sv, EErrType et, const string &msg, const CSeq_entry &ctx, const CSeqdesc &ds)
void	PostErr (EDiagSev sv, EErrType et, const string &msg, const CBioseq_set &set)
void	PostErr (EDiagSev sv, EErrType et, const string &msg, const CSeq_annot &annot)
void	PostErr (EDiagSev sv, EErrType et, const string &msg, const CSeq_graph &graph)
void	PostErr (EDiagSev sv, EErrType et, const string &msg, const CBioseq &sq, const CSeq_graph &graph)
void	PostErr (EDiagSev sv, EErrType et, const string &msg, const CSeq_align &align)
void	PostErr (EDiagSev sv, EErrType et, const string &msg, const CSeq_entry &entry)
CCacheImpl &	GetCache ()
Static Private Member Functions inherited from CValidError_base
static CSeq_entry_Handle	GetAppropriateXrefParent (CSeq_entry_Handle seh)

Detailed Description

Definition at line 55 of file validerror_descr.hpp.

Constructor & Destructor Documentation

CValidError_descr()

CValidError_descr::CValidError_descr

(

CValidError_imp &

imp

)

Definition at line 50 of file validerror_descr.cpp.

~CValidError_descr()

CValidError_descr::~CValidError_descr ( )

override

Definition at line 56 of file validerror_descr.cpp.

Member Function Documentation

ValidateSeqDescr()

void CValidError_descr::ValidateSeqDescr	(	const CSeq_descr &	descr,
		const CSeq_entry &	ctx
	)

Definition at line 61 of file validerror_descr.cpp.

References ctx, CSeqdesc_Base::e_Comment, CSeqdesc_Base::e_Create_date, CSeqdesc_Base::e_Dbxref, CSeqdesc_Base::e_Embl, CSeqdesc_Base::e_Genbank, CSeqdesc_Base::e_Het, CSeqdesc_Base::e_Maploc, CSeqdesc_Base::e_Method, CSeqdesc_Base::e_Modif, CSeqdesc_Base::e_Mol_type, CSeqdesc_Base::e_Molinfo, CSeqdesc_Base::e_Name, CSeqdesc_Base::e_Num, CSeqdesc_Base::e_Org, CSeqdesc_Base::e_Pdb, CSeqdesc_Base::e_Pir, CSeqdesc_Base::e_Prf, CSeqdesc_Base::e_Pub, CSeqdesc_Base::e_Region, CSeqdesc_Base::e_Source, CSeqdesc_Base::e_Sp, CSeqdesc_Base::e_Title, CSeqdesc_Base::e_Update_date, CSeqdesc_Base::e_User, eDiag_Error, eErr_SEQ_DESCR_MultipleBioSources, eErr_SEQ_DESCR_MultipleTitles, NStr::EqualNocase(), FOR_EACH_DESCRIPTOR_ON_DESCR, CSeqdesc_Base::GetSource(), CBioSource::GetTaxname(), CBioSource::IsSetTaxname(), kEmptyCStr, m_DescValidator, CValidError_base::PostErr(), CValidError_desc::ValidateSeqDesc(), and CSeqdesc_Base::Which().

Referenced by CValidError_bioseq::ValidateBioseq(), and CValidError_bioseqset::x_ValidateSetDescriptors().

ValidateStructuredComment()

bool CValidError_descr::ValidateStructuredComment	(	const CSeqdesc &	desc,
		bool	report
	)

Definition at line 167 of file validerror_descr.cpp.

References m_DescValidator, and CValidError_desc::ValidateStructuredCommentInternal().

Referenced by CValidError_bioseq::ValidateSeqDescContext().

Member Data Documentation

m_DescValidator

CValidError_desc CValidError_descr::m_DescValidator

private

Definition at line 65 of file validerror_descr.hpp.

Referenced by ValidateSeqDescr(), and ValidateStructuredComment().

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The documentation for this class was generated from the following files:

• include/objtools/validator/validerror_descr.hpp
• src/objtools/validator/validerror_descr.cpp