StructureWindow Class Reference

Search Toolkit Book for StructureWindow

#include "structure_window.hpp"
(Private to src/app/cn3d.)

Inheritance diagram for StructureWindow:

Collaboration diagram for StructureWindow:

Public Types
enum	{   MID_OPEN = 1 , MID_NETWORK_OPEN , MID_SAVE_SAME , MID_SAVE_AS ,   MID_PNG , MID_REFIT_ALL , MID_PREFERENCES , MID_FONTS ,   MID_OPENGL_FONT , MID_SEQUENCE_FONT , MID_EXIT , MID_ZOOM_IN ,   MID_ZOOM_OUT , MID_RESET , MID_RESTORE , MID_NEXT_FRAME ,   MID_PREV_FRAME , MID_FIRST_FRAME , MID_LAST_FRAME , MID_ALL_FRAMES ,   MID_STEREO , MID_ANIMATE , MID_PLAY , MID_SPIN ,   MID_STOP , MID_ANIM_CONTROLS , MID_SHOW_HIDE , MID_SHOW_ALL ,   MID_SHOW_DOMAINS , MID_SHOW_ALIGNED , MID_SHOW_CHAINS , MID_SHOW_UNALIGNED ,   MID_SHOW_UNALIGNED_ALL , MID_SHOW_UNALIGNED_ALN_DOMAIN , MID_SHOW_SELECTED_RESIDUES , MID_SHOW_SELECTED_DOMAINS ,   MID_DIST_SELECT , MID_SELECT_CHAIN , MID_SELECT_MOLECULE , MID_EDIT_STYLE ,   MID_RENDER , MID_WORM , MID_TUBE , MID_WIRE ,   MID_BNS , MID_SPACE , MID_SC_TOGGLE , MID_COLORS ,   MID_SECSTRUC , MID_ALIGNED , MID_CONS , MID_IDENTITY ,   MID_VARIETY , MID_WGHT_VAR , MID_INFO , MID_FIT ,   MID_BLOCK_FIT , MID_BLOCK_Z_FIT , MID_BLOCK_ROW_FIT , MID_OBJECT ,   MID_DOMAIN , MID_MOLECULE , MID_RESIDUE , MID_RAINBOW ,   MID_HYDROPHOB , MID_CHARGE , MID_TEMP , MID_ELEMENT ,   MID_ANNOTATE , MID_FAVORITES , MID_ADD_FAVORITE , MID_REMOVE_FAVORITE ,   MID_FAVORITES_FILE , MID_SHOW_LOG , MID_SHOW_LOG_START , MID_SHOW_SEQ_V ,   MID_SEND_SELECTION , MID_CDD_OVERVIEW , MID_EDIT_CDD_NAME , MID_EDIT_CDD_DESCR ,   MID_EDIT_CDD_NOTES , MID_EDIT_CDD_REFERENCES , MID_EDIT_CDD_BOOK_REFERENCES , MID_ANNOT_CDD ,   MID_CDD_REJECT_SEQ , MID_CDD_SHOW_REJECTS , MID_MESSAGING , MID_HELP_COMMANDS ,   MID_ONLINE_HELP , MID_ABOUT = wxID_ABOUT , MID_FAVORITES_BEGIN = 100 , MID_FAVORITES_END = 149 }

Public Member Functions
	StructureWindow (const wxString &title, const wxPoint &pos, const wxSize &size)
	~StructureWindow ()
void	ReceivedCommand (const std::string &fromApp, unsigned long id, const std::string &command, const std::string &data)
void	ReceivedReply (const std::string &fromApp, unsigned long id, ncbi::MessageResponder::ReplyStatus status, const std::string &data)
void	SetupFileMessenger (const std::string &messageFilename, const std::string &messageApp, bool readOnly)
bool	IsFileMessengerActive (void) const
void	SendCommand (const std::string &toApp, const std::string &command, const std::string &data)
bool	LoadData (const char *filename, bool force, bool noAlignmentWindow, ncbi::objects::CNcbi_mime_asn1 *mimeData=NULL)
bool	SaveDialog (bool prompt, bool canCancel)
void	SetWindowTitle (void)
void	DialogTextChanged (const MultiTextDialog *changed)
void	DialogDestroyed (const MultiTextDialog *destroyed)
void	SetPreferredFavoriteStyle (const std::string &s)
void	ShowCDDOverview (void)
void	ShowCDDAnnotations (void)
void	ShowCDDReferences (void)
void	ShowCDDBookReferences (void)
void	SetRenderingMenuFlag (int which)
void	SetColoringMenuFlag (int which)
Public Member Functions inherited from MultiTextDialogOwner
virtual	~MultiTextDialogOwner (void)

Public Attributes
Cn3DGLCanvas *	glCanvas

Private Types
enum	{ ANIM_FRAMES , ANIM_SPIN }

Private Member Functions
void	DestroyNonModalDialogs (void)
void	OnExit (wxCommandEvent &event)
void	OnCloseWindow (wxCloseEvent &event)
void	OnShowWindow (wxCommandEvent &event)
void	OnOpen (wxCommandEvent &event)
void	OnSave (wxCommandEvent &event)
void	OnPNG (wxCommandEvent &event)
void	OnAlignStructures (wxCommandEvent &event)
void	OnAdjustView (wxCommandEvent &event)
void	OnShowHide (wxCommandEvent &event)
void	OnSelect (wxCommandEvent &event)
void	OnSetStyle (wxCommandEvent &event)
void	OnEditFavorite (wxCommandEvent &event)
void	OnSelectFavorite (wxCommandEvent &event)
void	OnCDD (wxCommandEvent &event)
void	OnPreferences (wxCommandEvent &event)
void	OnSetFont (wxCommandEvent &event)
void	OnAnimate (wxCommandEvent &event)
void	OnAnimationTimer (wxTimerEvent &event)
void	OnHelp (wxCommandEvent &event)
void	OnSendSelection (wxCommandEvent &event)
void	SetupFavoritesMenu (void)
void	OnFileMessagingTimer (wxTimerEvent &event)

Private Attributes
CDDAnnotateDialog *	cddAnnotateDialog
MultiTextDialog *	cddDescriptionDialog
MultiTextDialog *	cddNotesDialog
CDDRefDialog *	cddRefDialog
CDDBookRefDialog *	cddBookRefDialog
CDDSplashDialog *	cddOverview
wxMenuBar *	menuBar
wxMenu *	fileMenu
wxMenu *	favoritesMenu
wxMenu *	windowMenu
std::string	preferredFavoriteStyle
wxTimer	animationTimer
int	animationMode
double	spinIncrement
wxHtmlHelpController *	helpController
wxFileConfig *	helpConfig
ncbi::FileMessagingManager	fileMessagingManager
wxTimer	fileMessagingTimer
ncbi::FileMessenger *	fileMessenger
std::string	messageTargetApp
CommandProcessor *	commandProcessor

Detailed Description

Definition at line 69 of file structure_window.hpp.

Member Enumeration Documentation

anonymous enum

anonymous enum

Enumerator
MID_OPEN
MID_NETWORK_OPEN
MID_SAVE_SAME
MID_SAVE_AS
MID_PNG
MID_REFIT_ALL
MID_PREFERENCES
MID_FONTS
MID_OPENGL_FONT
MID_SEQUENCE_FONT
MID_EXIT
MID_ZOOM_IN
MID_ZOOM_OUT
MID_RESET
MID_RESTORE
MID_NEXT_FRAME
MID_PREV_FRAME
MID_FIRST_FRAME
MID_LAST_FRAME
MID_ALL_FRAMES
MID_STEREO
MID_ANIMATE
MID_PLAY
MID_SPIN
MID_STOP
MID_ANIM_CONTROLS
MID_SHOW_HIDE
MID_SHOW_ALL
MID_SHOW_DOMAINS
MID_SHOW_ALIGNED
MID_SHOW_CHAINS
MID_SHOW_UNALIGNED
MID_SHOW_UNALIGNED_ALL
MID_SHOW_UNALIGNED_ALN_DOMAIN
MID_SHOW_SELECTED_RESIDUES
MID_SHOW_SELECTED_DOMAINS
MID_DIST_SELECT
MID_SELECT_CHAIN
MID_SELECT_MOLECULE
MID_EDIT_STYLE
MID_RENDER
MID_WORM
MID_TUBE
MID_WIRE
MID_BNS
MID_SPACE
MID_SC_TOGGLE
MID_COLORS
MID_SECSTRUC
MID_ALIGNED
MID_CONS
MID_IDENTITY
MID_VARIETY
MID_WGHT_VAR
MID_INFO
MID_FIT
MID_BLOCK_FIT
MID_BLOCK_Z_FIT
MID_BLOCK_ROW_FIT
MID_OBJECT
MID_DOMAIN
MID_MOLECULE
MID_RESIDUE
MID_RAINBOW
MID_HYDROPHOB
MID_CHARGE
MID_TEMP
MID_ELEMENT
MID_ANNOTATE
MID_FAVORITES
MID_ADD_FAVORITE
MID_REMOVE_FAVORITE
MID_FAVORITES_FILE
MID_SHOW_LOG
MID_SHOW_LOG_START
MID_SHOW_SEQ_V
MID_SEND_SELECTION
MID_CDD_OVERVIEW
MID_EDIT_CDD_NAME
MID_EDIT_CDD_DESCR
MID_EDIT_CDD_NOTES
MID_EDIT_CDD_REFERENCES
MID_EDIT_CDD_BOOK_REFERENCES
MID_ANNOT_CDD
MID_CDD_REJECT_SEQ
MID_CDD_SHOW_REJECTS
MID_MESSAGING
MID_HELP_COMMANDS
MID_ONLINE_HELP
MID_ABOUT
MID_FAVORITES_BEGIN
MID_FAVORITES_END

Definition at line 96 of file structure_window.hpp.

anonymous enum

anonymous enum

private

Enumerator
ANIM_FRAMES
ANIM_SPIN

Definition at line 252 of file structure_window.hpp.

Constructor & Destructor Documentation

StructureWindow()

StructureWindow::StructureWindow	(	const wxString &	title,
		const wxPoint &	pos,
		const wxSize &	size
	)

Definition at line 157 of file structure_window.cpp.

References Messenger::AddStructureWindow(), entries, GlobalMessenger(), LoadFavorites(), NULL, REG_ADVANCED_SECTION, REG_CDD_ANNOT_READONLY, REG_CONFIG_SECTION, REG_SHOW_LOG_ON_START, and RegistryGetBoolean().

~StructureWindow()

StructureWindow::~StructureWindow

(

void

)

Definition at line 389 of file structure_window.cpp.

References commandProcessor.

Member Function Documentation

DestroyNonModalDialogs()

void StructureWindow::DestroyNonModalDialogs ( void  )

private

Definition at line 983 of file structure_window.cpp.

References cddAnnotateDialog, cddBookRefDialog, cddDescriptionDialog, cddNotesDialog, cddOverview, cddRefDialog, and MultiTextDialog::DestroyDialog().

Referenced by LoadData(), and OnExit().

DialogDestroyed()

void StructureWindow::DialogDestroyed ( const MultiTextDialog *  destroyed )

virtual

Implements MultiTextDialogOwner.

Definition at line 976 of file structure_window.cpp.

References cddDescriptionDialog, cddNotesDialog, NULL, and TRACEMSG.

DialogTextChanged()

void StructureWindow::DialogTextChanged ( const MultiTextDialog *  changed )

virtual

Implements MultiTextDialogOwner.

Definition at line 958 of file structure_window.cpp.

References cddDescriptionDialog, cddNotesDialog, ERRORMSG, MultiTextDialog::GetLine(), MultiTextDialog::GetLines(), glCanvas, StructureSet::SetCDDDescription(), StructureSet::SetCDDNotes(), and Cn3DGLCanvas::structureSet.

IsFileMessengerActive()

bool StructureWindow::IsFileMessengerActive ( void  ) const

inline

Definition at line 85 of file structure_window.hpp.

References fileMessenger, and NULL.

Referenced by Messenger::IsFileMessengerActive(), OnExit(), OnSave(), and SendCommand().

LoadData()

bool StructureWindow::LoadData	(	const char *	filename,
		bool	force,
		bool	noAlignmentWindow,
		ncbi::objects::CNcbi_mime_asn1 *	mimeData = NULL
	)

Definition at line 1603 of file structure_window.cpp.

References StructureSet::alignmentManager, OpenGLRenderer::AttachStructureSet(), Messenger::CacheHighlights(), DestroyNonModalDialogs(), eModel_type_ncbi_all_atom, ERRORMSG, fileMenu, glCanvas, GlobalMessenger(), StructureSet::IsCDD(), LoadDataOnly(), menuBar, MID_OPEN, MID_SAVE_AS, StructureSet::MonitorAlignments(), NULL, preferredFavoriteStyle, Messenger::RemoveAllHighlights(), Cn3DGLCanvas::renderer, Messenger::SetAllWindowTitles(), Cn3DGLCanvas::SetCurrent(), SetWorkingTitle(), AlignmentManager::ShowSequenceViewer(), and Cn3DGLCanvas::structureSet.

Referenced by Cn3DApp::OnInit(), and OnOpen().

OnAdjustView()

void StructureWindow::OnAdjustView ( wxCommandEvent &  event )

private

Definition at line 1208 of file structure_window.cpp.

References OpenGLRenderer::ChangeView(), OpenGLRenderer::EnableStereo(), OpenGLRenderer::eZoomIn, OpenGLRenderer::eZoomOut, glCanvas, menuBar, MID_ALL_FRAMES, MID_FIRST_FRAME, MID_LAST_FRAME, MID_NEXT_FRAME, MID_PREV_FRAME, MID_RESET, MID_RESTORE, MID_STEREO, MID_ZOOM_IN, MID_ZOOM_OUT, Cn3DGLCanvas::renderer, OpenGLRenderer::ResetCamera(), OpenGLRenderer::RestoreSavedView(), Cn3DGLCanvas::SetCurrent(), OpenGLRenderer::ShowAllFrames(), OpenGLRenderer::ShowFirstFrame(), OpenGLRenderer::ShowLastFrame(), OpenGLRenderer::ShowNextFrame(), and OpenGLRenderer::ShowPreviousFrame().

OnAlignStructures()

void StructureWindow::OnAlignStructures ( wxCommandEvent &  event )

private

Definition at line 1279 of file structure_window.cpp.

References StructureSet::alignmentManager, b, blocks, AlignmentManager::GetCurrentMultipleAlignment(), BlockMultipleAlignment::GetMaster(), BlockMultipleAlignment::GetUngappedAlignedBlocks(), glCanvas, GlobalMessenger(), i, compile_time_bits::range(), AlignmentManager::RealignAllDependentStructures(), Cn3DGLCanvas::SetCurrent(), and Cn3DGLCanvas::structureSet.

OnAnimate()

void StructureWindow::OnAnimate ( wxCommandEvent &  event )

private

Definition at line 664 of file structure_window.cpp.

References ANIM_FRAMES, ANIM_SPIN, animationMode, animationTimer, StructureSet::frameMap, glCanvas, menuBar, MID_ANIM_CONTROLS, MID_PLAY, MID_SPIN, MID_STOP, REG_ANIMATION_SECTION, REG_FRAME_DELAY, REG_SPIN_DELAY, REG_SPIN_INCREMENT, RegistryGetDouble(), RegistryGetInteger(), spinIncrement, and Cn3DGLCanvas::structureSet.

OnAnimationTimer()

void StructureWindow::OnAnimationTimer ( wxTimerEvent &  event )

private

Definition at line 715 of file structure_window.cpp.

References ANIM_FRAMES, ANIM_SPIN, animationMode, OpenGLRenderer::ChangeView(), OpenGLRenderer::eXYRotateHV, OpenGLRenderer::GetRotateSpeed(), glCanvas, MID_NEXT_FRAME, Cn3DGLCanvas::renderer, and spinIncrement.

OnCDD()

void StructureWindow::OnCDD ( wxCommandEvent &  event )

private

Definition at line 1081 of file structure_window.cpp.

References StructureSet::alignmentManager, cddDescriptionDialog, cddNotesDialog, CompareSequencesByIdentifier(), ERRORMSG, first(), StructureSet::GetCDDDescription(), StructureSet::GetCDDName(), StructureSet::GetCDDNotes(), StructureSet::GetRejects(), glCanvas, GlobalMessenger(), i, int, StructureSet::IsCDD(), MID_ANNOT_CDD, MID_CDD_OVERVIEW, MID_CDD_REJECT_SEQ, MID_CDD_SHOW_REJECTS, MID_EDIT_CDD_BOOK_REFERENCES, MID_EDIT_CDD_DESCR, MID_EDIT_CDD_NAME, MID_EDIT_CDD_NOTES, MID_EDIT_CDD_REFERENCES, r(), SequenceSet::sequences, StructureSet::sequenceSet, Messenger::SetAllWindowTitles(), StructureSet::SetCDDName(), SetWorkingTitle(), ShowCDDAnnotations(), ShowCDDBookReferences(), ShowCDDOverview(), ShowCDDReferences(), MultiTextDialog::ShowDialog(), StructureSet::ShowRejects(), Cn3DGLCanvas::structureSet, and WX_TO_STD.

OnCloseWindow()

void StructureWindow::OnCloseWindow ( wxCloseEvent &  event )

private

Definition at line 394 of file structure_window.cpp.

References animationTimer, fileMessagingTimer, and MID_EXIT.

OnEditFavorite()

void StructureWindow::OnEditFavorite ( wxCommandEvent &  event )

private

Definition at line 840 of file structure_window.cpp.

References NStr::CompareNocase(), ERRORMSG, f, favoriteStyles, favoriteStylesChanged, CCn3d_style_settings_set_Base::Get(), GetFavoritesFile(), StyleManager::GetGlobalStyle(), glCanvas, i, LoadFavorites(), MID_ADD_FAVORITE, MID_FAVORITES_BEGIN, MID_FAVORITES_END, MID_FAVORITES_FILE, MID_REMOVE_FAVORITE, NO_FAVORITES_FILE, NULL, REG_CONFIG_SECTION, REG_FAVORITES_NAME, RegistrySetString(), CCn3d_style_settings_set_Base::Reset(), SaveFavorites(), StyleSettings::SaveSettingsToASN(), CCn3d_style_settings_set_Base::Set(), CCn3d_style_settings_Base::SetName(), SetupFavoritesMenu(), Cn3DGLCanvas::structureSet, StructureSet::styleManager, and WX_TO_STD.

OnExit()

void StructureWindow::OnExit ( wxCommandEvent &  event )

private

Definition at line 401 of file structure_window.cpp.

References animationTimer, DestroyNonModalDialogs(), fileMessagingTimer, GlobalMessenger(), helpConfig, helpController, IsFileMessengerActive(), messageTargetApp, NULL, Messenger::RemoveStructureWindow(), SaveDialog(), SaveFavorites(), SendCommand(), and Messenger::SequenceWindowsSave().

OnFileMessagingTimer()

void StructureWindow::OnFileMessagingTimer ( wxTimerEvent &  event )

private

Definition at line 443 of file structure_window.cpp.

References fileMessagingManager.

OnHelp()

void StructureWindow::OnHelp ( wxCommandEvent &  event )

private

Definition at line 511 of file structure_window.cpp.

References CN3D_VERSION_STRING, ERRORMSG, Get(), GetPrefsDir(), GetProgramDir(), helpConfig, helpController, INFOMSG, LaunchWebPage(), MID_ABOUT, MID_HELP_COMMANDS, and MID_ONLINE_HELP.

OnOpen()

void StructureWindow::OnOpen ( wxCommandEvent &  event )

private

Definition at line 1654 of file structure_window.cpp.

References GetModelTypeFromUser(), glCanvas, GlobalMessenger(), LoadData(), LoadStructureViaCache(), MID_NETWORK_OPEN, MID_OPEN, NULL, SaveDialog(), Messenger::SequenceWindowsSave(), ncbi::grid::netcache::search::fields::size, Cn3DGLCanvas::structureSet, userDir, and WX_TO_STD.

OnPNG()

void StructureWindow::OnPNG ( wxCommandEvent &  event )

private

Definition at line 659 of file structure_window.cpp.

References ExportPNG(), and glCanvas.

OnPreferences()

void StructureWindow::OnPreferences ( wxCommandEvent &  event )

private

Definition at line 994 of file structure_window.cpp.

References glCanvas.

OnSave()

void StructureWindow::OnSave ( wxCommandEvent &  event )

private

Definition at line 1684 of file structure_window.cpp.

References StructureSet::ConvertMimeDataToCDD(), currentFile, currentFileIsBinary, data, StructureSet::eAnyAlignmentData, StructureSet::eCDDData, StructureSet::ePSSMData, StructureSet::eRowOrderData, ERRORMSG, StructureSet::eUpdateData, fileMenu, StructureSet::GetCDDName(), GetWorkingDir(), glCanvas, GlobalMessenger(), INFOMSG, StructureSet::IsCDD(), StructureSet::IsCDDInMime(), IsFileMessengerActive(), messageTargetApp, MID_SAVE_AS, StructureSet::SaveASNData(), SendCommand(), Messenger::SequenceWindowsSave(), Messenger::SetAllWindowTitles(), SetWorkingTitle(), string, Cn3DGLCanvas::structureSet, TRACEMSG, userDir, WARNINGMSG, and WX_TO_STD.

Referenced by SaveDialog().

OnSelect()

void StructureWindow::OnSelect ( wxCommandEvent &  event )

private

Definition at line 557 of file structure_window.cpp.

References Messenger::AddHighlights(), Molecule::eBiopolymer, Molecule::eDNA, Molecule::eNonpolymer, Molecule::eOther, Molecule::eProtein, Molecule::eRNA, StructureSet::eSelectHeterogen, StructureSet::eSelectNucleotide, StructureSet::eSelectOtherMoleculesOnly, StructureSet::eSelectProtein, StructureSet::eSelectSolvent, Molecule::eSolvent, DistanceSelectDialog::fpSpinCtrl, glCanvas, GlobalMessenger(), i, DistanceSelectDialog::m_Heterogen, DistanceSelectDialog::m_Nucleotide, DistanceSelectDialog::m_Other, DistanceSelectDialog::m_Protein, DistanceSelectDialog::m_Solvent, MID_DIST_SELECT, MID_SELECT_CHAIN, MID_SELECT_MOLECULE, names, StructureSet::objects, r(), Messenger::RemoveAllHighlights(), Molecule::residues, StructureSet::SelectByDistance(), Cn3DGLCanvas::structureSet, and Messenger::ToggleHighlight().

OnSelectFavorite()

void StructureWindow::OnSelectFavorite ( wxCommandEvent &  event )

private

Definition at line 922 of file structure_window.cpp.

References f, favoriteStyles, CCn3d_style_settings_set_Base::Get(), glCanvas, i, INFOMSG, MID_FAVORITES_BEGIN, MID_FAVORITES_END, SetColoringMenuFlag(), StyleManager::SetGlobalStyle(), SetRenderingMenuFlag(), Cn3DGLCanvas::structureSet, and StructureSet::styleManager.

OnSendSelection()

void StructureWindow::OnSendSelection ( wxCommandEvent &  event )

private

Definition at line 494 of file structure_window.cpp.

References data, ERRORMSG, fileMessenger, GlobalMessenger(), messageTargetApp, and SendCommand().

OnSetFont()

void StructureWindow::OnSetFont ( wxCommandEvent &  event )

private

Definition at line 730 of file structure_window.cpp.

References ERRORMSG, glCanvas, GlobalMessenger(), INFOMSG, MID_OPENGL_FONT, MID_SEQUENCE_FONT, Messenger::NewSequenceViewerFont(), Messenger::PostRedrawAllStructures(), REG_FONT_NATIVE_FONT_INFO, REG_OPENGL_FONT_SECTION, REG_SEQUENCE_FONT_SECTION, RegistryGetString(), RegistrySetString(), result, Cn3DGLCanvas::SetCurrent(), Cn3DGLCanvas::SetGLFontFromRegistry(), and WX_TO_STD.

OnSetStyle()

void StructureWindow::OnSetStyle ( wxCommandEvent &  event )

private

Definition at line 1324 of file structure_window.cpp.

References StyleManager::CheckGlobalStyleSettings(), COLORING_SHORTCUT, StyleManager::EditGlobalStyle(), StyleManager::EditUserAnnotations(), glCanvas, GlobalMessenger(), MID_ALIGNED, MID_ANNOTATE, MID_BLOCK_FIT, MID_BLOCK_ROW_FIT, MID_BLOCK_Z_FIT, MID_BNS, MID_CHARGE, MID_DOMAIN, MID_EDIT_STYLE, MID_ELEMENT, MID_FIT, MID_HYDROPHOB, MID_IDENTITY, MID_INFO, MID_MOLECULE, MID_OBJECT, MID_RAINBOW, MID_RESIDUE, MID_SC_TOGGLE, MID_SECSTRUC, MID_SPACE, MID_TEMP, MID_TUBE, MID_VARIETY, MID_WGHT_VAR, MID_WIRE, MID_WORM, Messenger::PostRedrawAllSequenceViewers(), Messenger::PostRedrawAllStructures(), RENDERING_SHORTCUT, SetColoringMenuFlag(), Cn3DGLCanvas::SetCurrent(), SetRenderingMenuFlag(), Cn3DGLCanvas::structureSet, and StructureSet::styleManager.

OnShowHide()

void StructureWindow::OnShowHide ( wxCommandEvent &  event )

private

Definition at line 1228 of file structure_window.cpp.

References ShowHideManager::GetShowHideInfo(), glCanvas, i, ShowHideManager::MakeAllVisible(), MID_SHOW_ALIGNED, MID_SHOW_ALL, MID_SHOW_CHAINS, MID_SHOW_DOMAINS, MID_SHOW_HIDE, MID_SHOW_SELECTED_DOMAINS, MID_SHOW_SELECTED_RESIDUES, MID_SHOW_UNALIGNED_ALL, MID_SHOW_UNALIGNED_ALN_DOMAIN, ShowHideManager::ShowAlignedChains(), ShowHideManager::ShowAlignedDomains(), ShowHideManager::ShowDomainsWithHighlights(), StructureSet::showHideManager, ShowHideManager::ShowResidues(), ShowHideManager::ShowSelectedResidues(), and Cn3DGLCanvas::structureSet.

OnShowWindow()

void StructureWindow::OnShowWindow ( wxCommandEvent &  event )

private

Definition at line 942 of file structure_window.cpp.

References StructureSet::alignmentManager, glCanvas, menuBar, MID_SHOW_LOG, MID_SHOW_LOG_START, MID_SHOW_SEQ_V, RaiseLogWindow(), REG_CONFIG_SECTION, REG_SHOW_LOG_ON_START, RegistrySetBoolean(), AlignmentManager::ShowSequenceViewer(), and Cn3DGLCanvas::structureSet.

ReceivedCommand()

void StructureWindow::ReceivedCommand	(	const std::string &	fromApp,
		unsigned long	id,
		const std::string &	command,
		const std::string &	data
	)

Definition at line 449 of file structure_window.cpp.

References command, commandProcessor, data, fileMessenger, INFOMSG, CommandProcessor::ProcessCommand(), MessageResponder::REPLY_ERROR, MessageResponder::REPLY_OKAY, and TRACEMSG.

ReceivedReply()

void StructureWindow::ReceivedReply	(	const std::string &	fromApp,
		unsigned long	id,
		ncbi::MessageResponder::ReplyStatus	status,
		const std::string &	data
	)

Definition at line 470 of file structure_window.cpp.

References data, ERRORMSG, INFOMSG, and MessageResponder::REPLY_OKAY.

SaveDialog()

bool StructureWindow::SaveDialog	(	bool	prompt,
		bool	canCancel
	)

Definition at line 1001 of file structure_window.cpp.

References glCanvas, StructureSet::HasDataChanged(), MID_SAVE_AS, MID_SAVE_SAME, NULL, OnSave(), option, and Cn3DGLCanvas::structureSet.

Referenced by OnExit(), and OnOpen().

SendCommand()

void StructureWindow::SendCommand	(	const std::string &	toApp,
		const std::string &	command,
		const std::string &	data
	)

Definition at line 480 of file structure_window.cpp.

References command, data, ERRORMSG, fileMessenger, INFOMSG, and IsFileMessengerActive().

Referenced by Messenger::FileMessengerSend(), OnExit(), OnSave(), and OnSendSelection().

SetColoringMenuFlag()

void StructureWindow::SetColoringMenuFlag

(

int

which

)

Definition at line 1382 of file structure_window.cpp.

References menuBar, MID_ALIGNED, MID_BLOCK_FIT, MID_BLOCK_ROW_FIT, MID_BLOCK_Z_FIT, MID_CHARGE, MID_DOMAIN, MID_ELEMENT, MID_FIT, MID_HYDROPHOB, MID_IDENTITY, MID_INFO, MID_MOLECULE, MID_OBJECT, MID_RAINBOW, MID_RESIDUE, MID_SECSTRUC, MID_TEMP, MID_VARIETY, and MID_WGHT_VAR.

Referenced by LoadDataOnly(), OnSelectFavorite(), and OnSetStyle().

SetPreferredFavoriteStyle()

void StructureWindow::SetPreferredFavoriteStyle ( const std::string &  s )

inline

Definition at line 94 of file structure_window.hpp.

References preferredFavoriteStyle.

Referenced by Cn3DApp::OnInit().

SetRenderingMenuFlag()

void StructureWindow::SetRenderingMenuFlag

(

int

which

)

Definition at line 1373 of file structure_window.cpp.

References menuBar, MID_BNS, MID_SPACE, MID_TUBE, MID_WIRE, and MID_WORM.

Referenced by LoadDataOnly(), OnSelectFavorite(), and OnSetStyle().

SetupFavoritesMenu()

void StructureWindow::SetupFavoritesMenu ( void  )

private

Definition at line 909 of file structure_window.cpp.

References f, favoritesMenu, favoriteStyles, CCn3d_style_settings_set_Base::Get(), i, MID_FAVORITES_BEGIN, and MID_FAVORITES_END.

Referenced by OnEditFavorite().

SetupFileMessenger()

void StructureWindow::SetupFileMessenger	(	const std::string &	messageFilename,
		const std::string &	messageApp,
		bool	readOnly
	)

Definition at line 427 of file structure_window.cpp.

References fileMessagingManager, fileMessagingTimer, fileMessenger, messageTargetApp, MID_MESSAGING, MID_SEND_SELECTION, and windowMenu.

Referenced by Cn3DApp::OnInit().

SetWindowTitle()

void StructureWindow::SetWindowTitle

(

void

)

Definition at line 506 of file structure_window.cpp.

References CN3D_VERSION_STRING, GetWorkingTitle(), and SetTitle().

Referenced by Messenger::SetAllWindowTitles().

ShowCDDAnnotations()

void StructureWindow::ShowCDDAnnotations

(

void

)

Definition at line 1047 of file structure_window.cpp.

References cddAnnotateDialog, glCanvas, and Cn3DGLCanvas::structureSet.

Referenced by CDDSplashDialog::OnButton(), and OnCDD().

ShowCDDBookReferences()

void StructureWindow::ShowCDDBookReferences

(

void

)

Definition at line 1072 of file structure_window.cpp.

References cddBookRefDialog, glCanvas, and Cn3DGLCanvas::structureSet.

Referenced by OnCDD().

ShowCDDOverview()

void StructureWindow::ShowCDDOverview

(

void

)

Definition at line 1037 of file structure_window.cpp.

References cddOverview, glCanvas, and Cn3DGLCanvas::structureSet.

Referenced by LoadDataOnly(), and OnCDD().

ShowCDDReferences()

void StructureWindow::ShowCDDReferences

(

void

)

Definition at line 1063 of file structure_window.cpp.

References cddRefDialog, glCanvas, and Cn3DGLCanvas::structureSet.

Referenced by CDDSplashDialog::OnButton(), and OnCDD().

Member Data Documentation

animationMode

int StructureWindow::animationMode

private

Definition at line 253 of file structure_window.hpp.

Referenced by OnAnimate(), and OnAnimationTimer().

animationTimer

wxTimer StructureWindow::animationTimer

private

Definition at line 251 of file structure_window.hpp.

Referenced by OnAnimate(), OnCloseWindow(), and OnExit().

cddAnnotateDialog

CDDAnnotateDialog* StructureWindow::cddAnnotateDialog

private

Definition at line 215 of file structure_window.hpp.

Referenced by DestroyNonModalDialogs(), and ShowCDDAnnotations().

cddBookRefDialog

CDDBookRefDialog* StructureWindow::cddBookRefDialog

private

Definition at line 219 of file structure_window.hpp.

Referenced by DestroyNonModalDialogs(), and ShowCDDBookReferences().

cddDescriptionDialog

MultiTextDialog* StructureWindow::cddDescriptionDialog

private

Definition at line 217 of file structure_window.hpp.

Referenced by DestroyNonModalDialogs(), DialogDestroyed(), DialogTextChanged(), and OnCDD().

cddNotesDialog

MultiTextDialog * StructureWindow::cddNotesDialog

private

Definition at line 217 of file structure_window.hpp.

Referenced by DestroyNonModalDialogs(), DialogDestroyed(), DialogTextChanged(), and OnCDD().

cddOverview

CDDSplashDialog* StructureWindow::cddOverview

private

Definition at line 220 of file structure_window.hpp.

Referenced by DestroyNonModalDialogs(), and ShowCDDOverview().

cddRefDialog

CDDRefDialog* StructureWindow::cddRefDialog

private

Definition at line 218 of file structure_window.hpp.

Referenced by DestroyNonModalDialogs(), and ShowCDDReferences().

commandProcessor

CommandProcessor* StructureWindow::commandProcessor

private

Definition at line 267 of file structure_window.hpp.

Referenced by ReceivedCommand(), and ~StructureWindow().

favoritesMenu

wxMenu * StructureWindow::favoritesMenu

private

Definition at line 247 of file structure_window.hpp.

Referenced by SetupFavoritesMenu().

fileMenu

wxMenu* StructureWindow::fileMenu

private

Definition at line 247 of file structure_window.hpp.

Referenced by LoadData(), and OnSave().

fileMessagingManager

ncbi::FileMessagingManager StructureWindow::fileMessagingManager

private

Definition at line 261 of file structure_window.hpp.

Referenced by OnFileMessagingTimer(), and SetupFileMessenger().

fileMessagingTimer

wxTimer StructureWindow::fileMessagingTimer

private

Definition at line 262 of file structure_window.hpp.

Referenced by OnCloseWindow(), OnExit(), and SetupFileMessenger().

fileMessenger

ncbi::FileMessenger* StructureWindow::fileMessenger

private

Definition at line 263 of file structure_window.hpp.

Referenced by IsFileMessengerActive(), OnSendSelection(), ReceivedCommand(), SendCommand(), and SetupFileMessenger().

glCanvas

Cn3DGLCanvas* StructureWindow::glCanvas

Definition at line 76 of file structure_window.hpp.

Referenced by DialogTextChanged(), LoadData(), OnAdjustView(), OnAlignStructures(), OnAnimate(), OnAnimationTimer(), OnCDD(), OnEditFavorite(), Cn3DApp::OnInit(), OnOpen(), OnPNG(), OnPreferences(), OnSave(), OnSelect(), OnSelectFavorite(), OnSetFont(), OnSetStyle(), OnShowHide(), OnShowWindow(), Messenger::ProcessRedraws(), Messenger::RemoveAllHighlights(), SaveDialog(), Messenger::SetHighlights(), ShowCDDAnnotations(), ShowCDDBookReferences(), ShowCDDOverview(), and ShowCDDReferences().

helpConfig

wxFileConfig* StructureWindow::helpConfig

private

Definition at line 258 of file structure_window.hpp.

Referenced by OnExit(), and OnHelp().

helpController

wxHtmlHelpController* StructureWindow::helpController

private

Definition at line 257 of file structure_window.hpp.

Referenced by OnExit(), and OnHelp().

menuBar

wxMenuBar* StructureWindow::menuBar

private

Definition at line 246 of file structure_window.hpp.

Referenced by LoadData(), OnAdjustView(), OnAnimate(), OnShowWindow(), SetColoringMenuFlag(), and SetRenderingMenuFlag().

messageTargetApp

std::string StructureWindow::messageTargetApp

private

Definition at line 265 of file structure_window.hpp.

Referenced by OnExit(), OnSave(), OnSendSelection(), and SetupFileMessenger().

preferredFavoriteStyle

std::string StructureWindow::preferredFavoriteStyle

private

Definition at line 249 of file structure_window.hpp.

Referenced by LoadData(), and SetPreferredFavoriteStyle().

spinIncrement

double StructureWindow::spinIncrement

private

Definition at line 254 of file structure_window.hpp.

Referenced by OnAnimate(), and OnAnimationTimer().

windowMenu

wxMenu * StructureWindow::windowMenu

private

Definition at line 247 of file structure_window.hpp.

Referenced by SetupFileMessenger().

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The documentation for this class was generated from the following files:

• src/app/cn3d/structure_window.hpp
• src/app/cn3d/structure_window.cpp