NCBI C++ ToolKit
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Search Toolkit Book for BlastDiagnostics
Return statistics from the BLAST search. More...
#include <algo/blast/core/blast_diagnostics.h>
Public Attributes | |
BlastUngappedStats * | ungapped_stat |
Ungapped extension counts. More... | |
BlastGappedStats * | gapped_stat |
Gapped extension counts. More... | |
BlastRawCutoffs * | cutoffs |
Various raw values for the cutoffs. More... | |
MT_LOCK | mt_lock |
Mutex for updating diagnostics data in a multi-threaded search. More... | |
Return statistics from the BLAST search.
Definition at line 82 of file blast_diagnostics.h.
BlastRawCutoffs* BlastDiagnostics::cutoffs |
Various raw values for the cutoffs.
Definition at line 85 of file blast_diagnostics.h.
Referenced by Blast_DiagnosticsCopy(), Blast_DiagnosticsFree(), Blast_DiagnosticsInit(), Blast_DiagnosticsUpdate(), BLAST_PreliminarySearchEngine(), s_RPSPreliminarySearchEngine(), and testRawCutoffs().
BlastGappedStats* BlastDiagnostics::gapped_stat |
Gapped extension counts.
Definition at line 84 of file blast_diagnostics.h.
Referenced by Blast_DiagnosticsCopy(), Blast_DiagnosticsFree(), Blast_DiagnosticsInit(), Blast_DiagnosticsUpdate(), s_BlastSearchEngineCore(), s_BlastSearchEngineOneContext(), testBlastHitCounts(), and testShortMatchDiagnostics().
MT_LOCK BlastDiagnostics::mt_lock |
Mutex for updating diagnostics data in a multi-threaded search.
Definition at line 86 of file blast_diagnostics.h.
Referenced by Blast_DiagnosticsFree(), Blast_DiagnosticsInitMT(), and Blast_DiagnosticsUpdate().
BlastUngappedStats* BlastDiagnostics::ungapped_stat |
Ungapped extension counts.
Definition at line 83 of file blast_diagnostics.h.
Referenced by Blast_DiagnosticsCopy(), Blast_DiagnosticsFree(), Blast_DiagnosticsInit(), Blast_DiagnosticsUpdate(), Blast_RunFullSearch(), CBlastTracebackSearch::CBlastTracebackSearch(), CLocalBlast::GetNumExtensions(), s_BlastSearchEngineOneContext(), testBlastHitCounts(), and testShortMatchDiagnostics().