Include dependency graph for gzguts.h:
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Classes | |
| struct | gz_state |
Macros | |
| #define | ZLIB_INTERNAL |
| #define | _POSIX_SOURCE |
| #define | local static |
| #define | zstrerror() strerror(errno) |
| #define | DEF_MEM_LEVEL MAX_MEM_LEVEL |
| #define | GZBUFSIZE 8192 |
| #define | GZ_NONE 0 |
| #define | GZ_READ 7247 |
| #define | GZ_WRITE 31153 |
| #define | GZ_APPEND 1 /* mode set to GZ_WRITE after the file is opened */ |
| #define | LOOK 0 /* look for a gzip header */ |
| #define | COPY 1 /* copy input directly */ |
| #define | GZIP 2 /* decompress a gzip stream */ |
| #define | GT_OFF(x) (sizeof(int) == sizeof(z_off64_t) && (x) > gz_intmax()) |
Typedefs | |
| typedef gz_state FAR * | gz_statep |
Functions | |
| voidp | malloc (uInt size) |
| void | free (voidpf ptr) |
| ZEXTERN gzFile ZEXPORT | gzopen64 (const char *, const char *) |
| ZEXTERN z_off64_t ZEXPORT | gzseek64 (gzFile, z_off64_t, int) |
| ZEXTERN z_off64_t ZEXPORT | gztell64 (gzFile) |
| ZEXTERN z_off64_t ZEXPORT | gzoffset64 (gzFile) |
| void | gz_error (gz_statep, int, const char *) |
| unsigned | gz_intmax (void) |
Macro Definition Documentation
◆ _POSIX_SOURCE
◆ COPY
◆ DEF_MEM_LEVEL
| #define DEF_MEM_LEVEL MAX_MEM_LEVEL |
◆ GT_OFF
◆ GZ_APPEND
◆ GZ_NONE
◆ GZ_READ
◆ GZ_WRITE
◆ GZBUFSIZE
◆ GZIP
◆ local
◆ LOOK
◆ ZLIB_INTERNAL
◆ zstrerror
Typedef Documentation
◆ gz_statep
Function Documentation
◆ free()
| void free | ( | voidpf | ptr | ) |
Referenced by __sfree(), _bcp_convert_in(), _bcp_convert_out(), _bcp_exec_in(), _bcp_exec_out(), _bcp_read_hostfile(), _blk_clean_desc(), _blk_get_col_data(), _cs_convert(), _cs_convert_ex(), _cs_locale_free(), _cs_locale_free_contents(), _csclient_msg(), _ct_deallocate_dynamic(), _ct_diag_clearmsg(), _ct_initialise_cmd(), _ctclient_msg(), _mm_free(), _SQLAllocEnv(), _SQLAllocStmt(), _SQLBindParameter(), _SQLDriverConnect(), _SQLFreeEnv(), _SQLFreeStmt(), _SQLGetDiagRec(), _SQLTables(), _tdsodbc_dbconvert(), add_couple(), add_pattern(), bm::aligned_free(), AlignmentFileFree(), CCharPtrFunctions< T >::Assign(), atd(), bcp_colfmt(), Blast_CompositionBasedStats(), Blast_CompositionWorkspaceFree(), Blast_ForbiddenRangesRelease(), BLAST_GetAllTranslations(), BLAST_GetGappedScore(), Blast_MatrixInfoFree(), Blast_OptimizeTargetFrequencies(), Blast_RedoAlignParamsFree(), Blast_RedoAlignParamsNew(), Blast_RedoOneMatch(), Blast_RedoOneMatchSmithWaterman(), BLAST_ValidateOptions(), BlastCompo_AlignmentsFree(), BlastCompo_HeapRelease(), BlastCompressedAaLookupTableDestruct(), BlastKmerGetKmerSet(), BlastKmerGetKmerSet2(), BlastMBLookupTableNew(), BlastSparseUint1ArrayFree(), BLbasicSmithWatermanScoreOnly(), BLSmithWatermanFindStart(), BLspecialSmithWatermanFindStart(), BLspecialSmithWatermanScoreOnly(), bNNI(), BOOST_AUTO_TEST_CASE(), bsClose(), BUF_AppendEx(), BUF_Destroy(), BUF_Erase(), BUF_PrependEx(), BUF_Read(), buffer_add_row(), BZ2_bzReadClose(), BZ2_bzReadOpen(), BZ2_bzWriteClose64(), BZ2_bzWriteOpen(), change_database(), CVDBBlastUtil::CheckVDBs(), clean_up(), CBDB_Env::CleanLog(), CTL_CursorResultExpl::ClearFields(), CCassConnection::CloseSession(), col_free(), compile_branch(), CONN_Close(), CONN_CreateEx(), ConnNetInfo_Create(), ConnNetInfo_GetValue(), ConnNetInfo_Log(), ConnNetInfo_SetupStandardArgs(), ConnNetInfo_SetUserHeader(), continue_logging_in(), convert(), convert_and_free(), Vector< T >::copy(), Matrix< T >::copy(), copy_data_to_host_var(), CBDB_RawFile::CountRecs(), cprl(), CVDBBlastUtil::CreateBioseqFromVDBSeqId(), CRYPT_Free(), cs_config(), cs_ctx_alloc(), cs_ctx_drop(), cs_diag_clearmsg(), cs_locale(), ct_cmd_drop(), ct_cmd_props(), ct_con_drop(), ct_con_props(), ct_connect(), ct_data_info(), ct_get_data(), ct_param(), ct_setparam(), dbbylist(), dbclose(), dbclropt(), dbconvert_ps(), dbfcmd(), DBLB_GetServer(), dblogin(), dbperror(), dbprrow(), dbrecftos(), dbrpcinit(), dbrpcparam(), dbsetnull(), dbsetopt(), dbsqlsend(), dbstring_free(), dbuse(), dbg_block_allocator::deallocate(), bm::block_allocator::deallocate(), dbg_ptr_allocator::deallocate(), bm::ptr_allocator::deallocate(), default_bzfree(), CDeleter< X >::Delete(), desc_alloc(), desc_free(), bm::blocks_manager< Alloc >::destroy_arena(), CBDB_File::DestroyDBT_Clone(), bm::basic_bmatrix< BV >::destruct_bvector(), DllRegisterServer(), double_to_string(), ErrorInfoFree(), ex_display_results(), CLogWriter::ExecuteSlice(), expand_workspace(), extend_inputline(), CArchive::ExtractFileToHeap(), FILE_CreateConnectorEx(), CArchiveZip::FinalizeMemory(), FindNotNullPtrTest(), rapidjson::CrtAllocator::Free(), CCompressionDictionary::Free(), free_convert(), free_dsninfo(), free_file(), free_file_chain(), free_pattern_chain(), bm::pointer_pool_array::free_pool(), free_retparam(), free_tests(), FreeCorDef(), FreeFldMtf(), FreeGibScd(), freeMatrix(), FreeQrySeq(), FreeRcxPtl(), FreeSeqMtf(), freeSet(), freeSubTree(), FreeThdTbl(), freeTree(), get_coll_md5(), get_stacktrace(), CEUtils_Request::GetBaseURL(), jetbrains::teamcity::getFlowIdFromEnvironment(), CNCBlobStorage::GetFullBlobsList(), CDBLB_ServiceMapper::GetServerOptions(), CDirEntry::GetTmpName(), GiDataIndex_Free(), gz_error(), gz_init(), gz_look(), gz_open(), gzclose_r(), gzclose_w(), gzdopen(), HEAP_Detach(), HSPPathFree(), HSPPathNew(), huft_free(), Matrix< T >::in(), Vector< T >::in(), ir_fp_entry_destroy(), ir_hash_destroy(), JumperGapAlignFree(), JumperPrelimEditBlockFree(), JumperPrelimEditBlockNew(), key_free(), LBSM_SubmitPenaltyOrRerate(), CNSStartIDs::Load(), loadNewickTree(), LOG_Delete(), LOG_WriteInternal(), LoginDlgProc(), LSOCK_Close(), main(), make_c_unique(), make_col_name(), match(), mdb_cursor_close(), mdb_cursors_close(), mdb_dbi_close(), mdb_dbi_open(), mdb_dbis_update(), mdb_dpage_free(), mdb_env_close(), mdb_env_close1(), mdb_env_copyfd1(), mdb_env_cwalk(), mdb_env_init_meta(), mdb_midl_free(), mdb_reader_check0(), mdb_txn_begin(), mdb_txn_commit(), mdb_txn_end(), MEMORY_CreateConnectorEx(), MIME_ParseContentTypeEx(), CdPssmInput::moveUpLongestRow(), MT_LOCK_Delete(), CBDB_Env::MutexGetFree(), NaHashLookupThreadDataFree(), NCBI_LinearSolution(), NCBI_SingularValueDecomposition(), NCBI_SymmetricEigens(), NcbiBlowfishFini(), NcbiDecrypt(), NcbiDeleteMbedTlsCertCredentials(), NcbiDeleteTlsCertCredentials(), NcbiGetCgiClientIPv6Ex(), NcbiGetHostIfConfEx(), NcbiLog_Context_Destroy(), NcbiLog_Destroy(), NcbiLog_FreeMemory(), NcbiLog_MTLock_Delete(), NcbiMessagePlusError(), NcbiOpenURL(), new_free(), Nlm_DenseMatrixFree(), Nlm_DenseMatrixNew(), Nlm_Int4MatrixFree(), Nlm_Int4MatrixNew(), Nlm_LtriangMatrixNew(), Nlm_MemFree(), NNI(), NNIEdgeTest(), odbc_buf_free(), odbc_clear_bools(), odbc_connect(), odbc_errs_pop(), odbc_errs_reset(), odbc_sql2tds(), odbc_wstr2str(), DBT_ptr::operator=(), OrderThdTbl(), param_clear(), pcre_compile2(), pcre_exec(), pcre_free_study(), pcre_free_substring(), pcre_free_substring_list(), pool_free(), CBDB_Env::PrintLockStat(), CBDB_Env::PrintMemStat(), CBDB_Env::PrintMutexStat(), CBDB_RawFile::PrintStat(), read_login_info(), readhdr(), CTL_CursorResultExpl::ReadItem(), real_test(), rapidjson::CrtAllocator::Realloc(), REG_Delete(), regexec(), regfree(), ReNewtonSystemFree(), reset_save_context(), rpc_clear(), s_AddDeflineFromOrganismLine(), s_AddServerInfo(), s_AddSkip(), s_AddSkipInfo(), s_Adjust(), s_AdjustNetParams(), s_AfrpInitLineData(), s_AlignFileRawFree(), s_AlignRawSeqFree(), s_AsnClose(), s_BlastHSPBestHitRun(), s_BlastHSPBestHitRun_RPS(), s_BlastHSPCullingFinal(), s_BlastHSPMapperSplicedPairedRun(), s_BlockIsConsistent(), s_BuildTokenList(), s_CallAdjust(), s_Cleanup(), s_Close(), s_CloseLogFiles(), s_CommentLocFree(), s_Connect(), s_ConnectAndSend(), s_ConvertDataToOutput(), s_Create(), s_CreateAnchorPatternForMarkedIDs(), s_CreateConnector(), s_CreateHttpConnector(), s_CreateOnTop(), s_CreateSequencesBasedOnTokenPatterns(), s_Destroy(), s_DestroyContext(), s_DestroyHttpConnector(), s_Disconnect(), s_DoesBlockHaveIds(), s_ExportToHitlist(), s_ExtendAlignment(), s_ExtendAlignmentCleanup(), s_FindOrganismComment(), s_FreeBlastCompo_QueryInfoArray(), s_FreeWriteBackMem(), s_FTPCommandEx(), s_FTPExecute(), s_FTPRename(), s_GetNextInfo(), s_HEAP_Collect(), s_HEAP_Link(), s_HttpAny_Read(), s_Init(), s_InitDestination(), s_IntLinkFree(), s_IsConnected_(), s_IsContentTypeDefined(), s_IsUpdateNeeded(), s_LBSM_ResizeHeap(), s_LengthListFree(), s_LineInfoFree(), s_LineInfoReaderFree(), s_LoadServices(), s_LoadSingleService(), s_LOG_FileCleanup(), s_LOG_FileHandler(), s_MaskSequence(), s_MatchingSequenceRelease(), s_MbedTlsCreate(), s_MbedTlsDelete(), s_ModifyUserHeader(), s_Ncbid_Read(), s_on_ipc_connection(), s_on_peer_close(), s_Open(), s_ParseResponse(), s_PreRead(), s_ProcessAlignFileRawForMarkedIDs(), s_ProcessBlockLines(), s_Read(), s_Read_(), s_ReadData(), s_ReadHeader(), s_ReadOrgNamesFromText(), s_RecvMsg(), s_RemoveOrganismCommentFromLine(), s_RemoveServerInfo(), s_ReplaceNexusTypeChar(), s_ReportSegmentedAlignmentError(), s_ReprocessIds(), s_Reset(), s_Resolve(), s_SavedParametersFree(), s_SearchForwardedFor(), s_SendMsg(), s_SequenceDataRelease(), s_SequenceGetProteinRange(), s_SequenceGetTranslatedRange(), s_SizeInfoFree(), s_SkipSkip(), s_SocketConnectorBuilder(), s_SortChains(), s_StringCountFree(), s_StripToPattern(), s_SubjectIndexNewCleanup(), s_TrimHSP(), s_TrimResultsByTotalHSPLimitEx(), s_TrimSpace(), s_Update(), s_VT_Close(), s_VT_Open(), s_VT_Write(), s_WindowInfoFree(), s_WindowsFromProteinAligns(), s_WindowsFromTranslatedAligns(), same_smp(), save_retparam(), search_interface_file(), SeqDB_UnpackAmbiguities(), SequenceInfoFree(), SERV_Close(), SERV_LBSMD_Open(), SERV_Print(), SERV_ReadInfoEx(), SERV_ServerPort(), SERV_SetImplicitServerType(), SERV_Update(), SERV_WriteInfo(), SERVICE_CreateConnectorEx(), CConnTest::ServiceOkay(), CNcbiEnvironment::Set(), set_env_value(), CCharPtrFunctions< T >::SetDefault(), CHTMLHelper::SetNL(), slo0(), SmithWatermanScoreWithTraceback(), SOCK_CloseEx(), SOCK_Poll(), SOCK_Reconnect(), SReadQualityOptionsFree(), stack_free(), CConnTest::StatefulOkay(), StopThreadLogging(), string_to_datetime(), SubjectIndexFree(), SubjectIndexIteratorFree(), SubjectIndexNew(), tables(), tdoGetIniFileName(), tds5_fix_dot_query(), tds5_rsa_encrypt(), tds71_read_table_names(), tds71_submit_prepexec(), tds7_build_bulk_insert_stmt(), tds7_build_param_def_from_params(), tds7_build_param_def_from_query(), tds7_send_auth(), tds7_send_login(), tds7_write_param_def_from_params(), tds_alloc_login(), tds_alloc_param_result(), tds_answer_challenge_ntlmv2(), tds_bcp_fread(), tds_bcp_start_insert_stmt(), tds_config_env_tdsdump(), tds_connect(), tds_convert_string(), tds_cursor_open(), tds_deinit_bcpinfo(), tds_deinit_connection(), tds_deinit_tvp(), tds_dstr_alloc(), tds_dstr_copyn(), tds_dstr_free(), tds_dstr_set(), tds_dynamic_stream_init(), tds_free_bcp_column_data(), tds_free_bcpinfo(), tds_free_column(), tds_free_compute_results(), tds_free_context(), tds_free_locale(), tds_free_login(), tds_free_namelist(), tds_free_packets(), tds_free_results(), tds_free_socket(), tds_freeaddrinfo(), tds_get_home_file(), tds_iconv_free(), tds_iconv_get_info(), tds_init_login(), tds_ntlm_free(), tds_ntlm_get_auth(), tds_ntlm_handle_next(), tds_open_socket(), tds_param_free(), tds_parse_locale(), tds_process_env_chg(), tds_process_login_tokens(), tds_process_loginack(), tds_process_tabname(), tds_put_param_as_string(), tds_random_buffer(), tds_read_conf_file(), tds_read_config_info(), tds_read_interfaces(), tds_release_cursor(), tds_release_dynamic(), tds_row_free(), tds_setup_connection(), tds_strftime(), tds_submit_execdirect(), tds_submit_prepare(), tds_submit_query_params(), tds_submit_queryf(), tds_vasprintf(), tds_vstrbuild(), tdsdbopen(), tdsdump_col(), test(), test0(), test_err(), test_generic(), test_params(), test_rows(), TRIGGER_Close(), try_tds_login(), tvp_free(), jetbrains::teamcity::underTeamcity(), unfinished_query_test(), CNcbiEnvironment::Unset(), URL_Connect(), URL_ConnectEx(), UTIL_GenerateHMAC(), uv_export_close(), VDBSRC_FreeData(), VDBSRC_Get4naSequenceAsString(), VDBSRC_InitErrorMsg(), VDBSRC_InitErrorMsgWithContext(), VDBSRC_InitLocalErrorMsg(), VDBSRC_Load2naSeqToBuffer(), VDBSRC_ReleaseErrorMsg(), VDBSRC_ResetPartialFetchingList(), VDBSRC_ResetReader_2na(), CObjectOStreamAsn::WriteBitString(), CObjectOStreamAsnBinary::WriteBitString(), CObjectOStreamJson::WriteBitString(), CObjectOStreamXml::WriteBitString(), x_AddInfo(), x_ClientAddress(), CQueueDataBase::x_CreateSpaceReserveFile(), CStaticArraySearchBase< NStaticArray::PKeyValuePair< SStaticPair< KeyType, ValueType > >, less< KeyType > >::x_DeallocateFunc(), x_DestroyNetInfo(), x_Finalize(), x_FixupUserHeader(), x_FTPRetrieveCB(), x_GetAccountSidByName(), CEutilsClient::x_GetHostName(), CGlShader::x_GetProgramInfoLog(), CGlShader::x_GetShaderInfoLog(), CUnicodeToAsciiTranslation::x_Initialize(), CVDBBlastUtil::x_MakeVDBSeqSrc(), CConn_Streambuf::x_Message(), x_Open(), x_ProcessReply(), x_PutData(), x_ReadChunkHead(), x_ReadChunkTail(), x_Redirect(), x_Return(), x_SetDefaultReferer(), x_SetHostPort(), x_SetHttpHostTag(), x_SetRequestIDs(), x_SetupConnectionParams(), x_SetupFromNamerd(), x_SetupHttpProxy(), x_UpdateDtabInArgs(), yy_flex_free(), bm::blocks_manager< Alloc >::arena_guard::~arena_guard(), CArrayHolder::~CArrayHolder(), CCgiApplication::~CCgiApplication(), CConservationScoringMethod::~CConservationScoringMethod(), CFastCgiThreadedRequest::CEnv::~CEnv(), CNcbiTestMemoryCleanupList::~CNcbiTestMemoryCleanupList(), CSeqDBAutoFree::~CSeqDBAutoFree(), CSrvSocketTask::~CSrvSocketTask(), CSrvTask::~CSrvTask(), CUnicodeToAsciiTranslation::~CUnicodeToAsciiTranslation(), DBT_ptr::~DBT_ptr(), DynProgProb::~DynProgProb(), LocalMaxStat::~LocalMaxStat(), LocalMaxStatMatrix::~LocalMaxStatMatrix(), Matrix< T >::~Matrix(), bm::serial_stream_iterator< DEC, BLOCK_IDX >::~serial_stream_iterator(), bm::set2set_11_transform< SV >::~set2set_11_transform(), SNCChunkMaps::~SNCChunkMaps(), SNetServerPoolImpl::~SNetServerPoolImpl(), SRawOption::~SRawOption(), SRotatedFontCachePurger::~SRotatedFontCachePurger(), CSeqDB::TSequenceRanges::~TSequenceRanges(), and Vector< T >::~Vector().
◆ gz_error()
Definition at line 581 of file gzlib.c.
References free(), malloc(), NULL, strcat, Z_BUF_ERROR, Z_MEM_ERROR, and Z_OK.
Referenced by gz_reset(), gzclearerr(), and gzseek64().
◆ gz_intmax()
◆ gzoffset64()
◆ gzopen64()
◆ gzseek64()
◆ gztell64()
◆ malloc()
Referenced by _mm_malloc(), _PSIAlignedBlockNew(), _PSIAllocateMatrix(), _PSIComputeFrequenciesFromCDs(), _PSIMatrixFrequencyRatiosNew(), _PSIMsaNew(), _PSIPackedMsaNew(), AascanTestFixture::AascanTestFixture(), add_number(), add_pattern(), add_test(), addToSet(), ALIGN_EX(), bm::aligned_new_malloc(), AlignmentFileNew(), alloc_dsninfo(), bm::block_allocator::allocate(), bm::ptr_allocator::allocate(), dbg_block_allocator::allocate(), dbg_ptr_allocator::allocate(), bm::pointer_pool_array::allocate_pool(), Blast_CompositionWorkspaceNew(), BLAST_CreateMixedFrameDNATranslation(), Blast_ForbiddenRangesInitialize(), BLAST_GapAlignStructNew(), BLAST_GetAllTranslations(), Blast_GetPartialTranslation(), BLAST_GetStandardAaProbabilities(), Blast_HSPClone(), Blast_HSPGetTargetTranslation(), Blast_HSPResultsApplyMasklevel(), BLAST_InitHitListNew(), Blast_IntervalTreeInit(), Blast_MatrixInfoNew(), Blast_OptimizeTargetFrequencies(), BLAST_PackDNA(), Blast_RedoAlignParamsNew(), Blast_ScoreBlkMatrixFill(), Blast_SemiGappedAlign(), Blast_TracebackFromHSPList(), BlastCompo_AlignmentNew(), BlastCompressBlastnaSequence(), BlastCompressedAaLookupTableNew(), BlastHSPBestHitInfoNew(), BlastHSPBestHitParamsNew(), BlastHSPBestHitPipeInfoNew(), BlastHSPCollectorInfoNew(), BlastHSPCollectorParamsNew(), BlastHSPCullingInfoNew(), BlastHSPCullingParamsNew(), BlastHSPCullingPipeInfoNew(), BlastHSPListDup(), BlastHSPMapperInfoNew(), BlastHSPMapperParamsNew(), BlastHSPStreamNew(), BlastKmerGetKmerSet(), BlastKmerGetKmerSet2(), BlastLookupAddWordHit(), BlastMemDup(), BlastSaveInitHsp(), BlastSeqSrcIteratorNewEx(), BlastSeqSrcSetRangesArgNew(), BlastTargetTranslationNew(), BLbasicSmithWatermanScoreOnly(), BLSmithWatermanFindStart(), BLspecialSmithWatermanFindStart(), BLspecialSmithWatermanScoreOnly(), bNNI(), BOOST_AUTO_TEST_CASE(), bsOpenReadStream(), bsOpenWriteStream(), BUF_SetChunkSize(), buildAveragesTable(), BZ2_bzReadOpen(), BZ2_bzWriteOpen(), CEffectiveSearchSpacesMemento::CEffectiveSearchSpacesMemento(), CBDB_File::CloneDBT_Key(), compile_branch(), CompressedAascanTestFixture::CompressedAascanTestFixture(), ConnNetInfo_CloneInternal(), ConnNetInfo_CreateInternal(), ConnNetInfo_Log(), ConnNetInfo_URL(), bm::basic_bmatrix< BV >::construct_bvector(), ContextOffsetsToOffsetArray(), CArrayHolder::Convert(), bm::blocks_manager< Alloc >::copy_to_arena(), cs_config(), CSrvSocketTask::CSrvSocketTask(), ct_cmd_props(), ct_con_props(), dbbylist(), NtlookupTestFixture::debruijnInit(), default_bzalloc(), ErrorInfoNew(), ex_display_results(), expand_workspace(), extend_inputline(), CArchive::ExtractFileToHeap(), fastme_run(), FILE_CreateConnectorEx(), FindNotNullPtrTest(), g_CORE_Sprintf(), GapPrelimEditBlockNew(), get_stacktrace(), CNCBlobStorage::GetFullBlobsList(), GetReverseNuclSequence(), AalookupTestFixture::GetSeqBlk(), GetSequenceNucleotideBothStrands(), GetSequenceProtein(), GetSequenceSingleNucleotideStrand(), GiDataIndex_New(), gz_error(), gz_init(), gz_look(), gz_open(), gzdopen(), HEAP_Copy(), HEAP_Create(), huft_build(), initDoubleMatrix(), CNCStat::Initialize(), initPerm(), LBSM_SubmitPenaltyOrRerate(), loadMatrix(), loadMatrixOLD(), loadNewickTree(), LOG_ComposeMessage(), LOG_Create(), LOG_ToFILE_Ex(), main(), makeEdge(), makeNode(), rapidjson::CrtAllocator::Malloc(), MapperWordHitsNew(), match(), MB_IndexedWordFinder(), MBSpaceNew(), mdb_cursor_open(), mdb_cursor_shadow(), mdb_env_cwalk(), mdb_fname_init(), mdb_midl_alloc(), mdb_page_malloc(), mdb_reader_check0(), mdb_txn_begin(), MEMORY_CreateConnectorEx(), MIME_ParseContentTypeEx(), MT_LOCK_Create(), myMalloc(), NaHashLookupThreadDataNew(), NAMEDPIPE_CreateConnector(), NCBI_LinearSolution(), NCBI_SingularValueDecomposition(), NCBI_strdup(), NCBI_strndup(), NCBI_SymmetricEigens(), NcbiBlowfishInit(), NcbiCrypt(), NcbiDecrypt(), NcbiLog_MTLock_Create(), NcbiMessagePlusError(), new_malloc(), NewickPrintTreeString(), newTree(), Nlm_DenseMatrixNew(), Nlm_Int4MatrixNew(), Nlm_LtriangMatrixNew(), NNI(), NNIEdgeTest(), odbc_buf_get(), DBT_ptr::operator=(), parse_wacky_dsn_string(), pcre_compile2(), pcre_exec(), pcre_get_substring(), pcre_get_substring_list(), pcre_maketables(), pcre_study(), pcregrep(), PHIGetGappedScore(), PIPE_CreateConnector(), pool_allocate(), pool_allocate2(), PSIMatrixNew(), PSIMsaNew(), CObjectIStreamAsnBinary::ReadCString(), CTL_CursorResultExpl::ReadItem(), REG_Create(), regexec(), ReNewtonSystemNew(), RPSLookupTableNew(), RPSRescalePssm(), s_AddDeflineFromOrganismLine(), s_AddLengthRepeat(), s_AddPSSMNeighboringWords(), s_AddServerInfo(), s_AddService(), s_AddSizeInfoAppearances(), s_AddSkip(), s_AddSkipInfo(), s_AdjustNetParams(), s_Align(), s_AlignFileRawNew(), s_AlignRawSeqNew(), s_AllocNewBuf(), s_AllocWriteBackMem(), s_ApplyMap(), s_AsnSetCloseCb(), s_BlastAlignPackedNucl(), s_BlastEvenGapLinkHSPs(), s_BlastGreedyAlignMemAlloc(), s_BlastHSPBestHitNew(), s_BlastHSPBestHitPipeNew(), s_BlastHSPBestHitRun(), s_BlastHSPBestHitRun_RPS(), s_BlastHSPCollectorNew(), s_BlastHSPCullingNew(), s_BlastHSPCullingPipeNew(), s_BlastHSPListsCombineByScore(), s_BlastHSPMapperPairedNew(), s_BlastnDiagHashExtendInitialHit(), s_BlastnDiagTableExtendInitialHit(), s_BlastSetUpAuxStructures(), s_BlastSmallNaLookupFinalize(), s_BlastUnevenGapLinkHSPs(), s_BlockIsConsistent(), s_BracketedCommentListNew(), s_BUF_AllocChunk(), s_CompressedListGetNewCell(), s_Connect(), s_ConvertDataToOutput(), s_CreateAnchorPatternForMarkedIDs(), s_CreateConnector(), s_CreateContext(), s_CreateHttpConnector(), s_CreateOrderedOrgName(), s_CreateSequencesBasedOnTokenPatterns(), s_Disconnect(), s_Dns_Write(), s_DoesBlockHaveIds(), s_FindComment(), s_Firewall_Write(), s_FTPCommandEx(), s_FTPExecute(), s_GapGetState(), s_GappingParamsNew(), s_GetHSPList(), s_GetIdFromString(), s_GetNextInfo(), s_HSPCopy(), s_Http_Write(), s_ImportFromHitlist(), s_Init(), s_IntLinkNew(), s_IsContentTypeDefined(), s_LBSM_ResizeHeap(), s_LengthListNew(), s_LineInfoMergeAndStripSpaces(), s_LineInfoNew(), s_LineInfoReaderNew(), s_LinkedHSPSetArraySetUp(), s_MatchingSequenceInitialize(), s_MatrixInfoInit(), s_MbedTlsCreate(), s_MbedTlsOpen(), s_MergeLinkedHSPSets(), s_ModifyUserHeader(), s_Ncbid_Write(), s_NuclSmithWaterman(), s_OutOfFrameAlignWithTraceback(), s_OutOfFrameGappedAlign(), s_ParseResponse(), s_ProcessBlockLines(), s_Read(), s_Read_(), s_ReadData(), s_ReadFullResponse(), s_ReadHeader(), s_RecvMsg(), s_RemoveOrganismCommentFromLine(), s_ReplaceNexusTypeChar(), s_ReportASN1Error(), s_ReportBadCharError(), s_ReportBadNumSegError(), s_ReportBadSequenceLength(), s_ReportBlockLengthError(), s_ReportCharCommentError(), s_ReportIncorrectNumberOfSequences(), s_ReportIncorrectSequenceLength(), s_ReportLineLengthError(), s_ReportOrgCommentError(), s_ReportRepeatedId(), s_ReportSegmentedAlignmentError(), s_ReportUnusedLine(), s_Resolve(), s_RestrictedGappedAlign(), s_RPSGapAlignDataPrepare(), s_SavedParametersNew(), s_SendMsg(), s_SeqDbGetNextChunk(), s_SizeInfoNew(), s_SmithWatermanScoreOnly(), s_Standalone_Write(), s_StrDup(), s_StringCountNew(), s_StripToPattern(), s_TrimHSP(), s_TrimResultsByTotalHSPLimit(), s_TrimResultsByTotalHSPLimitEx(), s_VT_Descr(), s_VT_Open(), s_VT_Write(), s_WindowInfoNew(), SBlastHitsParametersDup(), SBlastHitsParametersNew(), SCompressedAlphabetNew(), SDustOptionsNew(), SeqDB_UnpackAmbiguities(), SequenceInfoNew(), bm::serial_stream_iterator< DEC, BLOCK_IDX >::serial_stream_iterator(), SERV_CopyInfoEx(), SERV_CreateDnsInfoEx(), SERV_CreateFirewallInfoEx(), SERV_CreateHttpInfoEx(), SERV_CreateNcbidInfoEx(), SERV_CreateStandaloneInfoEx(), SERV_Print(), SERV_Update(), SERVICE_CreateConnectorEx(), bm::set2set_11_transform< SV >::set2set_11_transform(), CSrvTask::SetDiagCtx(), CBlastOptionsLocal::SetEffectiveSearchSpace(), TestFixture::SetUpLookupTable(), CPrimitiveTypeInfoCharPtr< T >::SetValueChar(), SmithWatermanScoreWithTraceback(), SPHIPatternSearchBlkNew(), SplitQueryBlk_GetContextOffsetsForChunk(), SplitQueryBlk_GetQueryContextsForChunk(), SplitQueryBlk_GetQueryIndicesForChunk(), SSegOptionsNew(), stack_malloc(), SThreadLocalDataArrayNew(), SubjectIndexNew(), tables(), tds_alloc_packet(), tds_alloc_param_data(), tds_bcp_read_column_defaults(), tds_dstr_alloc(), tds_dstr_copyn(), tds_dynamic_stream_init(), tds_realloc(), tds_vasprintf(), test(), test_err(), URL_Connect(), URL_ConnectEx(), UTIL_GenerateHMAC(), VDBSRC_FillPartialFetchingList(), VDBSRC_Init2naReader(), VDBSRC_InitData(), VDBSRC_Load2naSeqToBuffer(), CObjectOStreamAsn::WriteBitString(), CObjectOStreamAsnBinary::WriteBitString(), CObjectOStreamJson::WriteBitString(), CObjectOStreamXml::WriteBitString(), CSeqDBVol::x_AllocType(), x_ClientAddress(), CQueueDataBase::x_CreateSpaceReserveFile(), x_Descr(), x_FTPRetrieveCB(), x_GetAccountSidByName(), CGlShader::x_GetProgramInfoLog(), CTracebackSearchTestFixture::x_GetSampleHspStream(), CTracebackSearchTestFixture::x_GetSelfHitHspStream(), CGlShader::x_GetShaderInfoLog(), CPssmEngine::x_GuardProteinQuery(), x_HostPort(), CUnicodeToAsciiTranslation::x_Initialize(), x_PutData(), x_ReadChunkHead(), x_SetHostPort(), CPhiblastTestFixture::x_SetupSequenceBlk(), x_StrcatCRLF(), x_UpdateDtabInArgs(), and yy_flex_alloc().
