GPL17074[Accession] - GEO DataSets

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Select item 2002160131.

High-throughput transposon mutagenesis in the family Enterobacteriaceae reveals core essential genes and rapid turnover of essentiality

(Submitter supplied) The Enterobacteriaceae are a scientifically and medically important clade of bacteria, containing the gut commensal and model organism Escherichia coli, as well as several major human pathogens including Salmonella enterica and Klebsiella pneumoniae. Essential gene sets have been determined for several members of the Enterobacteriaceae, and the E. coli Keio single-gene deletion library is often regarded as a gold standard for gene essentiality studies. more...

Organism:: Citrobacter rodentium; Salmonella enterica subsp. enterica serovar Enteritidis; Enterobacter cloacae; Escherichia coli; Salmonella enterica subsp. enterica serovar Typhimurium; Klebsiella pneumoniae

Type:: Other

8 related Platforms
13 Samples

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Series

Accession:: GSE216013

ID:: 200216013

Select item 2002011122.

Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type 、 ryhB-1、 ryhB-2、 ryhB-1/ryhB-2 Mutant Strains Transcriptomes

(Submitter supplied) Purpose:To investigate the effect of small RNA RyhB-1and RyhB-2 deletion of Salmonella enteritidis on genes expression of genome under simulated intestinal conditions Methods:S. Enteritidis wild type (WT) strain 50336 and mutants △ryhB-1, △ryhB-2, and △ryhB-1/ryhB-2 were grown overnight in 50 mL of the LB medium with 160 rpm shaking at 37°C under aerobic condition, washed thrice, and re-suspended with iron-limited and nutrient-limited medium. more...

Organism:: Salmonella enterica subsp. enterica serovar Enteritidis

Type:: Expression profiling by high throughput sequencing

Platform:: GPL17074
12 Samples

Download data: TXT

Series

Accession:: GSE201112

ID:: 200201112

PubMed Full text in PMC Similar studies

Select item 2001138803.

Transcriptional Sequencing Uncovers Survival Mechanisms of Salmonella enterica serovar Enteritidis in Antibacterial Egg White

(Submitter supplied) Purpose: To elucidated key metabolic pathways important for S. Enteritidis survival in egg white. Methods: RNA sample of Mid-log phase bacteria cultures that grown in M9FeS medium were taken as 0h sample, and bacteria incubated with egg white for 6h 12h and 24h were taken as 6,12,24h RNA sample respectively. Three biological replicates were carried out per sample. RNA sample was sequenced with Illumina HiSeq 2000 System. more...

Organism:: Salmonella enterica subsp. enterica serovar Enteritidis

Type:: Expression profiling by high throughput sequencing

Platform:: GPL17074
12 Samples

Download data: XLSX

Series

Accession:: GSE113880

ID:: 200113880

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001221774.

Identification of common highly expressed genes of Salmonella Enteritidis by in silico prediction of gene expression and in vitro transcriptomic analysis

(Submitter supplied) We report the use of RNA-Seq technique to identify common highly expressed genes in pathogenic poultry-associated field strains of S. Enteritidis grown in LB-salt broth (300mM NaCl) and low-phosphate/low -magnesium/low-pH LPM broth at avian body temperature (42°C).

Organism:: Salmonella enterica subsp. enterica serovar Enteritidis

Type:: Expression profiling by high throughput sequencing

Platform:: GPL17074
6 Samples

Download data: TXT

Series

Accession:: GSE122177

ID:: 200122177

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