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Items: 13

1.

RNA-seq analyses of Fusarium graminearum wild-type GZ03639 and toxoflavin-sensitive mutant under toxoflavin condition

(Submitter supplied) Bacterial pathogen Burkholderia glumae and fungal pathogen Fusarium graminearum cause similar disease symptoms and are often co-isolated from rice heads, inferring interactions between the two pathogens. F. graminearum is resistant to the bacterial toxin toxoflavin, a strong anti-microbial activity, produced by B. glumae. We isolated a toxoflavin-sensitive mutant from transcription factor deletion mutant library of F. more...
Organism:
Fusarium graminearum
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17573
2 Samples
Download data: TXT
Series
Accession:
GSE93640
ID:
200093640
2.

Loss of heterochromatin protein 1 (Hep1) in Fusarium graminearum leads to hypervirulence and mycotoxin overproduction during pathogenic growth.

(Submitter supplied) Upon axenic cultivation in presence of the mycotoxin inducing nitrogen source L- ornithine the HEP1 deletion mutant showed an altered secondary metabolite profile including reduced levels of deoxynivalenol (DON). This finding was contrasted with a 1.5 fold increased infection rate on the susceptible wheat cv. Remus which was accompanied by increased production of DON. Transcriptome analysis of the HEP1 deletion versus the PH-1 wildtype strain during pathogenic growth state as well as during saprophytic growth on dead (non-responding) wheat heads and axenic samples allows to distinguish gene response of the pathogen reacting on signals from the active, defending plant from those regulated by plant substrate effects or in vitro mimicked mycotoxin inducing conditions, providing insights into gene regulation underlying the observed hypervirulence.
Organism:
Fusarium graminearum
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17573
8 Samples
Download data: TXT
Series
Accession:
GSE96705
ID:
200096705
3.

Transcriptome analyses of toxoflavin-dependent genes in Fusarium graminearum wild-type GZ03639 and toxoflavin-sensitive mutants

(Submitter supplied) Bacterial pathogen Burkholderia glumae and fungal pathogen Fusarium graminearum cause similar disease symptoms and often co-isolated from rice heads, inferring interactions between the two pathogens. F. graminearum is resistant to the bacterial toxin toxoflavin, a strong anti-microbial activity, produced by B. glumae. We isolated toxoflavin-sensitive mutants from transcription factor deletion mutant library of F. more...
Organism:
Fusarium graminearum
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17573
16 Samples
Download data: TXT
Series
Accession:
GSE104623
ID:
200104623
4.

RNA-Seq Revealed Differences in Transcriptomes between 3ADON and 15ADON Populations of Fusarium graminearum

(Submitter supplied) Fusarium graminearum is the major causal agent of Fusarium head blight (FHB) in North America and other regions of the world. The pathogen causes direct yield losses and produces various types of trichothecenes mycotoxins [Deoxynivalenol (DON) and its acetylated forms (3-acetyl-4-deoxynivalenol=3ADON and 15-acetyl-4-deoxvevalenol=15ADON), nivalenol (NIV). Recent studies indicated that 3ADON-type isolates were significantly increased in North America and China in recent years and appears to be more aggressive based on growth rate, disease severity on different cultivars, and DON production in vitro. more...
Organism:
Fusarium graminearum
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17573
16 Samples
Download data: FPKM_TRACKING
Series
Accession:
GSE83735
ID:
200083735
5.

small RNA-seq analysis of transcriptomes at 5 day after sexual induction in Fusarium graminearum strains

(Submitter supplied) Fusarium graminearum (teleomorph Gibberella zeae) is a prominent pathogen that infects major cereal crops, such as wheat, barley, and maize. To dissect molecular mechanisms of small non-coding RNA-mediated gene regulation during ascospore production, we compared small RNA transcriptomes of fungal cultures harvested from F. graminearum wild-type strain Z-3639 and RNAi component mutants at 5 days after sexual induction.
Organism:
Fusarium graminearum
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL17573
7 Samples
Download data: TXT
Series
Accession:
GSE87835
ID:
200087835
6.

RNA-seq analysis of transcriptomes at 5 day after sexual induction in Fusarium graminearum strains

(Submitter supplied) Fusarium graminearum (teleomorph Gibberella zeae) is a prominent pathogen that infects major cereal crops, such as wheat, barley, and maize. To dissect molecular mechanisms of small non-coding RNA-mediated gene regulation during ascospore production, we compared transcriptomes of fungal cultures harvested from F. graminearum wild-type strain Z-3639 and RNAi component mutants at 5 days after sexual induction.
Organism:
Fusarium graminearum
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17573
7 Samples
Download data: TXT
Series
Accession:
GSE87724
ID:
200087724
7.

RNA-seq analysis of transcriptomes at 1 day after sexual induction in Fusarium graminearum strains

(Submitter supplied) Fusarium graminearum (teleomorph Gibberella zeae) is a prominent pathogen that infects major cereal crops, such as wheat, barley, and maize. To dissect molecular mechanisms for initial stage of perithecia development, we compared transcriptomes of fungal cultures harvested from F. graminearum wild-type strain Z-3639, abaA, and fpo1 at 1 day after sexual induction.
Organism:
Fusarium graminearum
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17573
9 Samples
Download data: TXT
Series
Accession:
GSE79532
ID:
200079532
8.

RNA-seq analysis of Fusarium graminearum Z-3639 in heat stress

(Submitter supplied) Fusarium graminearum (teleomorph Gibberella zeae) is a prominent pathogen that infects major cereal crops, such as wheat, barley, and maize. To dissect cellular responses toward heat stress in the plant pathogenic fungus F. graminearum, we compared transcriptomes of the fungal cultures incubated in normal temperature condition (25 ºC) and in high temperature condition (37 ºC) for 15 min.
Organism:
Fusarium graminearum
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17573
6 Samples
Download data: TXT
Series
Accession:
GSE78885
ID:
200078885
9.

RNA-seq analysis of FHS1-dependent genes in Fusarium graminearum Z-3639

(Submitter supplied) Fusarium graminearum (teleomorph Gibberella zeae) is a prominent pathogen that infects major cereal crops, such as wheat, barley, and maize. Fhs1 contains a Zn(II)2Cys6 fungal-type DNA-binding domain and localized to nuclei , suggesting that Fhs1 is a transcription factor required for hydroxiurea.
Organism:
Fusarium graminearum
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17573
6 Samples
Download data: TXT
Series
Accession:
GSE73891
ID:
200073891
10.

RNA-seq analysis of FSS1-dependent genes in Fusarium graminearum Z-3639

(Submitter supplied) Fusarium graminearum (teleomorph Gibberella zeae) is a prominent pathogen that infects major cereal crops, such as wheat, barley, and maize. FSS1 contains a Zn(II)2Cys6 fungal-type DNA-binding domain and localized exclusively to nuclei responding to sodium, suggesting that FSS1 is a TF required for sodium tolerance. By RNA-seq and genetic studies, we found a P-type ATPase pump (FgENA5) that is under control of FSS1 and is responsible for phenotypic defects of fss1 mutants. more...
Organism:
Fusarium graminearum
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17573
6 Samples
Download data: TXT
Series
Accession:
GSE59177
ID:
200059177
11.

The Fusarium graminearum Histone H3 K27 Methyltransferase KMT6 Regulates Development and Expression of Secondary Metabolite Gene Clusters

(Submitter supplied) We performed ChIP-seq of histone modifications and RNA-seq in WT and kmt6 mutant Fusarium graminearum grown in high and low nitrogen conditions.
Organism:
Fusarium graminearum
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL17573
36 Samples
Download data: TXT
Series
Accession:
GSE50689
ID:
200050689
12.

RNA-seq Analysis of RFX1-dependent Genes in Fusarium graminearum Z-3639

(Submitter supplied) Fusarium graminearum is a major pathogen of Fusarium head blight in wheat, barley, and rice, as well as ear rot and stalk rot in maize. Regulatory Factor X (RFX) transcription factors are well-conserved in animals and fungi, but their functions are diverse, ranging from DNA-damage response to ciliary gene regulation. We investigated the role of the sole RFX transcription factor, RFX1, in F. graminearum. more...
Organism:
Fusarium graminearum
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17573
2 Samples
Download data: TXT
Series
Accession:
GSE52198
ID:
200052198
13.

RNA-seq Analysis of FlbD-, AbaA-, and WetA-dependent Genes in Fusarium graminearum Z-3639

(Submitter supplied) Fusarium graminearum (teleomorph Gibberella zeae) is a prominent pathogen that infects major cereal crops, such as wheat, barley, and maize. Conidiogenesis had been intensively studied in Aspergillus nidulans and regulatory pathway genes have been known to regulate conidiogenesis in stage specific manner. We reported the functional analyses of flbD, abaA, and wetA orthologs in F. graminearum. To understand genome-wide transcriptional profiling of conidiation, we employed RNA-seq of the wild-type Fusarium graminearum Z-3639 and each gene deletion mutants with three time courses (0 h, 6 h and 12 h after induction of conidiogenesis).
Organism:
Fusarium graminearum
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17573
14 Samples
Download data: TXT
Series
Accession:
GSE46133
ID:
200046133
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