GEO DataSets

(Submitter supplied) For isolation of rod, cone, and pineal photoreceptor cells, we used the transgenic zebrafish lines, Tg(rho:egfp)ja2Tg, Tg(gnat2:egfp)ja23Tg, and Tg(exorh:EGFP)ja1Tg, which express EGFP in rods, all cone subtypes, and pineal rod cells, respectively. Retinas were dissected from dark-adapted adult fish under dim red light. The isolated retinas were digested with trypsin in Ca2+-free Ringer’s solution. The reaction was terminated by adding soybean trypsin inhibitor and fetal bovine serum. The dissociated EGFP-positive cells were isolated with a fluorescence activating cell sorter (FACSAria, BD Biosciences) by the following three parameters: forward scatter, side scatter and green fluorescence. Goal was to determine differentially expressed genes among three types of photoreceptor cells.

Organism:

Danio rerio

Type:

Expression profiling by array

Platform:

GPL6457

4 Samples

Download data: TXT

(Submitter supplied) To identify previously unknown determinants of endothelial cell sprouting, we defined and exploited a pharmacological strategy for the manipulation of angiogenic cell behavior in vivo. Whereas high vascular endothelial growth factor receptor (Vegfr) signaling is known to promote tip cell (TC) specification, activation of the Notch receptor via its ligand Delta-like 4 (Dll4) represses the TC phenotype to promote stalk cell (SC) fate. more...

Organism:

Danio rerio

Type:

Expression profiling by array

Platform:

GPL6457

4 Samples

Download data: TXT

(Submitter supplied) The mechanism of cardiomyocyte prliferation and migration after ventricular resection is a complex and dynamic process. To resolve this, we chose the zebrafish model organism for studying post-injury heart regeneration and wound healing progress via systems biology approach. Transcriptome microarray data and histological analysis of injured fish were sampled at different time points during recovery process. more...

Organism:

Danio rerio

Type:

Expression profiling by array

Platform:

GPL6457

9 Samples

Download data: TXT

(Submitter supplied) Zebrafish embryos have been exposed to Chlorpyrifos from 24 to 48 hours post fertilization

Organism:

Danio rerio

Type:

Expression profiling by array

Platform:

GPL6457

3 Samples

Download data: GPR

(Submitter supplied) Zebrafish embryos have been exposed to Aroclor 1254 from 24 to 48 hours post fertilization

Organism:

Danio rerio

Type:

Expression profiling by array

Platform:

GPL6457

3 Samples

Download data: GPR

(Submitter supplied) Transcriptional profiling of ZF-4 cells comparing mock infection cells with cells infected with NNV. This assay is used for determination of gene expression profiling at 6 hpi under NNV infection.

Organism:

Danio rerio

Type:

Expression profiling by array

Platform:

GPL6457

1 Sample

Download data: TXT

(Submitter supplied) Transcriptional profiling of ZF-4 cells comparing controle morpholino-infection cells with rig1 morpholino-infection cells. This assay is used for determination of gene expression profiling at 6 hpi under NNV infection in rig1 knockdown cells.

Organism:

Danio rerio

Type:

Expression profiling by array

Platform:

GPL6457

1 Sample

Download data: TXT

(Submitter supplied) The gene expression profile of the adult zebrafish cornea was assessed in comparison to those from closely associated surface tissues: the dermis and epidermis. This SuperSeries is composed of the SubSeries listed below.

Organism:

Danio rerio

Type:

Expression profiling by array

Platforms:

GPL2878 GPL6457

14 Samples

Download data: GPR

(Submitter supplied) Transcriptional profiling of adult zebrafish cornea against epidermis as a reference.

Organism:

Danio rerio

Type:

Expression profiling by array

Platform:

GPL6457

8 Samples

Download data: GPR

(Submitter supplied) The aim of this study was to identify genes that are regulated by ccm2 signaling with the zebrafish heart at around 72 hours post fertilization.

Organism:

Danio rerio

Type:

Expression profiling by array

Platform:

GPL6457

4 Samples

Download data: TXT

(Submitter supplied) The interaction between fungal pathogen and host innnate and adaptive immunity during infection is a complex and dynamic process. To resolve this, we chose the zebrafish model organism as the host to study C. albicans infection via systems biology approach. Transcriptome microarray data and histological analysis of surviving fish were sampled at different post-infection time points. Time-course microarray data following primary and secondary infection of zebrafish by Candida albicans were obatined. more...

Organism:

Danio rerio

Type:

Expression profiling by array

Platform:

GPL6457

30 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Danio rerio

Type:

Expression profiling by array; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platforms:

GPL6457 GPL14875 GPL9319

16 Samples

Download data: GPR

(Submitter supplied) Identification of genes downstream of ndr1 in zebrafish blastulas, and identification of direct targets by reference with Smad2 and Eomesa ChIP-seq data

Organism:

Danio rerio

Type:

Expression profiling by array

Platform:

GPL6457

6 Samples

Download data: GPR

(Submitter supplied) The interaction between neurogenesis and angiogenesis after traumatic brain injury is a complex and dynamic process. To resolve this, we chose the zebrafish model organism for studying brain wound healing via systems biology approach. Transcriptome microarray data and histological analysis of injured fish were sampled at different time points during recovery process. Time-course microarray data following wound healing of zebrafish were obtained. more...

Organism:

Danio rerio

Type:

Expression profiling by array

Platform:

GPL6457

9 Samples

Download data: TXT

(Submitter supplied) Transcriptional profiling of zebrafish embryo comparing wild type untreated embryos with embryos injected with morpholino of zf-bad. This assay is used for determination of expression profiling at 24 hpf and 48 hpf under Bad deficiency.

Organism:

Danio rerio

Type:

Expression profiling by array

Platform:

GPL6457

4 Samples

Download data: TXT

(Submitter supplied) Estrogen signaling is important for vertebrate embryonic development. Here we have used zebrafish (Danio rerio) as a vertebrate model to identify estrogen regulated genes during the first 4 days of development. Zebrafish embryos were exposed to 1 µM 17β-estradiol from 3 hours post fertilization to 4 days post fertilization, harvested daily and subjected to RNA extraction for transcriptome analysis using microarrays. more...

Organism:

Danio rerio

Type:

Expression profiling by array

Platform:

GPL6457

28 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Candida albicans; Danio rerio

Type:

Expression profiling by array

Platforms:

GPL14575 GPL6457

54 Samples

Download data: TXT

(Submitter supplied) The interaction between fungal pathogen and host during infection is a complex and dynamic process. To resolve this, we chose the zebrafish model organism as the host to study C. albicans infection via systems biology approach. Transcriptome microarray data and histological analysis of surviving fish were sampled at different post-infection time points. The dynamic variations of significant genes expression profiles in C. more...

Organism:

Danio rerio

Type:

Expression profiling by array

Platform:

GPL6457

27 Samples

Download data: TXT

(Submitter supplied) A genomic approach was used to indentify the differences in the gene expression profiles of adult zebrafish injected with different viral glycoproteins. This study intended to study the mechanisms of immunogenicity of each glycoprotein (gpG of VHSV and SVCV)

Organism:

Danio rerio

Type:

Expression profiling by array

Platform:

GPL6457

12 Samples

Download data: TXT

(Submitter supplied) Transcriptional profiling of zebrafish embryo comparing wild type untreated embryos with embryos injected with morpholino of zf-grna. This assay is used for determination of expression profiling of trunk muscle at 16, 24, 48, 72 hpf under GRN-A deficiency.

Organism:

Danio rerio

Type:

Expression profiling by array

Platform:

GPL6457

12 Samples

Download data: TXT