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Items: 12

1.

Deep sequencing of Drosophila melanogaster small RNAs

(Submitter supplied) High throughput seqeuncing of small RNAs (PAGE isolated from total RNA or Argonaute immunoprecipitates) from Drosophila melanogaster using the Illumina platform. Adapter ligation requires 5' monophosphate and 3' OH. Full analysis of all libraries in this set is published (Czech B. et al. 2008), leading to the description of endogenous siRNAs in flies. Keywords: Solexa sequences
Organism:
Drosophila melanogaster; Flock House virus
Type:
Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL9058 GPL9402
9 Samples
Download data: TXT
Series
Accession:
GSE11086
ID:
200011086

PubMed Full text in PMC Similar studies

2.

Illumina Genome Analyzer (Flock house virus)

Organism:
Flock House virus
1 Series
2 Samples
Download data
Platform
Accession:
GPL9402
ID:
100009402

3.

Illumina Genome Analyzer (Drosophila melanogaster)

Organism:
Drosophila melanogaster
469 Series
1851 Samples
Download data
Platform
Accession:
GPL9058
ID:
100009058

4.

S2cell (AGO1IP)

Organism:
Drosophila melanogaster
Source name:
small RNAs isolated from AGO1 immunoprecipitate from S2 cells
Platform:
GPL9058
Series:
GSE11086
Download data: TXT
Sample
Accession:
GSM280088
ID:
300280088

5.

S2cell (AGO2IP)

Organism:
Drosophila melanogaster
Source name:
small RNAs isolated from AGO2 immunoprecipitate from S2 cells
Platform:
GPL9058
Series:
GSE11086
Download data: TXT
Sample
Accession:
GSM280087
ID:
300280087

6.

WT ovaries (AGO2IP)

Organism:
Drosophila melanogaster
Source name:
small RNAs isolated from AGO2 immunoprecipitate from ovaries
Platform:
GPL9058
Series:
GSE11086
Download data: TXT
Sample
Accession:
GSM280086
ID:
300280086

7.

WT testes (18-24nt)

Organism:
Drosophila melanogaster
Source name:
adult testes from OreR flies
Platform:
GPL9058
Series:
GSE11086
Download data: TXT
Sample
Accession:
GSM280085
ID:
300280085

8.

loqs-/- ovaries (18-29nt)

Organism:
Drosophila melanogaster
Source name:
adult ovaries from loqs mutant flies
Platform:
GPL9058
Series:
GSE11086
Download data: TXT
Sample
Accession:
GSM280084
ID:
300280084

9.

dcr-2-/- ovaries (18-29nt)

Organism:
Drosophila melanogaster
Source name:
adult ovaries from dcr-2 mutant flies
Platform:
GPL9058
Series:
GSE11086
Download data: TXT
Sample
Accession:
GSM280083
ID:
300280083

10.

WT ovaries (18-29nt)

Organism:
Drosophila melanogaster
Source name:
adult ovaries from Celera sequencing strain
Platform:
GPL9058
Series:
GSE11086
Download data: TXT
Sample
Accession:
GSM280082
ID:
300280082

11.

S2cell (AGO1IP), Flock house virus

Organism:
Drosophila melanogaster; Flock House virus
Source name:
small RNA
Platform:
GPL9402
Series:
GSE11086
Download data: TXT
Sample
Accession:
GSM280090
ID:
300280090

12.

S2cell (AGO2IP), Flock house virus

Organism:
Flock House virus; Drosophila melanogaster
Source name:
small RNA
Platform:
GPL9402
Series:
GSE11086
Download data: TXT
Sample
Accession:
GSM280089
ID:
300280089

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db=gds|term=GSE11086[Accession]|query=1|qty=3|blobid=MCID_672eb61a6fe43f52cd5a2e48|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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